mRNA_F-serratus_M_contig733.18552.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig733.18552.1
Unique NamemRNA_F-serratus_M_contig733.18552.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig733.18552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig733contigF-serratus_M_contig733:50949..52043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size1095
Cds size717
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig733.18552.1prot_F-serratus_M_contig733.18552.1Fucus serratus malepolypeptideF-serratus_M_contig733 51248..51964 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932224.8100278-UTR-F-serratus_M_contig733:50948..512471622932224.8100278-UTR-F-serratus_M_contig733:50948..51247Fucus serratus maleUTRF-serratus_M_contig733 50949..51247 +
1690964206.5416183-UTR-F-serratus_M_contig733:50948..512471690964206.5416183-UTR-F-serratus_M_contig733:50948..51247Fucus serratus maleUTRF-serratus_M_contig733 50949..51247 +
1622932224.8563554-UTR-F-serratus_M_contig733:51964..520431622932224.8563554-UTR-F-serratus_M_contig733:51964..52043Fucus serratus maleUTRF-serratus_M_contig733 51965..52043 +
1690964206.567848-UTR-F-serratus_M_contig733:51964..520431690964206.567848-UTR-F-serratus_M_contig733:51964..52043Fucus serratus maleUTRF-serratus_M_contig733 51965..52043 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932224.8292649-CDS-F-serratus_M_contig733:51247..519641622932224.8292649-CDS-F-serratus_M_contig733:51247..51964Fucus serratus maleCDSF-serratus_M_contig733 51248..51964 +
1690964206.5569744-CDS-F-serratus_M_contig733:51247..519641690964206.5569744-CDS-F-serratus_M_contig733:51247..51964Fucus serratus maleCDSF-serratus_M_contig733 51248..51964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig733.18552.1

>prot_F-serratus_M_contig733.18552.1 ID=prot_F-serratus_M_contig733.18552.1|Name=mRNA_F-serratus_M_contig733.18552.1|organism=Fucus serratus male|type=polypeptide|length=239bp
MLLRYATAARPFLLLLLWHATAAVGAGADAVTVTAAIVDAVGVAVGKSPP
REDVTAANEVGTPHEDAVDGHGLEVVERGLMVPHCLSSSALHSLFFALMT
SSSCSKVFFFRWNISKSALKAATSSSDIGKVPLLAFPAPWLSQSYTPPLS
RSAMATVPAIHSSAVPVPVGHRISYTILPLSCLLSPHPSPFGHGLSSKIS
VRRPFGPTNIYVRRPFDPAYLWLQRQYPAAYTRPNILC*
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mRNA from alignment at F-serratus_M_contig733:50949..52043+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig733.18552.1 ID=mRNA_F-serratus_M_contig733.18552.1|Name=mRNA_F-serratus_M_contig733.18552.1|organism=Fucus serratus male|type=mRNA|length=1095bp|location=Sequence derived from alignment at F-serratus_M_contig733:50949..52043+ (Fucus serratus male)
AGCCGAACCAGGCAATGTTGATCTTCACCATCTTGGAAGAGGTTGATGGG
AAAGAAGATGCCTTCGGCTACGACCACCGCCTTCTCCGCATGTCCACGGA
GCTCGCTGAAACATTTTCACCTGATAGGAAAATGTGGAAAACAAACACGT
ACAAACAGGGAAAACACGAAGAACAAGTACTCCGTACAGCCGCCCGCTCT
TTGCCCCCGGGATCGAAGGGTCGCAGCAGTGCTACGACACAGGTTGTATC
CCACCATGAATCGTGATTACTAGTGCTGTTGCTGGTGTTATCACTGCTGA
TGTTGCTGCGGTATGCCACCGCTGCGAGACCATTCCTGCTGCTGCTGCTA
TGGCATGCCACCGCCGCTGTAGGTGCTGGTGCAGATGCTGTTACTGTTAC
CGCTGCTATTGTCGATGCCGTCGGTGTTGCGGTGGGAAAGTCCCCGCCGC
GTGAAGATGTCACCGCTGCCAACGAAGTAGGCACTCCACATGAAGACGCC
GTTGACGGCCACGGCCTCGAAGTAGTAGAGAGGGGGCTAATGGTACCACA
TTGCCTCTCCAGCTCCGCCTTACATTCCCTATTTTTTGCTTTAATGACAT
CTAGTTCCTGCTCCAAAGTTTTCTTTTTCCGCTGGAACATCTCCAAGTCG
GCTCTCAAAGCCGCAACATCCTCGTCCGACATAGGCAAAGTACCCTTGCT
TGCTTTCCCAGCCCCTTGGCTGTCCCAGTCATATACTCCTCCACTGTCCC
GGTCCGCAATGGCCACTGTACCAGCTATACACTCTTCCGCTGTCCCGGTC
CCTGTTGGCCACCGTATCAGCTATACCATACTCCCGCTGTCTTGTCTCCT
CTCGCCGCACCCGTCCCCTTTTGGCCACGGTCTCAGTTCTAAAATTTCTG
TCCGTCGCCCCTTTGGCCCGACTAACATATATGTACGTCGCCCCTTTGAC
CCGGCTTACTTATGGCTCCAACGCCAATACCCAGCTGCCTACACCAGGCC
CAACATATTGTGTTAGGATACGACAGCTTCGTCAGAGGTCGAAGGAGAAA
AAAAGGTTGCCTCAAGACCTTTTATATTATCGAGAGAGATTACAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig733:50949..52043+

>mRNA_F-serratus_M_contig733.18552.1 ID=mRNA_F-serratus_M_contig733.18552.1|Name=mRNA_F-serratus_M_contig733.18552.1|organism=Fucus serratus male|type=CDS|length=1434bp|location=Sequence derived from alignment at F-serratus_M_contig733:50949..52043+ (Fucus serratus male)
ATGTTGCTGCGGTATGCCACCGCTGCGAGACCATTCCTGCTGCTGCTGCT
ATGGCATGCCACCGCCGCTGTAGGTGCTGGTGCAGATGCTGTTACTGTTA
CCGCTGCTATTGTCGATGCCGTCGGTGTTGCGGTGGGAAAGTCCCCGCCG
CGTGAAGATGTCACCGCTGCCAACGAAGTAGGCACTCCACATGAAGACGC
CGTTGACGGCCACGGCCTCGAAGTAGTAGAGAGGGGGCTAATGGTACCAC
ATTGCCTCTCCAGCTCCGCCTTACATTCCCTATTTTTTGCTTTAATGACA
TCTAGTTCCTGCTCCAAAGTTTTCTTTTTCCGCTGGAACATCTCCAAGTC
GGCTCTCAAAGCCGCAACATCCTCGTCCGACATAGGCAAAGTACCCTTGC
TTGCTTTCCCAGCCCCTTGGCTGTCCCAGTCATATACTCCTCCACTGTCC
CGGTCCGCAATGGCCACTGTACCAGCTATACACTCTTCCGCTGTCCCGGT
CCCTGTTGGCCACCGTATCAGCTATACCATACTCCCGCTGTCTTGTCTCC
TCTCGCCGCACCCGTCCCCTTTTGGCCACGGTCTCAGTTCTAAAATTTCT
GTCCGTCGCCCCTTTGGCCCGACTAACATATATGTACGTCGCCCCTTTGA
CCCGGCTTACTTATGGCTCCAACGCCAATACCCAGCTGCCTACACCAGGC
CCAACATATTGTGTTAGATGTTGCTGCGGTATGCCACCGCTGCGAGACCA
TTCCTGCTGCTGCTGCTATGGCATGCCACCGCCGCTGTAGGTGCTGGTGC
AGATGCTGTTACTGTTACCGCTGCTATTGTCGATGCCGTCGGTGTTGCGG
TGGGAAAGTCCCCGCCGCGTGAAGATGTCACCGCTGCCAACGAAGTAGGC
ACTCCACATGAAGACGCCGTTGACGGCCACGGCCTCGAAGTAGTAGAGAG
GGGGCTAATGGTACCACATTGCCTCTCCAGCTCCGCCTTACATTCCCTAT
TTTTTGCTTTAATGACATCTAGTTCCTGCTCCAAAGTTTTCTTTTTCCGC
TGGAACATCTCCAAGTCGGCTCTCAAAGCCGCAACATCCTCGTCCGACAT
AGGCAAAGTACCCTTGCTTGCTTTCCCAGCCCCTTGGCTGTCCCAGTCAT
ATACTCCTCCACTGTCCCGGTCCGCAATGGCCACTGTACCAGCTATACAC
TCTTCCGCTGTCCCGGTCCCTGTTGGCCACCGTATCAGCTATACCATACT
CCCGCTGTCTTGTCTCCTCTCGCCGCACCCGTCCCCTTTTGGCCACGGTC
TCAGTTCTAAAATTTCTGTCCGTCGCCCCTTTGGCCCGACTAACATATAT
GTACGTCGCCCCTTTGACCCGGCTTACTTATGGCTCCAACGCCAATACCC
AGCTGCCTACACCAGGCCCAACATATTGTGTTAG
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