mRNA_F-serratus_M_contig7272.18502.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig7272.18502.1 vs. uniprot
Match: D8LCF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCF7_ECTSI) HSP 1 Score: 486 bits (1251), Expect = 7.350e-152 Identity = 347/794 (43.70%), Postives = 400/794 (50.38%), Query Frame = 1
Query: 187 STVLARCLKLLSGDSDEHKFAGLVMVTKHVPALTASSATDGSTGRGEERSISEAGQLRQICSAVGPNFVHRLLRTAED---GGGSSGSRDGDQTRVIGGASGLSVYQQISLGVLAAFLRDESLVERFIPVAPALVRAIRAANAXXXXXXXXXXXXXXXXLAGSVGGTERLLRAGAAAAVVARLVAASVERTSRHQKSTQSGGGGM----------------------------------------------------------EETKGSAGDATRKEFCSTPAGLGESDAMARVEVTAFAFVARALEASSGNCLGVRELTNIAQAFRDDPTPVKFEFMDLLLRWAVLQE----------GDGDTCADSVGAWTRQGPFPAALREGLLQGLHGAAKDKHRDSALALLASLLRALGQEWAVEEEAEAETATVREQGNRGSARNLS----------SAGKTMARKRGTFVAFAIRCAAGEVRILLDECVSTLLPGVA-------------GDATGESTD---------------ASHDDCKRGAAGSW-----------------------------------------------------------------------YWDELPSKTLLDLQKTLTGLFGCVLDFLAEIRPWIVSDDLA----ASGSGRSPSPSMLDLWTVQRVGLACSHALGVWVAEDPEGLPQRFVDTLPVMLALKADAEAPDSDDEESEDESEWDAVVPTMA-SLAAFPGASRYVAGPALQG-----STTVVADEALHNILRAMLALSYEPAP 1998
S VLA+CLKLL G SDEHKFAGLVMVTKHVPALTAS + + G + + G+LRQIC+AVGP F+HRLLRT D GGGS G R G GLSVYQQI+LGVLAA +DESLV +F+P+APALVRA+RAA+A +AG G ERLLRAGAA AV +RL AS ER +R + GG ++ +G D TPA E R E A AFV RALEAS G CLG RELT +A+AFRDDPTP KF F+DLLLRWA L+E GDG VGAWTR GPFPAALREGLLQ LHGAA+D RDSALALLASLLRA+GQEWAVEE+ E + RKRGTFVAFA+RCAAGEVRILLDE +S +P A G TG+ A K AAG+ W+ELP TL DLQKTL GLFGCVLDFL+EIR W+++ + A G S PS++DLW + R+GL CS LGVWVAEDPE LPQRF++ LPV+LALKA EAPDSD T+ +LAAFPGA+RY+AG A G S+ DEALHNILRAMLALSYEP P
Sbjct: 48 SAVLAQCLKLLKGQSDEHKFAGLVMVTKHVPALTASESVR-TVSSGSPSASAGGGELRQICNAVGPAFLHRLLRTPGDKSSGGGSGGDRGG------AAVGGLSVYQQIALGVLAALFQDESLVPKFVPIAPALVRALRAADAATQTQGLCDALYCTQAIAGVPVGMERLLRAGAAPAVASRLSVASGERAARPNEEKDPGGDQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKDDGRGGPADGD------TPAAAAE-----RSEGLALAFVGRALEASGGGCLGSRELTAVAEAFRDDPTPAKFGFLDLLLRWASLREDEESAPFPAGGDG-----GVGAWTRDGPFPAALREGLLQALHGAAEDDRRDSALALLASLLRAVGQEWAVEEDVEEADXXXXXXXXXXXXXXXXXXXXXXXXXXKKNRVAKRKRGTFVAFAVRCAAGEVRILLDEALSLFVPAAARGGARASDGDEEAGPGTGQKARGAMGPAGADPSIGIAAEITAAKAAAAGAGGKQGEGQRLSPAPRSPLPASQLKAIKEQRAARLLRMVPVGLGVAESTIAFLCGXXXXXXXXXXXXXKSSKNRWEELPIDTLQDLQKTLVGLFGCVLDFLSEIRRWVLAVSHSTGGDADGGSASAGPSIVDLWALHRLGLECSRVLGVWVAEDPESLPQRFLEALPVLLALKAGEEAPDSDXXXXXXXXXXXXASATVTPTLAAFPGAARYLAGGARAGHAASASSATRPDEALHNILRAMLALSYEPTP 818
BLAST of mRNA_F-serratus_M_contig7272.18502.1 vs. uniprot
Match: A0A6H5KXD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXD7_9PHAE) HSP 1 Score: 422 bits (1085), Expect = 2.070e-131 Identity = 306/725 (42.21%), Postives = 353/725 (48.69%), Query Frame = 1
Query: 187 STVLARCLKLLSGDSDEHKFAGLVMVTKHVPALTASSATDGSTGRGEERSISEAGQLRQICSAVGPNFVHRLLRTAEDGGGSSGSRDGDQTRVIGGASGLSVYQQISLGVLAAFLRDESLVERFIPVAPALVRAIRAANAXXXXXXXXXXXXXXXXLAGSVGGTERLLRAGAAAAVVARLVAASVERTSRHQKSTQSGGG----------------------------------------------------------GMEETKG------SAGDATRKEFCSTPAGLGESDAMARVEVTAFAFVARALEASSGNCLGVRELTNIAQAFRDDPTPVKFEFMDLLLRWAVLQE---------GDGDTCADSVGAWTRQGPFPAALREGLLQGLHGAAKDKHRDSALALLASLLRALGQEWAVEEEAEAETATVREQGN------------RGSARNLSSAGKTMARKRGTFVAFAIRCAAGEVRILLDECVSTLLPGVA-------------GDATGESTDASHDDC---------------------KRGAAGSWY-----------------------------------------------------------------WDELPSKTLLDLQKTLTGLFGCVLDFLAEIRPWIVSDDLAASGSG----RSPSPSMLDLWTVQRVGLACSHALGVWVAEDPEGLPQRFVDTLPVMLALKADAEA 1797
S VLA+CLKLL G SDEHKFAGLVMVTKHVPALTA + + G + + G+LRQIC+AVGP F+HRLLRT D GS D +GG LSVYQQI+LGVLAA +DESLV +F+P APALVRA+RAA+A +AG GG RLLRAGAA AVV+RL AAS ER +R + GG + KG + GD TPA ++ R E A AFV RALEAS G CLG RELT IA+AFRDDPTP KF F+DLLLRWA L+E GDG VGAW R GPFPAALREGLLQ LHGAA+D RDSALALLASLLRA+GQ WAVEE+ E E GN + RKRGTFVAFA+RCAAGEVRILLDE +S +P A G TG+ + K G G W ELP TL DLQKTL GLFGCVLDFL+EIR W+++ + G S PS++DLW + R+GL CS LGVWVAEDPE LPQRF++ LPV+LAL A EA
Sbjct: 44 SAVLAQCLKLLKGQSDEHKFAGLVMVTKHVPALTAYESVRADSS-GSPSASAGGGELRQICNAVGPAFLHRLLRTPGDKSSGGGSGDDCGGGAVGG---LSVYQQIALGVLAALFQDESLVPKFVPTAPALVRALRAADAATQTQGLCDALYCTQAIAGVPGGMARLLRAGAAPAVVSRLSAASGERAARANEERDFGGDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPKGDGRGGPAGGD--------TPAAEAAAE---RSEALALAFVGRALEASGGGCLGSRELTAIAEAFRDDPTPAKFGFLDLLLRWASLREEESAPFPAGGDG-----GVGAWARDGPFPAALREGLLQALHGAAEDDRRDSALALLASLLRAVGQGWAVEEDGE-------EPGNGEGXXXXXXXXXXXXXXXXXKKKRVAKRKRGTFVAFAVRCAAGEVRILLDEALSLFVPAAARGGARASDGDEDAGPGTGQKARGAMGPAGADPSIGIAAEIAAAKAAATGKGGEQGEGQRPSPAPRCPLPASQLKAIKEQRAARLLRMVPVGLGVAESTIAFLCGXXXXXXXXXXXXXXXXXNRWQELPIDTLQDLQKTLVGLFGCVLDFLSEIRRWVLAVSHSTGGDADIGSASAGPSIVDLWALHRLGLECSRVLGVWVAEDPESLPQRFLEALPVLLALNAGEEA 741
BLAST of mRNA_F-serratus_M_contig7272.18502.1 vs. uniprot
Match: A0A6H5KY02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY02_9PHAE) HSP 1 Score: 262 bits (670), Expect = 6.430e-76 Identity = 167/299 (55.85%), Postives = 188/299 (62.88%), Query Frame = 3
Query: 1995 PLAVMVEQGVTARLSRLAFDGSVAIAALITAGAAATP--------PVPPPEHASEAVRSPFVTACGLLNNILNSAGHLPWPQ--------TSAVLRRVAVRAGKKGELCAPRALSHPVLAHPETGECLVSLAEVAGLAGAARRAGGGARWRLLAGQATLVIMIVACS-----GLAPGDGLVDRRSR-W-GQEGEGRREDRSCSAPSVWESMAQAVDEALGSLSPAPGRGLIG-------TRDEEEAPYEEGAIWQWCLECARAIEAETGGADENPYVAVGIMPWKVLRSLGEASADCRI 2801
PLA MVE+GV ARL+RLA G AIAAL+ G ++ P PPE SEAVRSP V+ACGLL NIL SAGHL WP+ + A RR A R +G APR HPVL HP G+CL SLAEVAG RRAGGGARWRLLA ATLV+M VA + GLAP GL RR R W G+EG+ + S PSVWE MA+AVDEALGSLS PGRGLIG EA YEEGAIWQWCLECAR IE GG N YV+ G++P ++L SL EASAD RI
Sbjct: 78 PLAAMVEEGVAARLARLAAAGLPAIAALLLLGRTSSSADDDGGELPTSPPEQVSEAVRSPLVSACGLLTNILTSAGHLAWPEDRPAAAGGSGAARRRGAGRQQPRG---APR---HPVLGHPGMGQCLASLAEVAGAXXXXRRAGGGARWRLLAAHATLVVMTVARAATPGNGLAPAAGLAGRRPRRWSGEEGDPPGDGAS---PSVWEGMARAVDEALGSLSATPGRGLIGGGRGGTGEXXXXEASYEEGAIWQWCLECAREIEVAPGGVTGNAYVSCGVVPRRLLSSLKEASADGRI 367
BLAST of mRNA_F-serratus_M_contig7272.18502.1 vs. uniprot
Match: A0A835ZIL7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIL7_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 4.820e-17 Identity = 116/392 (29.59%), Postives = 156/392 (39.80%), Query Frame = 1
Query: 259 MVTKHVPALTASSATDGSTGRGEERSISEAGQLRQICSAVGPNFVHRLLRTAEDGGGSSGSRDGDQTRVIGGASGLSVYQQISLGVLAAFLRDESLVERFIPVAPALVRAIRAANAXXXXXXXXXXXXXXXXLAGSVGGTERLLRAGAAAAVVARLVAASVERTSRHQKSTQSGGGGMEETKGSAGDATRKEFCSTPAGLGESDAMARVEVTAFAFVARALEASSGNCLGVRELTNIAQAFRDDPTPVKF-EFMDLLLRWAV-LQEGDGDTCADSVGAWTRQG-----PFPAALREGLLQGLHGAAKDKHRDSALALLASLLRALGQEWAVEEEAEAETATVREQGNRGSARNLSSAGKTMARKRGTFVAFAIRCAAGEVRILLDECVSTLL 1413
MV KHV AL ++AT T + A+GP+FV RLLRTA +GG V+ A+ LG L+ L LVRA RA +A +RL AA A++ A+ ++ + T + GG +A +A G S+ E A + ++A+ G CLG +L +A F DP+ + + LL WA L G + GA F +R GLL+ LHG+A + RD+AL LLA+LLRALG+ WAVE G+ KRGTFV FA R A EVRILLDE + LL
Sbjct: 1 MVAKHVQALDTATATAAMTA---------------VMGAMGPDFVRRLLRTAGEGGA-----------VLSDAAAC-------LGALSTTLEGLG----------RLVRA-RAPSAI----------------------AQRLRSLTKAAEASAKVQPAAGAPATKPMQPTAAAAGGDVPADAAASEAXXXXXX----GGAASEQRVEFEAAALRCLECCVDATGGACLGAADLAALALVFARDPSGARSRDAARALLHWATALAAARGGSSHGGGGAQRDHALEGGSEFAGLVRSGLLRALHGSAAEAARDAALTLLAALLRALGERWAVE-------------------------GEGAGVKRGTFVRFAARAAGNEVRILLDEALGVLL 297
BLAST of mRNA_F-serratus_M_contig7272.18502.1 vs. uniprot
Match: A0A067KMM9_JATCU (Uncharacterized protein n=3 Tax=Jatropha curcas TaxID=180498 RepID=A0A067KMM9_JATCU) HSP 1 Score: 66.2 bits (160), Expect = 2.220e-7 Identity = 52/148 (35.14%), Postives = 71/148 (47.97%), Query Frame = 1
Query: 169 QQLQKQSTVLARCLKLLSGDSDEHKFAGLVMVTKHVPALTASSATDGSTGRGEERSISEAGQLRQICSAVGPNFVHRLLRTAEDGGGSSGSRDGDQTRVIGGASGLSVYQQISLGVLAAFLRDESLV--ERFIPVAPALVRAIRAANA 606
QQ Q+QS L CLKLL G+ DE + AGL++VTK +S LR++ AVG +F+ RLLRT G G+ GD GA+ Y Q+S+ +LAAF R + E I PA++ I N+
Sbjct: 4 QQEQEQSPALDDCLKLLKGERDEQRLAGLLLVTKFCKGHDTAS-------------------LRRVYEAVGVHFLDRLLRT----GMGKGTGSGD------GANNRDAYLQLSVTLLAAFCRIPEIASSEVMILKIPAILEIISKLNS 122
BLAST of mRNA_F-serratus_M_contig7272.18502.1 vs. uniprot
Match: W4H0I0_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H0I0_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 2.240e-7 Identity = 43/126 (34.13%), Postives = 66/126 (52.38%), Query Frame = 1
Query: 196 LARCLKLLSGDSDEHKFAGLVMVTKHVPALTASSATDGSTGRGEERSISEAGQLRQ-ICSAVGPNFVHRLLRTAEDGGGSSGSRDGDQTRVIGGASGLSVYQQISLGVLAAFLRDESLVERFIPVA 570
LA+CL +L+G SDEHKFAGL+MVTKH+ E+ S + ++R+ + G +F RLL T G G + + DGD +S +Q ++L ++++F +D SL F A
Sbjct: 15 LAQCLAILAGKSDEHKFAGLLMVTKHLQT--------------EDESALQ--RIRKAVMDTAGISFFVRLLHTQGGGDGDNAAADGD--------GDISPFQALALNLISSFCQDISLAREFATTA 116
BLAST of mRNA_F-serratus_M_contig7272.18502.1 vs. uniprot
Match: UPI000901E175 (neurochondrin-like n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000901E175) HSP 1 Score: 58.5 bits (140), Expect = 2.300e-6 Identity = 40/119 (33.61%), Postives = 56/119 (47.06%), Query Frame = 1
Query: 178 QKQSTVLARCLKLLSGDSDEHKFAGLVMVTKHVPALTASSATDGSTGRGEERSISEAGQLRQICSAVGPNFVHRLLRTAEDGGGSSGSRDGDQTRVIGGASGLSVYQQISLGVLAAFLR 534
Q Q L CLKLL G+ DE + AGL++VTK S + G ++++ AVG F+HRLLRT G + G R ++ Y Q+S+ VL+AF R
Sbjct: 13 QSQQPSLNDCLKLLRGERDEQRLAGLLLVTKFC-------------------SKDDHGAIQKVYDAVGAQFLHRLLRTGMGKGEADGGRKENR----------DAYLQLSITVLSAFCR 102
BLAST of mRNA_F-serratus_M_contig7272.18502.1 vs. uniprot
Match: A0A1J7G7X5_LUPAN (Uncharacterized protein n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=A0A1J7G7X5_LUPAN) HSP 1 Score: 63.2 bits (152), Expect = 2.530e-6 Identity = 48/144 (33.33%), Postives = 66/144 (45.83%), Query Frame = 1
Query: 178 QKQSTVLARCLKLLSGDSDEHKFAGLVMVTKHVPALTASSATDGSTGRGEERSISEAGQLRQICSAVGPNFVHRLLRTAEDGGGSSGSRDGDQTRVIGGASGLSVYQQISLGVLAAFLRDESL--VERFIPVAPALVRAIRAAN 603
Q+QS L CLKLL G+ DE + AGL++VTK A SS LR++ AVGP F+ RLLRT G T GG + Y +S+ VLA+F R + +E + P ++ A+ N
Sbjct: 421 QEQSPNLEDCLKLLKGERDEQRLAGLLLVTKFCKAEDHSS-------------------LRRVYDAVGPRFLERLLRTGM----------GKGTVTSGGDNNRDAYLCLSVTVLASFCRVPEIASLEDMVLKVPLILEAMSTRN 535
BLAST of mRNA_F-serratus_M_contig7272.18502.1 vs. uniprot
Match: A0A835MFX0_9ROSI (Uncharacterized protein n=1 Tax=Salix dunnii TaxID=1413687 RepID=A0A835MFX0_9ROSI) HSP 1 Score: 63.2 bits (152), Expect = 2.670e-6 Identity = 44/122 (36.07%), Postives = 63/122 (51.64%), Query Frame = 1
Query: 169 QQLQKQSTVLARCLKLLSGDSDEHKFAGLVMVTKHVPALTASSATDGSTGRGEERSISEAGQLRQICSAVGPNFVHRLLRTAEDGGGSSGSRDGDQTRVIGGASGLSVYQQISLGVLAAFLR 534
+Q Q+Q++ L CLKLL G+ DE + AGL++VTK + G LR++ +AVG +F+ RLLRT G GS G+ R ++Y Q+S+ VLAAF R
Sbjct: 495 EQQQQQTSSLDDCLKLLKGERDEQRLAGLLLVTKFCNG-------------------DDLGSLRKVYNAVGAHFLDRLLRT----GMGKGSVSGEDNR--------NMYLQLSVTVLAAFCR 585
BLAST of mRNA_F-serratus_M_contig7272.18502.1 vs. uniprot
Match: A0A6A4Q540_LUPAL (Putative neurochondrin n=3 Tax=Lupinus TaxID=3869 RepID=A0A6A4Q540_LUPAL) HSP 1 Score: 62.8 bits (151), Expect = 2.700e-6 Identity = 48/144 (33.33%), Postives = 69/144 (47.92%), Query Frame = 1
Query: 178 QKQSTVLARCLKLLSGDSDEHKFAGLVMVTKHVPALTASSATDGSTGRGEERSISEAGQLRQICSAVGPNFVHRLLRTAEDGGGSSGSRDGDQTRVIGGASGLSVYQQISLGVLAAFLRDESL--VERFIPVAPALVRAIRAAN 603
Q+Q+ L CLKLL G+ DE + AGL++VTK A SS LR++ +AVGP F+ RLLRT G S + GD R Y ++S+ VLA+F R + +E + P ++ A+ N
Sbjct: 34 QEQNPNLEDCLKLLKGERDEQRLAGLLLVTKFCKAEDHSS-------------------LRRVYNAVGPRFLERLLRTGM--GKGSVTSGGDNNR--------DAYLRLSVTVLASFCRVPEIASLEETVLKVPLILEAMSTRN 148 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7272.18502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig7272.18502.1 >prot_F-serratus_M_contig7272.18502.1 ID=prot_F-serratus_M_contig7272.18502.1|Name=mRNA_F-serratus_M_contig7272.18502.1|organism=Fucus serratus male|type=polypeptide|length=643bp MEALNDHVHSPSTNTSAPSLPPEEQSPGHEQQQQLQKQSTVLARCLKLLSback to top mRNA from alignment at F-serratus_M_contig7272:3467..8157+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig7272.18502.1 ID=mRNA_F-serratus_M_contig7272.18502.1|Name=mRNA_F-serratus_M_contig7272.18502.1|organism=Fucus serratus male|type=mRNA|length=4691bp|location=Sequence derived from alignment at F-serratus_M_contig7272:3467..8157+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig7272:3467..8157+ >mRNA_F-serratus_M_contig7272.18502.1 ID=mRNA_F-serratus_M_contig7272.18502.1|Name=mRNA_F-serratus_M_contig7272.18502.1|organism=Fucus serratus male|type=CDS|length=3858bp|location=Sequence derived from alignment at F-serratus_M_contig7272:3467..8157+ (Fucus serratus male)back to top |