mRNA_F-serratus_M_contig7261.18500.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7261.18500.1
Unique NamemRNA_F-serratus_M_contig7261.18500.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7261.18500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7261contigF-serratus_M_contig7261:19312..19687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size233
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932214.6975517-CDS-F-serratus_M_contig7261:19311..194641622932214.6975517-CDS-F-serratus_M_contig7261:19311..19464Fucus serratus maleCDSF-serratus_M_contig7261 19312..19464 -
1690964202.184688-CDS-F-serratus_M_contig7261:19311..194641690964202.184688-CDS-F-serratus_M_contig7261:19311..19464Fucus serratus maleCDSF-serratus_M_contig7261 19312..19464 -
1622932214.7164233-CDS-F-serratus_M_contig7261:19609..196871622932214.7164233-CDS-F-serratus_M_contig7261:19609..19687Fucus serratus maleCDSF-serratus_M_contig7261 19610..19687 -
1690964202.1978183-CDS-F-serratus_M_contig7261:19609..196871690964202.1978183-CDS-F-serratus_M_contig7261:19609..19687Fucus serratus maleCDSF-serratus_M_contig7261 19610..19687 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7261.18500.1prot_F-serratus_M_contig7261.18500.1Fucus serratus malepolypeptideF-serratus_M_contig7261 19312..19687 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7261.18500.1

>prot_F-serratus_M_contig7261.18500.1 ID=prot_F-serratus_M_contig7261.18500.1|Name=mRNA_F-serratus_M_contig7261.18500.1|organism=Fucus serratus male|type=polypeptide|length=77bp
VRKDHVYFIRNADKLYGLMDTPFGLKPGEGRGENLTKMEVAVNLLRCLKH
RHGGEDWKPKWEFEGEFVWLTALEVS*
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mRNA from alignment at F-serratus_M_contig7261:19312..19687-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7261.18500.1 ID=mRNA_F-serratus_M_contig7261.18500.1|Name=mRNA_F-serratus_M_contig7261.18500.1|organism=Fucus serratus male|type=mRNA|length=376bp|location=Sequence derived from alignment at F-serratus_M_contig7261:19312..19687- (Fucus serratus male)
GTGCGGAAGGACCACGTATACTTCATCCGGAATGCGGATAAACTTTACGG
GCTCATGGACACGCCGTTCGGATTGAAGGTGAGAAGCATGCTGTACGTTC
TAGTCAGCTGGTGTGTGTAGGTTGACCACTGTTTTTTTCACAACGTGAAG
CGAGGCGTATTTTATCGACATAAACTTCAATTTCGCTGCCGTTCGTCTGT
GTGATCCGTCGTTGCTTCGCGAGCCGGGGGAAGGGCGTGGGGAAAACCTG
ACTAAGATGGAAGTAGCGGTAAACCTCCTTCGGTGTCTAAAGCATAGGCA
CGGTGGCGAAGACTGGAAACCTAAATGGGAGTTTGAGGGAGAGTTTGTCT
GGCTCACAGCGTTGGAGGTGAGTTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig7261:19312..19687-

>mRNA_F-serratus_M_contig7261.18500.1 ID=mRNA_F-serratus_M_contig7261.18500.1|Name=mRNA_F-serratus_M_contig7261.18500.1|organism=Fucus serratus male|type=CDS|length=462bp|location=Sequence derived from alignment at F-serratus_M_contig7261:19312..19687- (Fucus serratus male)
GTGCGGAAGGACCACGTATACTTCATCCGGAATGCGGATAAACTTTACGG
GCTCATGGACACGCCGTTCGGATTGAAGGTGCGGAAGGACCACGTATACT
TCATCCGGAATGCGGATAAACTTTACGGGCTCATGGACACGCCGTTCGGA
TTGAAGCCGGGGGAAGGGCGTGGGGAAAACCTGACTAAGATGGAAGTAGC
GGTAAACCTCCTTCGGTGTCTAAAGCATAGGCACGGTGGCGAAGACTGGA
AACCTAAATGGGAGTTTGAGGGAGAGTTTGTCTGGCTCACAGCGTTGGAG
GTGAGTTGACCGGGGGAAGGGCGTGGGGAAAACCTGACTAAGATGGAAGT
AGCGGTAAACCTCCTTCGGTGTCTAAAGCATAGGCACGGTGGCGAAGACT
GGAAACCTAAATGGGAGTTTGAGGGAGAGTTTGTCTGGCTCACAGCGTTG
GAGGTGAGTTGA
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