mRNA_F-serratus_M_contig727.18501.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig727.18501.1
Unique NamemRNA_F-serratus_M_contig727.18501.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig727.18501.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 9.560e-6
Identity = 24/63 (38.10%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:  118 FMVMPIVYGPSEATFHPDRPAKLRFFAGYLEDLQNELREEGNGHCSNEDVKKHLRAVYEPLIS 306
            F+ M  V+GP EA F  ++PAKLRFF G++++         +   ++ED++KH+   Y PL S
Sbjct: 1278 FLAMTFVHGPKEAIFLDNKPAKLRFFMGFVDEFA--AGASSDRVVNDEDIEKHILETYRPLTS 1338
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BLAST of mRNA_F-serratus_M_contig727.18501.1 vs. uniprot
Match: D8LF63_ECTSI (eIF3_p135 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF63_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 3.290e-5
Identity = 24/67 (35.82%), Postives = 37/67 (55.22%), Query Frame = 1 
Query:  106 NTSTFMVMPIVYGPSEATFHPDRPAKLRFFAGYLEDLQNELREEGNGHCSNEDVKKHLRAVYEPLIS 306
            +T  F+ M  V+GP   TF  D+PAKLRFF GY+++             S+E++++ +   Y PL S
Sbjct:  921 STEEFLAMNFVHGPEGVTFPEDKPAKLRFFLGYVDESTPAGEGLDQVAVSDEEIERDILKTYRPLTS 987
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig727.18501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K4D0_9PHAE9.560e-638.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF63_ECTSI3.290e-535.82eIF3_p135 domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig727contigF-serratus_M_contig727:328956..330028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size309
Cds size309
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig727.18501.1prot_F-serratus_M_contig727.18501.1Fucus serratus malepolypeptideF-serratus_M_contig727 328956..330028 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932214.7679-CDS-F-serratus_M_contig727:328955..3290211622932214.7679-CDS-F-serratus_M_contig727:328955..329021Fucus serratus maleCDSF-serratus_M_contig727 328956..329021 -
1690964202.2125943-CDS-F-serratus_M_contig727:328955..3290211690964202.2125943-CDS-F-serratus_M_contig727:328955..329021Fucus serratus maleCDSF-serratus_M_contig727 328956..329021 -
1622932214.7911835-CDS-F-serratus_M_contig727:329324..3295111622932214.7911835-CDS-F-serratus_M_contig727:329324..329511Fucus serratus maleCDSF-serratus_M_contig727 329325..329511 -
1690964202.2272625-CDS-F-serratus_M_contig727:329324..3295111690964202.2272625-CDS-F-serratus_M_contig727:329324..329511Fucus serratus maleCDSF-serratus_M_contig727 329325..329511 -
1622932214.8142416-CDS-F-serratus_M_contig727:329972..3300281622932214.8142416-CDS-F-serratus_M_contig727:329972..330028Fucus serratus maleCDSF-serratus_M_contig727 329973..330028 -
1690964202.2387707-CDS-F-serratus_M_contig727:329972..3300281690964202.2387707-CDS-F-serratus_M_contig727:329972..330028Fucus serratus maleCDSF-serratus_M_contig727 329973..330028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig727.18501.1

>prot_F-serratus_M_contig727.18501.1 ID=prot_F-serratus_M_contig727.18501.1|Name=mRNA_F-serratus_M_contig727.18501.1|organism=Fucus serratus male|type=polypeptide|length=103bp
VIKPEIKIVECSQNRDSSRTHEELLALSSKDVSSENTSTFMVMPIVYGPS
EATFHPDRPAKLRFFAGYLEDLQNELREEGNGHCSNEDVKKHLRAVYEPL
ISA
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mRNA from alignment at F-serratus_M_contig727:328956..330028-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig727.18501.1 ID=mRNA_F-serratus_M_contig727.18501.1|Name=mRNA_F-serratus_M_contig727.18501.1|organism=Fucus serratus male|type=mRNA|length=1073bp|location=Sequence derived from alignment at F-serratus_M_contig727:328956..330028- (Fucus serratus male)
GTTATAAAGCCAGAGATAAAAATCGTGGAATGCAGCCAAAATCGAGACTC
TTCAAGGTAAAGCAATAAGGCCGCGGGATACAAATTGGGTGCTTCTGGTA
TTTTCTGTGTCTGACAAAACCCAAGAACCTGACACATATGGCAAAAGAGA
AGTGCTTCCATTTCGGCCATCTAAATTTATCGTCTAGGAGTTCATGCGTC
TCCATGTTGGCTTTTCCCTTGTACATGCTAATATGGGATAGCCTGTCGCG
AGGTACATTCGCTTGGAGTGTGGCGCACGCCCTTCAGCAAAATCTATTGC
GGGGAGGCTGCTGGTCAGTACTGGTCGTAAAGCTGATATTTACTGATCCA
CTCTTGGACGATTATTTTGACCGTGTTTGGAAAACCCTATAATAGTCGAT
GTGAGGTCAACTTGATATACTCTGAAAAGCGCTCAAGATCTTCTACTGGT
ATATAATCCAACAACAACTACTATTAATCCAACTACTACTACTACTACTA
CTACTACTGTGCTACAGAACGCACGAAGAACTGCTTGCGCTGAGCTCAAA
GGACGTCTCCAGTGAAAACACTTCCACATTTATGGTAATGCCTATCGTGT
ATGGCCCATCGGAGGCTACCTTCCACCCGGATAGACCAGCCAAGCTTCGT
TTCTTCGCCGGCTATCTCGAAGACCTTCAGAATGAACTTCGAGAGGAGGG
TAACGTGAGTCAAGAAAGCATCTTTGAGCGCTATTATCATGTAACTCCGA
TGGTCATTATCGAATGTAGCTTACGTACGAGTTCTCGAGCTCGTTGTTTG
TGCTCTTTAATTCTTAGCTTTCATTGTTTCATTGTTTGTGCTCTTTAATT
ATTATAATTTGTTTCTACAAACTCCTCGCGGTTATAGCTGCATCAAACGG
TCAAACTGCGACATCCCTGCTCTCTATATAAGCATTCTTACATACTAGCA
TGGCTTCGTATCTATTAATTACCATGCATTCATCCTACTTCTTCCCTCGT
GAAGCAGGGCCATTGCTCGAACGAAGACGTAAAAAAGCACCTACGGGCCG
TTTACGAACCTCTCATCAGTGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig727:328956..330028-

>mRNA_F-serratus_M_contig727.18501.1 ID=mRNA_F-serratus_M_contig727.18501.1|Name=mRNA_F-serratus_M_contig727.18501.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig727:328956..330028- (Fucus serratus male)
GTTATAAAGCCAGAGATAAAAATCGTGGAATGCAGCCAAAATCGAGACTC
TTCAAGGTTATAAAGCCAGAGATAAAAATCGTGGAATGCAGCCAAAATCG
AGACTCTTCAAGAACGCACGAAGAACTGCTTGCGCTGAGCTCAAAGGACG
TCTCCAGTGAAAACACTTCCACATTTATGGTAATGCCTATCGTGTATGGC
CCATCGGAGGCTACCTTCCACCCGGATAGACCAGCCAAGCTTCGTTTCTT
CGCCGGCTATCTCGAAGACCTTCAGAATGAACTTCGAGAGGAGGGTAACA
ACGCACGAAGAACTGCTTGCGCTGAGCTCAAAGGACGTCTCCAGTGAAAA
CACTTCCACATTTATGGTAATGCCTATCGTGTATGGCCCATCGGAGGCTA
CCTTCCACCCGGATAGACCAGCCAAGCTTCGTTTCTTCGCCGGCTATCTC
GAAGACCTTCAGAATGAACTTCGAGAGGAGGGTAACGGCCATTGCTCGAA
CGAAGACGTAAAAAAGCACCTACGGGCCGTTTACGAACCTCTCATCAGTG
CGGGCCATTGCTCGAACGAAGACGTAAAAAAGCACCTACGGGCCGTTTAC
GAACCTCTCATCAGTGCG
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