mRNA_F-serratus_M_contig7337.18556.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig7337.18556.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 205 bits (521), Expect = 3.030e-66 Identity = 108/126 (85.71%), Postives = 114/126 (90.48%), Query Frame = 1
Query: 1 MTGKGKGXXXXXDKKKTTTRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVASK 378
M+GKGKG KK+TTRS+KAGLQFPVGR+GRFLK GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK K
Sbjct: 1 MSGKGKGGRG----KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_F-serratus_M_contig7337.18556.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 203 bits (516), Expect = 1.020e-64 Identity = 107/122 (87.70%), Postives = 113/122 (92.62%), Query Frame = 1
Query: 1 MTGKGKGXXXXXDKKKTTTRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 366
M+GKGKG KK+TTRS+KAGLQFPVGR+GRFLK GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 46 MSGKGKGGRG----KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 163
BLAST of mRNA_F-serratus_M_contig7337.18556.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 198 bits (503), Expect = 2.560e-63 Identity = 105/122 (86.07%), Postives = 112/122 (91.80%), Query Frame = 1
Query: 1 MTGKGKGXXXXXDKKKTTTRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 366
M+GKGKG KK+T++SSKAGLQFPV RIGR+LK GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRG----KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_F-serratus_M_contig7337.18556.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA) HSP 1 Score: 196 bits (498), Expect = 1.220e-62 Identity = 101/125 (80.80%), Postives = 113/125 (90.40%), Query Frame = 1
Query: 1 MTGKGKGXXXXXDKKKTTTRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVAS 375
M GKGKG + KK+T++SSKAGLQFPV R+GRFLK G+Y++RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRH+QLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK AS
Sbjct: 1 MAGKGKGGRGA-EAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTAS 124
BLAST of mRNA_F-serratus_M_contig7337.18556.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 198 bits (503), Expect = 1.290e-62 Identity = 105/122 (86.07%), Postives = 112/122 (91.80%), Query Frame = 1
Query: 1 MTGKGKGXXXXXDKKKTTTRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 366
M+GKGKG KK+T++SSKAGLQFPV RIGR+LK GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 52 MSGKGKGGRG----KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169
BLAST of mRNA_F-serratus_M_contig7337.18556.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 195 bits (495), Expect = 2.520e-62 Identity = 101/122 (82.79%), Postives = 110/122 (90.16%), Query Frame = 1
Query: 1 MTGKGKGXXXXXDKKKTTTRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 366
M+GKGKG KK T+RS+KAGLQFPVGRIGRF+K GKYS RVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARI+PRH+QLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRG----KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_F-serratus_M_contig7337.18556.1 vs. uniprot
Match: A0A2G5ERW1_AQUCA (Histone H2A n=6 Tax=Mesangiospermae TaxID=1437183 RepID=A0A2G5ERW1_AQUCA) HSP 1 Score: 194 bits (493), Expect = 1.040e-61 Identity = 98/126 (77.78%), Postives = 111/126 (88.10%), Query Frame = 1
Query: 1 MTGKGKGXXXXXDKKKTTTRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVASK 378
M G+GK KK+T+RSSKAGLQFPVGRI RFLKAGKY++RVGAGAPVYLAAVLEYL AEVLELAGNAARDNKK R++PRH+QLAVRNDEEL+KLLG VTIA+GGV+PNIH++LLPKK SK
Sbjct: 1 MAGRGKALGSSGASKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRVVPRHIQLAVRNDEELSKLLGAVTIANGGVMPNIHSLLLPKKAGSK 126
BLAST of mRNA_F-serratus_M_contig7337.18556.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA) HSP 1 Score: 193 bits (490), Expect = 2.880e-61 Identity = 99/126 (78.57%), Postives = 113/126 (89.68%), Query Frame = 1
Query: 1 MTGKGKGXXXXXDKKKTTTRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVASK 378
M GKGKG DKK ++S+KAGLQFPVGR+GRFLK G+Y++RVGAGAPVY+AAV+EYL AEVLEL+GNAARDNKK+RIIPRH+QLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK SK
Sbjct: 1 MGGKGKGKGGRGDKK-AVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSK 125
BLAST of mRNA_F-serratus_M_contig7337.18556.1 vs. uniprot
Match: O22430_PINTA (Histone H2A n=12 Tax=cellular organisms TaxID=131567 RepID=O22430_PINTA) HSP 1 Score: 192 bits (489), Expect = 3.960e-61 Identity = 98/125 (78.40%), Postives = 109/125 (87.20%), Query Frame = 1
Query: 1 MTGKGKGXXXXXDKKKTTTRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVAS 375
M G+GK KK+T+RSSKAGLQFPVGRI RFLKAGKY++RVG GAPVYLAAVLEYL AEVLELAGNAARDNKK RI+PRH+QLAVRNDEEL+KLLG VTIA+GGV+PNIH +LLPKK AS
Sbjct: 1 MAGRGKAVGGAGGSKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGGGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGAVTIANGGVMPNIHNILLPKKTAS 125
BLAST of mRNA_F-serratus_M_contig7337.18556.1 vs. uniprot
Match: A0A7S3YXQ1_9EUKA (Histone H2A n=6 Tax=Lotharella TaxID=74819 RepID=A0A7S3YXQ1_9EUKA) HSP 1 Score: 193 bits (490), Expect = 4.110e-61 Identity = 101/122 (82.79%), Postives = 112/122 (91.80%), Query Frame = 1
Query: 1 MTGKGKGXXXXXDKKKTTTRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 366
M+GKGKG XXX K+TTRS++AGLQFPVGRI RFL+ G+YS RVG GAPVYLAAVLEYLTAE+LELAGNAARDNK+ RIIPRHVQLA+RNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK
Sbjct: 11 MSGKGKGGRXXXKSVKSTTRSARAGLQFPVGRISRFLRKGRYSTRVGGGAPVYLAAVLEYLTAEILELAGNAARDNKRTRIIPRHVQLAIRNDEELNKLLGDVTIAAGGVLPNIHAVLLPKK 132 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7337.18556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig7337.18556.1 >prot_F-serratus_M_contig7337.18556.1 ID=prot_F-serratus_M_contig7337.18556.1|Name=mRNA_F-serratus_M_contig7337.18556.1|organism=Fucus serratus male|type=polypeptide|length=127bp MTGKGKGGGGRGDKKKTTTRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAback to top mRNA from alignment at F-serratus_M_contig7337:2862..3242+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig7337.18556.1 ID=mRNA_F-serratus_M_contig7337.18556.1|Name=mRNA_F-serratus_M_contig7337.18556.1|organism=Fucus serratus male|type=mRNA|length=381bp|location=Sequence derived from alignment at F-serratus_M_contig7337:2862..3242+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig7337:2862..3242+ >mRNA_F-serratus_M_contig7337.18556.1 ID=mRNA_F-serratus_M_contig7337.18556.1|Name=mRNA_F-serratus_M_contig7337.18556.1|organism=Fucus serratus male|type=CDS|length=762bp|location=Sequence derived from alignment at F-serratus_M_contig7337:2862..3242+ (Fucus serratus male)back to top |