mRNA_F-serratus_M_contig7328.18550.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7328.18550.1
Unique NamemRNA_F-serratus_M_contig7328.18550.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7328.18550.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 5.270e-13
Identity = 34/60 (56.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 GGYVYRGQAYADLIYGAYVFADYSYRNIYYIMKQDDGTYTTGTIISDRSVGVYSFAEDMN 180
            GGYVYRG  ++DL+YG Y+F D + +NI+Y++K+ DG ++ GTIISD SV + SFAED+N
Sbjct:  422 GGYVYRGNFFSDLLYGHYIFGDSTMKNIFYLVKEGDG-WSLGTIISDASVQIISFAEDVN 480
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BLAST of mRNA_F-serratus_M_contig7328.18550.1 vs. uniprot
Match: D7G961_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G961_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 2.550e-12
Identity = 33/60 (55.00%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 GGYVYRGQAYADLIYGAYVFADYSYRNIYYIMKQDDGTYTTGTIISDRSVGVYSFAEDMN 180
            GGYVYRG  ++DL+ GAY+F D + RNIY++ +++DG +  GTI+SD SV + SFAED+N
Sbjct:  405 GGYVYRGNFFSDLLDGAYIFGDSTMRNIYFLKEEEDG-WAVGTIVSDASVQIISFAEDVN 463
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BLAST of mRNA_F-serratus_M_contig7328.18550.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 3.470e-12
Identity = 33/60 (55.00%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 GGYVYRGQAYADLIYGAYVFADYSYRNIYYIMKQDDGTYTTGTIISDRSVGVYSFAEDMN 180
            GGYVYRG  ++DL+ GAY+F D + +NIYY++++D G ++ GTIISD SV + SF+ED+N
Sbjct:  485 GGYVYRGNYFSDLLNGAYIFGDSTMKNIYYLVEEDGG-WSLGTIISDASVQIISFSEDIN 543
[Close]
BLAST of mRNA_F-serratus_M_contig7328.18550.1 vs. uniprot
Match: A0A6H5KT40_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT40_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.230e-11
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 GGYVYRGQAYADLIYGAYVFADYSYRNIYYIMKQDDGTYTTGTIISDRSVGVYSFAEDMN 180
            GGYVYRG  ++DL+ GAY+F D + RNIY++ +++ G +  GTIISD SV + SFAED+N
Sbjct:  364 GGYVYRGNFFSDLLDGAYIFGDSTMRNIYFLREEEAG-WAVGTIISDASVQIVSFAEDVN 422
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7328.18550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JZF5_9PHAE5.270e-1356.67GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G961_ECTSI2.550e-1255.00Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
D7G4P3_ECTSI3.470e-1255.00Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
A0A6H5KT40_9PHAE2.230e-1155.00GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7328contigF-serratus_M_contig7328:12574..13101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue2.8e-11
Seed eggNOG ortholog2880.D7G6T7
KEGG rclassRC00194
KEGG koko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG ReactionR01098
KEGG Pathwayko00052,ko04011,ko04139,map00052,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC1.1.3.9,1.2.3.15,3.2.1.59
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size181
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932224.3969018-CDS-F-serratus_M_contig7328:12573..126501622932224.3969018-CDS-F-serratus_M_contig7328:12573..12650Fucus serratus maleCDSF-serratus_M_contig7328 12574..12650 +
1690964206.3752782-CDS-F-serratus_M_contig7328:12573..126501690964206.3752782-CDS-F-serratus_M_contig7328:12573..12650Fucus serratus maleCDSF-serratus_M_contig7328 12574..12650 +
1622932224.414098-CDS-F-serratus_M_contig7328:12997..131001622932224.414098-CDS-F-serratus_M_contig7328:12997..13100Fucus serratus maleCDSF-serratus_M_contig7328 12998..13100 +
1690964206.392684-CDS-F-serratus_M_contig7328:12997..131001690964206.392684-CDS-F-serratus_M_contig7328:12997..13100Fucus serratus maleCDSF-serratus_M_contig7328 12998..13100 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7328.18550.1prot_F-serratus_M_contig7328.18550.1Fucus serratus malepolypeptideF-serratus_M_contig7328 12574..13100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7328.18550.1

>prot_F-serratus_M_contig7328.18550.1 ID=prot_F-serratus_M_contig7328.18550.1|Name=mRNA_F-serratus_M_contig7328.18550.1|organism=Fucus serratus male|type=polypeptide|length=60bp
GGYVYRGQAYADLIYGAYVFADYSYRNIYYIMKQDDGTYTTGTIISDRSV
GVYSFAEDMN
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mRNA from alignment at F-serratus_M_contig7328:12574..13101+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7328.18550.1 ID=mRNA_F-serratus_M_contig7328.18550.1|Name=mRNA_F-serratus_M_contig7328.18550.1|organism=Fucus serratus male|type=mRNA|length=528bp|location=Sequence derived from alignment at F-serratus_M_contig7328:12574..13101+ (Fucus serratus male)
GGAGGATACGTCTACCGAGGGCAAGCGTACGCTGACCTGATCTACGGCGC
GTATGTCTTCGCCGACTACTCGTACAGGTCAGTACCTTTAGTGTATAGGT
GTACACTGGTAGTTGAGGTAAAGGACATATATGACTGCTGCAAAAGGGTG
CGTCCTACGTCGTTTGCGCTCTATATGCGGTCACCAAATGTGCACTGCAG
AGAATGAAAATAGTCACCCGAATGCCGGATCTTCTACTACATTGAGGGAA
AAACAGCTTGAGGACCTCGTTTACGCTTTTCCACCGAGCTGTTAATAGAC
GCTTAGTCAGCGCCGACGGAGCACATGGCTCATTGGATTTATCACTAGAT
CCAACAACAACCACCAGTTCAGCGCCATGACGACCGCATCCGCTCCTCGC
CCGCCCACTTGCTTTGCATGTCAGGAACATTTACTACATCATGAAGCAGG
ACGACGGAACATATACGACGGGCACTATCATCAGCGACCGAAGTGTGGGC
GTGTACTCCTTTGCCGAGGACATGAACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7328:12574..13101+

>mRNA_F-serratus_M_contig7328.18550.1 ID=mRNA_F-serratus_M_contig7328.18550.1|Name=mRNA_F-serratus_M_contig7328.18550.1|organism=Fucus serratus male|type=CDS|length=360bp|location=Sequence derived from alignment at F-serratus_M_contig7328:12574..13101+ (Fucus serratus male)
GGAGGATACGTCTACCGAGGGCAAGCGTACGCTGACCTGATCTACGGCGC
GTATGTCTTCGCCGACTACTCGTACAGGGAGGATACGTCTACCGAGGGCA
AGCGTACGCTGACCTGATCTACGGCGCGTATGTCTTCGCCGACTACTCGT
ACAGGAACATTTACTACATCATGAAGCAGGACGACGGAACATATACGACG
GGCACTATCATCAGCGACCGAAGTGTGGGCGTGTACTCCTTTGCCGAGGA
CATGAACGAACATTTACTACATCATGAAGCAGGACGACGGAACATATACG
ACGGGCACTATCATCAGCGACCGAAGTGTGGGCGTGTACTCCTTTGCCGA
GGACATGAAC
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