mRNA_F-serratus_M_contig729.18512.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig729.18512.1
Unique NamemRNA_F-serratus_M_contig729.18512.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig729.18512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig729contigF-serratus_M_contig729:294291..294848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size308
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932215.6635997-CDS-F-serratus_M_contig729:294290..2945301622932215.6635997-CDS-F-serratus_M_contig729:294290..294530Fucus serratus maleCDSF-serratus_M_contig729 294291..294530 +
1690964202.5170941-CDS-F-serratus_M_contig729:294290..2945301690964202.5170941-CDS-F-serratus_M_contig729:294290..294530Fucus serratus maleCDSF-serratus_M_contig729 294291..294530 +
1622932215.6855407-CDS-F-serratus_M_contig729:294781..2948471622932215.6855407-CDS-F-serratus_M_contig729:294781..294847Fucus serratus maleCDSF-serratus_M_contig729 294782..294847 +
1690964202.527147-CDS-F-serratus_M_contig729:294781..2948471690964202.527147-CDS-F-serratus_M_contig729:294781..294847Fucus serratus maleCDSF-serratus_M_contig729 294782..294847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig729.18512.1prot_F-serratus_M_contig729.18512.1Fucus serratus malepolypeptideF-serratus_M_contig729 294291..294847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig729.18512.1

>prot_F-serratus_M_contig729.18512.1 ID=prot_F-serratus_M_contig729.18512.1|Name=mRNA_F-serratus_M_contig729.18512.1|organism=Fucus serratus male|type=polypeptide|length=102bp
GSVGQSSERDTAQSTISQSISRPASKSSLSSSISRTKPQHHLPRLPSRRR
STRRGFAQNKGDVTRGALARKMQLVSPLHDQSEDGLIYSKLTTDILKNAL
GP
back to top

mRNA from alignment at F-serratus_M_contig729:294291..294848+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig729.18512.1 ID=mRNA_F-serratus_M_contig729.18512.1|Name=mRNA_F-serratus_M_contig729.18512.1|organism=Fucus serratus male|type=mRNA|length=558bp|location=Sequence derived from alignment at F-serratus_M_contig729:294291..294848+ (Fucus serratus male)
GGCAGCGTTGGCCAAAGTTCAGAGCGGGATACGGCACAGAGTACCATATC
CCAGTCCATTTCGCGTCCAGCTTCGAAGTCATCATTATCCTCCTCGATCT
CTCGTACCAAGCCTCAACATCACCTACCACGTTTACCATCGAGGAGAAGA
TCAACAAGACGAGGTTTCGCGCAGAACAAGGGTGATGTTACCAGGGGTGC
GCTCGCGAGGAAAATGCAACTGGTGTCACCGCTCCATGATGTGGGTACTT
CCTTCCATCCCACATTGGAAAATTGAGTCCGATCCTGGAAACGTTTTCCT
GCCCGATATTCCTTATTATTTACGCTTCGAATTCCGTGGACGCTTGATCA
TTCTAAGCTCCTTGTACCTTCCCACAACATATTAAGATCTTCACTTATTC
TATTGCACCCTCACGTCGCACATTCTAATGCGCCTTCACTCCTCGCATCC
GTCATACCTCGTAATGCTTTGCGGTGTATTATACCCGACAGCAATCAGAA
GACGGGCTGATATACTCGAAACTGACCACCGACATTCTGAAAAATGCCCT
CGGGCCGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig729:294291..294848+

>mRNA_F-serratus_M_contig729.18512.1 ID=mRNA_F-serratus_M_contig729.18512.1|Name=mRNA_F-serratus_M_contig729.18512.1|organism=Fucus serratus male|type=CDS|length=612bp|location=Sequence derived from alignment at F-serratus_M_contig729:294291..294848+ (Fucus serratus male)
GGCAGCGTTGGCCAAAGTTCAGAGCGGGATACGGCACAGAGTACCATATC
CCAGTCCATTTCGCGTCCAGCTTCGAAGTCATCATTATCCTCCTCGATCT
CTCGTACCAAGCCTCAACATCACCTACCACGTTTACCATCGAGGAGAAGA
TCAACAAGACGAGGTTTCGCGCAGAACAAGGGTGATGTTACCAGGGGTGC
GCTCGCGAGGAAAATGCAACTGGTGTCACCGCTCCATGATGGCAGCGTTG
GCCAAAGTTCAGAGCGGGATACGGCACAGAGTACCATATCCCAGTCCATT
TCGCGTCCAGCTTCGAAGTCATCATTATCCTCCTCGATCTCTCGTACCAA
GCCTCAACATCACCTACCACGTTTACCATCGAGGAGAAGATCAACAAGAC
GAGGTTTCGCGCAGAACAAGGGTGATGTTACCAGGGGTGCGCTCGCGAGG
AAAATGCAACTGGTGTCACCGCTCCATGATCAATCAGAAGACGGGCTGAT
ATACTCGAAACTGACCACCGACATTCTGAAAAATGCCCTCGGGCCGCAAT
CAGAAGACGGGCTGATATACTCGAAACTGACCACCGACATTCTGAAAAAT
GCCCTCGGGCCG
back to top