mRNA_F-serratus_M_contig728.18507.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig728.18507.1
Unique NamemRNA_F-serratus_M_contig728.18507.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig728.18507.1 vs. uniprot
Match: D7FZQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ7_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 8.410e-53
Identity = 92/158 (58.23%), Postives = 118/158 (74.68%), Query Frame = 1 
Query:    1 FLAQVRRCRFDKRVSGGPGKLIRCSGTIIVDGVKGAAGCQARVHVYKGRSMKKWDVTEAVLNHVQCTGQSGDKKKRPCRRSVEEEAAKLINANHTITSPALVKTLKATAGVEISERTANRVRSDVLGKVQDATAAHYQLLDSYLSSIGRDNGNIVECE 474
             ++Q R+CR DKRVSGG GKL RC+G II    K  +GC  R    K ++   W VTE VL+HV CTGQ+G+KK+R  RR VE EAA L++ANH+IT P+LVKTLKAT+GV++SER+A+R+R+D+LGK +DA A  YQLL S    +GRDNGNIVEC+
Sbjct:    1 MISQSRQCRLDKRVSGGRGKLHRCTGAIING--KATSGCPVRARGCK-QTDGTWKVTEVVLDHVACTGQAGNKKQRINRRCVEGEAAALVSANHSITCPSLVKTLKATSGVDVSERSASRMRADILGKGKDAIAKEYQLLQSSCDLLGRDNGNIVECQ 155
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BLAST of mRNA_F-serratus_M_contig728.18507.1 vs. uniprot
Match: A0A6H5JX21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX21_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 2.140e-50
Identity = 89/158 (56.33%), Postives = 112/158 (70.89%), Query Frame = 1 
Query:    1 FLAQVRRCRFDKRVSGGPGKLIRCSGTIIVDGVKGAAGCQARVHVYKGRSMKKWDVTEAVLNHVQCTGQSGDKKKRPCRRSVEEEAAKLINANHTITSPALVKTLKATAGVEISERTANRVRSDVLGKVQDATAAHYQLLDSYLSSIGRDNGNIVECE 474
             ++  R+CR DKRVSGG GKL RC+G +I    K  +GC       K      W VTE VL+HV CTGQ+G+KK+R  RR VEEEAA L+++N +IT PAL KTLKAT+GV+ISERTA R+R+D+LGK +D  A  YQLL SY   +GRDNGN+VEC+
Sbjct:   47 MISTSRQCRLDKRVSGGRGKLHRCTGAVING--KATSGCPVLARACKLHD-GTWKVTEVVLDHVACTGQAGNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDNGNVVECK 201
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BLAST of mRNA_F-serratus_M_contig728.18507.1 vs. uniprot
Match: A0A6H5KQC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQC0_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 2.180e-49
Identity = 91/157 (57.96%), Postives = 114/157 (72.61%), Query Frame = 1 
Query:    1 FLAQVRRCRFDKRVSGGPGKLIRCSGTIIVDGVKGAAGCQARVHVYKGRSMKKWDVTEAVLNHVQCTGQSGDKKKRPCRRSVEEEAAKLINANHTITSPALVKTLKATAGVEISERTANRVRSDVLGKVQDATAAHYQLLDSYLSSIGRDNGNIVEC 471
             ++Q R+CR DKR SGG  KL RC+G II    K  +GC  R    K ++   W VTEAVL+HV CTGQ+G+KK+   RR VE++AA L++ANH+IT P+LVKTLKAT+GV+ISERTA R+R D+LGK  DA A  YQLL +Y   +GRDNGNIVEC
Sbjct:    1 MISQSRQCRLDKRDSGGRSKLHRCTGAIING--KATSGCPVRARGCK-QTDGTWKVTEAVLDHVACTGQAGNKKQGINRRCVEKQAAALVSANHSITCPSLVKTLKATSGVDISERTAGRMRVDILGKGNDAIAKEYQLLQNYCDLLGRDNGNIVEC 154
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BLAST of mRNA_F-serratus_M_contig728.18507.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 1.330e-46
Identity = 89/158 (56.33%), Postives = 112/158 (70.89%), Query Frame = 1 
Query:    1 FLAQVRRCRFDKRVSGGPGKLIRCSGTIIVDGVKGAAGCQARVHVYKGRSMKKWDVTEAVLNHVQCTGQSGDKKKRPCRRSVEEEAAKLINANHTITSPALVKTLKATAGVEISERTANRVRSDVLGKVQDATAAHYQLLDSYLSSIGRDNGNIVECE 474
             ++  R+CR DKRVSGG GKL RC+G +I    K  +GC       K      W VTE VL+HV CTGQ+G+KK+R  RR VEEEAA L+++N +IT PAL KTLKAT+GV+ISERTA R+R+D+LGK +D  A  YQLL SY   +GRDNGN+VEC+
Sbjct:   47 MISTSRQCRLDKRVSGGRGKLHRCTGAVING--KATSGCPVLARACKLHD-GTWKVTEVVLDHVACTGQAGNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDNGNVVECK 201
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BLAST of mRNA_F-serratus_M_contig728.18507.1 vs. uniprot
Match: A0A6H5J5Y0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Y0_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 9.740e-46
Identity = 87/152 (57.24%), Postives = 111/152 (73.03%), Query Frame = 1 
Query:    1 FLAQVRRCRFDKRVSGGPGKLIRCSGTIIVDGVKGAAGCQARVHVYKGRSMKKWDVTEAVLNHVQCTGQSGDKKKRPCRRSVEEEAAKLINANHTITSPALVKTLKATAGVEISERTANRVRSDVLGKVQDATAAHYQLLDSYLSSIGRDNG 456
             +AQ R+CR DKR+ GG GKL RC+G I V+G K  +GC       K ++   W VTE VL+HV CTGQ+ +KK+R  RR VE EAA L++ANH IT P+LVKTLKAT+GV++SERTA+R+R+D+LGK +DA A  YQLL SY   +GRDNG
Sbjct:  155 MIAQSRQCRLDKRIIGGRGKLHRCTGAI-VNG-KATSGCPVLARGCK-QTDGTWKVTEVVLDHVACTGQASNKKQRINRRCVEREAAALVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYCDLLGRDNG 303
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BLAST of mRNA_F-serratus_M_contig728.18507.1 vs. uniprot
Match: A0A6H5L768_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L768_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 3.730e-35
Identity = 75/135 (55.56%), Postives = 98/135 (72.59%), Query Frame = 1 
Query:   70 CSGTIIVDGVKGAAGCQARVHVYKGRSMKKWDVTEAVLNHVQCTGQSGDKKKRPCRRSVEEEAAKLINANHTITSPALVKTLKATAGVEISERTANRVRSDVLGKVQDATAAHYQLLDSYLSSIGRDNGNIVECE 474
            C+G I V+G K  +GC  R    K ++   W V + VL+HV  TGQ+G+KK+R  RR VE EA  L++ANH IT P+LVKTLKAT+GV++SERTA+R+R+D+LGK +DA A  YQLL SY   +GRDN NIVEC+
Sbjct:   21 CTGAI-VNG-KATSGCPVRARGCK-QTDGTWKVMDVVLDHVARTGQAGNKKQRINRRCVEGEATGLVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYGDLLGRDNRNIVECK 152
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig728.18507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FZQ7_ECTSI8.410e-5358.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JX21_9PHAE2.140e-5056.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQC0_9PHAE2.180e-4957.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4I0_9PHAE1.330e-4656.33SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J5Y0_9PHAE9.740e-4657.24Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L768_9PHAE3.730e-3555.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig728contigF-serratus_M_contig728:342040..342513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932215.526142-CDS-F-serratus_M_contig728:342039..3425131622932215.526142-CDS-F-serratus_M_contig728:342039..342513Fucus serratus maleCDSF-serratus_M_contig728 342040..342513 +
1690964202.4690719-CDS-F-serratus_M_contig728:342039..3425131690964202.4690719-CDS-F-serratus_M_contig728:342039..342513Fucus serratus maleCDSF-serratus_M_contig728 342040..342513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig728.18507.1prot_F-serratus_M_contig728.18507.1Fucus serratus malepolypeptideF-serratus_M_contig728 342040..342513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig728.18507.1

>prot_F-serratus_M_contig728.18507.1 ID=prot_F-serratus_M_contig728.18507.1|Name=mRNA_F-serratus_M_contig728.18507.1|organism=Fucus serratus male|type=polypeptide|length=158bp
FLAQVRRCRFDKRVSGGPGKLIRCSGTIIVDGVKGAAGCQARVHVYKGRS
MKKWDVTEAVLNHVQCTGQSGDKKKRPCRRSVEEEAAKLINANHTITSPA
LVKTLKATAGVEISERTANRVRSDVLGKVQDATAAHYQLLDSYLSSIGRD
NGNIVECE
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mRNA from alignment at F-serratus_M_contig728:342040..342513+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig728.18507.1 ID=mRNA_F-serratus_M_contig728.18507.1|Name=mRNA_F-serratus_M_contig728.18507.1|organism=Fucus serratus male|type=mRNA|length=474bp|location=Sequence derived from alignment at F-serratus_M_contig728:342040..342513+ (Fucus serratus male)
TTTCTGGCACAGGTTAGGCGGTGCCGCTTCGATAAGAGAGTATCTGGCGG
CCCGGGCAAGCTCATCCGCTGCAGCGGGACGATCATCGTCGACGGCGTGA
AGGGGGCAGCCGGCTGCCAGGCGCGCGTTCATGTGTACAAGGGAAGGTCT
ATGAAGAAATGGGATGTAACCGAGGCCGTCCTTAATCACGTGCAATGCAC
CGGGCAGTCCGGCGACAAGAAGAAACGGCCCTGCCGAAGGTCGGTGGAGG
AAGAAGCCGCGAAGCTCATCAATGCGAACCATACGATTACATCGCCAGCA
CTCGTAAAGACGTTGAAAGCGACTGCCGGCGTCGAGATCTCTGAGCGTAC
GGCCAACCGCGTGCGATCCGACGTGCTCGGCAAAGTTCAAGATGCAACCG
CTGCACATTACCAACTTCTCGACAGCTACCTAAGCAGCATCGGGAGGGAC
AACGGCAACATCGTGGAATGCGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig728:342040..342513+

>mRNA_F-serratus_M_contig728.18507.1 ID=mRNA_F-serratus_M_contig728.18507.1|Name=mRNA_F-serratus_M_contig728.18507.1|organism=Fucus serratus male|type=CDS|length=948bp|location=Sequence derived from alignment at F-serratus_M_contig728:342040..342513+ (Fucus serratus male)
TTTCTGGCACAGGTTAGGCGGTGCCGCTTCGATAAGAGAGTATCTGGCGG
CCCGGGCAAGCTCATCCGCTGCAGCGGGACGATCATCGTCGACGGCGTGA
AGGGGGCAGCCGGCTGCCAGGCGCGCGTTCATGTGTACAAGGGAAGGTCT
ATGAAGAAATGGGATGTAACCGAGGCCGTCCTTAATCACGTGCAATGCAC
CGGGCAGTCCGGCGACAAGAAGAAACGGCCCTGCCGAAGGTCGGTGGAGG
AAGAAGCCGCGAAGCTCATCAATGCGAACCATACGATTACATCGCCAGCA
CTCGTAAAGACGTTGAAAGCGACTGCCGGCGTCGAGATCTCTGAGCGTAC
GGCCAACCGCGTGCGATCCGACGTGCTCGGCAAAGTTCAAGATGCAACCG
CTGCACATTACCAACTTCTCGACAGCTACCTAAGCAGCATCGGGAGGGAC
AACGGCAACATCGTGGAATGCGAGTTTCTGGCACAGGTTAGGCGGTGCCG
CTTCGATAAGAGAGTATCTGGCGGCCCGGGCAAGCTCATCCGCTGCAGCG
GGACGATCATCGTCGACGGCGTGAAGGGGGCAGCCGGCTGCCAGGCGCGC
GTTCATGTGTACAAGGGAAGGTCTATGAAGAAATGGGATGTAACCGAGGC
CGTCCTTAATCACGTGCAATGCACCGGGCAGTCCGGCGACAAGAAGAAAC
GGCCCTGCCGAAGGTCGGTGGAGGAAGAAGCCGCGAAGCTCATCAATGCG
AACCATACGATTACATCGCCAGCACTCGTAAAGACGTTGAAAGCGACTGC
CGGCGTCGAGATCTCTGAGCGTACGGCCAACCGCGTGCGATCCGACGTGC
TCGGCAAAGTTCAAGATGCAACCGCTGCACATTACCAACTTCTCGACAGC
TACCTAAGCAGCATCGGGAGGGACAACGGCAACATCGTGGAATGCGAG
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