mRNA_F-serratus_M_contig7251.18486.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig7251.18486.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE) HSP 1 Score: 153 bits (386), Expect = 1.620e-41 Identity = 69/133 (51.88%), Postives = 93/133 (69.92%), Query Frame = 1
Query: 1 LWHRRMGHLNRKSLDLLKKVNSNGVSFEGTVPDCDVCAVGKSRQRAHPKTADQHVQRSFQLVFTDLMGQFTPEALGGYKYVSKISDEHTRWTGVYLLKSKDGALHTFQSFVQSMVIPSGVRVERLRADKGGEF 399
LWHRR+GH++ +SLD+L+KV NGV + G + CDVCAVG S+Q+ HPK A R FQLV TDLMG F+P ALGG+ Y+ K D+H +W V+L+K K + Q F QS++ P +R+E +RADKGGE+
Sbjct: 268 LWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEY 400
BLAST of mRNA_F-serratus_M_contig7251.18486.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE) HSP 1 Score: 145 bits (366), Expect = 1.080e-37 Identity = 67/133 (50.38%), Postives = 88/133 (66.17%), Query Frame = 1
Query: 1 LWHRRMGHLNRKSLDLLKKVNSNGVSFEGTVPDCDVCAVGKSRQRAHPKTADQHVQRSFQLVFTDLMGQFTPEALGGYKYVSKISDEHTRWTGVYLLKSKDGALHTFQSFVQSMVIPSGVRVERLRADKGGEF 399
LWHRRMGH+N KSLD+L++ ++G+ + G V DC C +GKS Q+ HPK A V FQLVF D +G FTP ALGG+KY +K D+HT+W V L+K K ++ + F + VIP R+ LRADKG EF
Sbjct: 575 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEF 707
BLAST of mRNA_F-serratus_M_contig7251.18486.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 145 bits (366), Expect = 1.100e-37 Identity = 67/133 (50.38%), Postives = 88/133 (66.17%), Query Frame = 1
Query: 1 LWHRRMGHLNRKSLDLLKKVNSNGVSFEGTVPDCDVCAVGKSRQRAHPKTADQHVQRSFQLVFTDLMGQFTPEALGGYKYVSKISDEHTRWTGVYLLKSKDGALHTFQSFVQSMVIPSGVRVERLRADKGGEF 399
LWHRRMGH+N KSLD+L++ ++G+ + G V DC C +GKS Q+ HPK A V FQLVF D +G FTP ALGG+KY +K D+HT+W V L+K K ++ + F + VIP R+ LRADKG EF
Sbjct: 697 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEF 829
BLAST of mRNA_F-serratus_M_contig7251.18486.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 145 bits (366), Expect = 1.100e-37 Identity = 67/133 (50.38%), Postives = 88/133 (66.17%), Query Frame = 1
Query: 1 LWHRRMGHLNRKSLDLLKKVNSNGVSFEGTVPDCDVCAVGKSRQRAHPKTADQHVQRSFQLVFTDLMGQFTPEALGGYKYVSKISDEHTRWTGVYLLKSKDGALHTFQSFVQSMVIPSGVRVERLRADKGGEF 399
LWHRRMGH+N KSLD+L++ ++G+ + G V DC C +GKS Q+ HPK A V FQLVF D +G FTP ALGG+KY +K D+HT+W V L+K K ++ + F + VIP R+ LRADKG EF
Sbjct: 575 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEF 707
BLAST of mRNA_F-serratus_M_contig7251.18486.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE) HSP 1 Score: 142 bits (359), Expect = 9.460e-37 Identity = 67/138 (48.55%), Postives = 89/138 (64.49%), Query Frame = 1
Query: 1 LWHRRMGHLNRKSLDLLKKVNSNGVSFEGTVPDCDVCAVGKSRQRAHPKTADQHVQRSFQLVFTDLMGQFTPEALGGYKYVSKISDEHTRWTGVYLLKSKDGALHTFQSFVQSMVIPSGVRVERLRADKGGEFIGNDF 414
LWHRRMGH+N KSLD+L+K +NGV V DC CA+GKS Q+ HPK A V+R FQLVF D +G FTP ALGG+KY +K D+ T+W + L+K K ++ + F + V+P+G + LR D G EF +F
Sbjct: 528 LWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDKTCSVDSLALFNKGTVVPTGEGIHCLRGDHGTEFTSAEF 665
BLAST of mRNA_F-serratus_M_contig7251.18486.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE) HSP 1 Score: 137 bits (345), Expect = 6.920e-35 Identity = 65/138 (47.10%), Postives = 87/138 (63.04%), Query Frame = 1
Query: 1 LWHRRMGHLNRKSLDLLKKVNSNGVSFEGTVPDCDVCAVGKSRQRAHPKTADQHVQRSFQLVFTDLMGQFTPEALGGYKYVSKISDEHTRWTGVYLLKSKDGALHTFQSFVQSMVIPSGVRVERLRADKGGEFIGNDF 414
LWHRRMGH+N KSLD+L+K NGV + G V DC VC +GKS Q+ HPK V R FQ V D +G FTP ALGG+KY +K D+ T+W + L+K + ++ + F + V+P+G R+ LR D G EF +F
Sbjct: 288 LWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDQACSVDSLALFKKGTVVPTGERIHCLRGDPGTEFTSAEF 425
BLAST of mRNA_F-serratus_M_contig7251.18486.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE) HSP 1 Score: 134 bits (336), Expect = 1.180e-33 Identity = 64/134 (47.76%), Postives = 84/134 (62.69%), Query Frame = 1
Query: 1 LWHRRMGHLNRKSLDLLKKVNSNGVSFEGTVPDCDVCAVGKSRQRAHPKTADQHVQRSFQLVFTDLMGQFTPEALGGYKYVSKISDEHTRWTGVYLLKSKDG-ALHTFQSFVQSMVIPSGVRVERLRADKGGEF 399
LWHRRMGH+N KSLD+L++ ++G+ + G V DC C +GKS Q+ HPK A V FQLVF D G FT LGG+KY +K D+HT+W V L+K K ++ + F + VIP R+ LRA KG EF
Sbjct: 480 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTKWKEVVLMKDKTSCSIDGLELFNKGTVIPRSARIHVLRAGKGAEF 613
BLAST of mRNA_F-serratus_M_contig7251.18486.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 127 bits (319), Expect = 2.230e-31 Identity = 62/138 (44.93%), Postives = 85/138 (61.59%), Query Frame = 1
Query: 1 LWHRRMGHLNRKSLDLLKKVNSNGVSFEGTVPDCDVCAVGKSRQRAHPKTADQHVQRSFQLVFTDLMGQFTPEALGGYKYVSKISDEHTRWTGVYLLKSKDGALHTFQSFVQSMVIPSGVRVERLRADKGGEFIGNDF 414
LWHRRMGH+N K+LD+L+K NGV + G V C VC +GKS Q+ HPK A V R FQ D +G F P ALGG KY +K D+ T+W + L+K + ++ + F + V+P+G R+ LR D+G EF +F
Sbjct: 48 LWHRRMGHINGKNLDVLRKEQVNGVDYTGDVKYCSVCPLGKSAQQPHPKQATYGVLRPFQ---HDTLGPFAPTALGGSKYATKFVDQQTKWAEIVLMKDETCSVDSLALFNKGTVVPTGERIHCLRGDQGTEFTSAEF 182
BLAST of mRNA_F-serratus_M_contig7251.18486.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE) HSP 1 Score: 122 bits (307), Expect = 9.230e-30 Identity = 56/137 (40.88%), Postives = 85/137 (62.04%), Query Frame = 1
Query: 4 WHRRMGHLNRKSLDLLKKVNSNGVSFEGTVPDCDVCAVGKSRQRAHPKTADQHVQRSFQLVFTDLMGQFTPEALGGYKYVSKISDEHTRWTGVYLLKSKDGALHTFQSFVQSMVIPSGVRVERLRADKGGEFIGNDF 414
WHR + HLN +S++LL+K NGV F ++ CD+CA+ KSRQ AHP+ ++ QLV+TD MG+ TP A GG+ YVSK +D ++ +YLLK+ + ++ + P G R+E +R + GGE + N+F
Sbjct: 311 WHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETVRALHAYNMQVAAPLGRRIEIIRCESGGENVANEF 447
BLAST of mRNA_F-serratus_M_contig7251.18486.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE) HSP 1 Score: 114 bits (284), Expect = 1.040e-28 Identity = 54/140 (38.57%), Postives = 79/140 (56.43%), Query Frame = 1
Query: 4 WHRRMGHLNRKSLDLLKKVNSNGVSFEGTVPDCDVCAVGKSRQRAHPKTADQHVQRSFQLVFTDLMGQFTPEAL---GGYKYVSKISDEHTRWTGVYLLKSKDGALHTFQSFVQSMVIPSGVRVERLRADKGGEFIGNDF 414
WHRR+GHLN +SLD+L+K GV + ++ C VC + K +Q HPK + + + R QLV D MG P A G + Y KI+D++T+ VYLL+ K ++ + G R+E +R DKGGE G++F
Sbjct: 45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEF 184 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7251.18486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig7251.18486.1 >prot_F-serratus_M_contig7251.18486.1 ID=prot_F-serratus_M_contig7251.18486.1|Name=mRNA_F-serratus_M_contig7251.18486.1|organism=Fucus serratus male|type=polypeptide|length=133bp MGHLNRKSLDLLKKVNSNGVSFEGTVPDCDVCAVGKSRQRAHPKTADQHVback to top mRNA from alignment at F-serratus_M_contig7251:14674..15087+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig7251.18486.1 ID=mRNA_F-serratus_M_contig7251.18486.1|Name=mRNA_F-serratus_M_contig7251.18486.1|organism=Fucus serratus male|type=mRNA|length=414bp|location=Sequence derived from alignment at F-serratus_M_contig7251:14674..15087+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig7251:14674..15087+ >mRNA_F-serratus_M_contig7251.18486.1 ID=mRNA_F-serratus_M_contig7251.18486.1|Name=mRNA_F-serratus_M_contig7251.18486.1|organism=Fucus serratus male|type=CDS|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig7251:14674..15087+ (Fucus serratus male)back to top |