mRNA_F-serratus_M_contig726.18490.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig726.18490.1
Unique NamemRNA_F-serratus_M_contig726.18490.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig726.18490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig726contigF-serratus_M_contig726:176645..176989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig726.18490.1prot_F-serratus_M_contig726.18490.1Fucus serratus malepolypeptideF-serratus_M_contig726 176653..176967 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932212.8259897-UTR-F-serratus_M_contig726:176644..1766521622932212.8259897-UTR-F-serratus_M_contig726:176644..176652Fucus serratus maleUTRF-serratus_M_contig726 176645..176652 +
1690964201.2815208-UTR-F-serratus_M_contig726:176644..1766521690964201.2815208-UTR-F-serratus_M_contig726:176644..176652Fucus serratus maleUTRF-serratus_M_contig726 176645..176652 +
1622932212.8601778-UTR-F-serratus_M_contig726:176967..1769891622932212.8601778-UTR-F-serratus_M_contig726:176967..176989Fucus serratus maleUTRF-serratus_M_contig726 176968..176989 +
1690964201.3025138-UTR-F-serratus_M_contig726:176967..1769891690964201.3025138-UTR-F-serratus_M_contig726:176967..176989Fucus serratus maleUTRF-serratus_M_contig726 176968..176989 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932212.8418229-CDS-F-serratus_M_contig726:176652..1769671622932212.8418229-CDS-F-serratus_M_contig726:176652..176967Fucus serratus maleCDSF-serratus_M_contig726 176653..176967 +
1690964201.2919335-CDS-F-serratus_M_contig726:176652..1769671690964201.2919335-CDS-F-serratus_M_contig726:176652..176967Fucus serratus maleCDSF-serratus_M_contig726 176653..176967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig726.18490.1

>prot_F-serratus_M_contig726.18490.1 ID=prot_F-serratus_M_contig726.18490.1|Name=mRNA_F-serratus_M_contig726.18490.1|organism=Fucus serratus male|type=polypeptide|length=105bp
MSTSSTIHRATRPHLNHVQPTRRMRFAPNARGERSWTPSRLALRIKPLIF
SPPPRHRTVWLIPRNIALSPALVLIFPSRRALIQCQAVSLYSTSRALIRC
LQDS*
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mRNA from alignment at F-serratus_M_contig726:176645..176989+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig726.18490.1 ID=mRNA_F-serratus_M_contig726.18490.1|Name=mRNA_F-serratus_M_contig726.18490.1|organism=Fucus serratus male|type=mRNA|length=345bp|location=Sequence derived from alignment at F-serratus_M_contig726:176645..176989+ (Fucus serratus male)
CTTCCCCGATGTCGACCTCTTCAACTATCCATCGCGCCACGAGACCACAC
CTAAACCACGTTCAGCCAACCCGTAGAATGCGCTTCGCGCCAAATGCACG
TGGGGAACGTTCCTGGACTCCCTCCCGACTTGCGTTAAGGATAAAACCTC
TCATATTTTCTCCACCCCCGCGTCATCGTACCGTATGGCTCATCCCCCGC
AACATCGCATTGTCACCTGCGCTTGTGCTTATTTTTCCCAGCAGACGGGC
ATTGATCCAATGTCAAGCTGTCAGCCTCTACTCTACGAGCCGGGCGCTAA
TCCGATGCCTCCAAGATTCCTGACAGTCTCAACGACGTCTGCACT
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Coding sequence (CDS) from alignment at F-serratus_M_contig726:176645..176989+

>mRNA_F-serratus_M_contig726.18490.1 ID=mRNA_F-serratus_M_contig726.18490.1|Name=mRNA_F-serratus_M_contig726.18490.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig726:176645..176989+ (Fucus serratus male)
ATGTCGACCTCTTCAACTATCCATCGCGCCACGAGACCACACCTAAACCA
CGTTCAGCCAACCCGTAGAATGCGCTTCGCGCCAAATGCACGTGGGGAAC
GTTCCTGGACTCCCTCCCGACTTGCGTTAAGGATAAAACCTCTCATATTT
TCTCCACCCCCGCGTCATCGTACCGTATGGCTCATCCCCCGCAACATCGC
ATTGTCACCTGCGCTTGTGCTTATTTTTCCCAGCAGACGGGCATTGATCC
AATGTCAAGCTGTCAGCCTCTACTCTACGAGCCGGGCGCTAATCCGATGC
CTCCAAGATTCCTGAATGTCGACCTCTTCAACTATCCATCGCGCCACGAG
ACCACACCTAAACCACGTTCAGCCAACCCGTAGAATGCGCTTCGCGCCAA
ATGCACGTGGGGAACGTTCCTGGACTCCCTCCCGACTTGCGTTAAGGATA
AAACCTCTCATATTTTCTCCACCCCCGCGTCATCGTACCGTATGGCTCAT
CCCCCGCAACATCGCATTGTCACCTGCGCTTGTGCTTATTTTTCCCAGCA
GACGGGCATTGATCCAATGTCAAGCTGTCAGCCTCTACTCTACGAGCCGG
GCGCTAATCCGATGCCTCCAAGATTCCTGA
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