mRNA_F-serratus_M_contig7233.18481.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7233.18481.1
Unique NamemRNA_F-serratus_M_contig7233.18481.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7233.18481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7233contigF-serratus_M_contig7233:16789..17097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932212.093079-CDS-F-serratus_M_contig7233:16788..170971622932212.093079-CDS-F-serratus_M_contig7233:16788..17097Fucus serratus maleCDSF-serratus_M_contig7233 16789..17097 +
1690964200.8889124-CDS-F-serratus_M_contig7233:16788..170971690964200.8889124-CDS-F-serratus_M_contig7233:16788..17097Fucus serratus maleCDSF-serratus_M_contig7233 16789..17097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7233.18481.1prot_F-serratus_M_contig7233.18481.1Fucus serratus malepolypeptideF-serratus_M_contig7233 16789..17097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7233.18481.1

>prot_F-serratus_M_contig7233.18481.1 ID=prot_F-serratus_M_contig7233.18481.1|Name=mRNA_F-serratus_M_contig7233.18481.1|organism=Fucus serratus male|type=polypeptide|length=103bp
TSSAHGPPSHRASFAPAQLMPPPSPRSVGHPPSPAPPSDSGWSFNSGPSR
ALQAQYVPPGEFSSSSLSDGEPIGSEGVSYLPSAFVGQPIGVEQVGDVWI
GDS
back to top

mRNA from alignment at F-serratus_M_contig7233:16789..17097+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7233.18481.1 ID=mRNA_F-serratus_M_contig7233.18481.1|Name=mRNA_F-serratus_M_contig7233.18481.1|organism=Fucus serratus male|type=mRNA|length=309bp|location=Sequence derived from alignment at F-serratus_M_contig7233:16789..17097+ (Fucus serratus male)
ACCTCTTCAGCCCACGGACCTCCGTCACATCGAGCCAGTTTCGCACCTGC
CCAGCTGATGCCACCGCCGTCGCCCAGATCCGTTGGGCATCCACCTTCAC
CGGCGCCTCCGTCAGATTCTGGTTGGAGCTTCAACTCCGGGCCATCCCGA
GCTCTACAGGCACAATACGTGCCTCCAGGCGAGTTTTCGAGTTCGAGTTT
GTCTGATGGGGAGCCAATAGGTAGTGAGGGCGTGAGTTACCTTCCTTCGG
CATTTGTTGGACAGCCCATAGGCGTAGAACAAGTTGGAGATGTCTGGATT
GGAGACAGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig7233:16789..17097+

>mRNA_F-serratus_M_contig7233.18481.1 ID=mRNA_F-serratus_M_contig7233.18481.1|Name=mRNA_F-serratus_M_contig7233.18481.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig7233:16789..17097+ (Fucus serratus male)
ACCTCTTCAGCCCACGGACCTCCGTCACATCGAGCCAGTTTCGCACCTGC
CCAGCTGATGCCACCGCCGTCGCCCAGATCCGTTGGGCATCCACCTTCAC
CGGCGCCTCCGTCAGATTCTGGTTGGAGCTTCAACTCCGGGCCATCCCGA
GCTCTACAGGCACAATACGTGCCTCCAGGCGAGTTTTCGAGTTCGAGTTT
GTCTGATGGGGAGCCAATAGGTAGTGAGGGCGTGAGTTACCTTCCTTCGG
CATTTGTTGGACAGCCCATAGGCGTAGAACAAGTTGGAGATGTCTGGATT
GGAGACAGCACCTCTTCAGCCCACGGACCTCCGTCACATCGAGCCAGTTT
CGCACCTGCCCAGCTGATGCCACCGCCGTCGCCCAGATCCGTTGGGCATC
CACCTTCACCGGCGCCTCCGTCAGATTCTGGTTGGAGCTTCAACTCCGGG
CCATCCCGAGCTCTACAGGCACAATACGTGCCTCCAGGCGAGTTTTCGAG
TTCGAGTTTGTCTGATGGGGAGCCAATAGGTAGTGAGGGCGTGAGTTACC
TTCCTTCGGCATTTGTTGGACAGCCCATAGGCGTAGAACAAGTTGGAGAT
GTCTGGATTGGAGACAGC
back to top