mRNA_F-serratus_M_contig723.18480.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig723.18480.1
Unique NamemRNA_F-serratus_M_contig723.18480.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig723.18480.1 vs. uniprot
Match: A0A6H5KR45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR45_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 6.330e-17
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:  148 RLGCVLHILHIAVTAGMTSTFFMGPLGKGPWNEWERDHVFSLLGLV 285
            RLG VLHILHI++TAG TS FFMGPLGKG W+EW   HVFSLLG+V
Sbjct:   67 RLGYVLHILHISITAGFTSVFFMGPLGKGSWHEWGTSHVFSLLGMV 112
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BLAST of mRNA_F-serratus_M_contig723.18480.1 vs. uniprot
Match: A0A6H5KP72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP72_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 5.870e-11
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:  196 MTSTFFMGPLGKGPWNEWERDHVFSLLGLV 285
            MTS +FMGPLGKG W+EWERDHVFSLLG+V
Sbjct:    1 MTSLYFMGPLGKGSWHEWERDHVFSLLGMV 30
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BLAST of mRNA_F-serratus_M_contig723.18480.1 vs. uniprot
Match: A0A6H5KSR2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR2_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 8.670e-11
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:  196 MTSTFFMGPLGKGPWNEWERDHVFSLLGLV 285
            MTS  FMGPLGKG W+EWERDHVFSLLG+V
Sbjct:    1 MTSALFMGPLGKGSWHEWERDHVFSLLGMV 30
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BLAST of mRNA_F-serratus_M_contig723.18480.1 vs. uniprot
Match: A0A6H5L8G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G1_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.890e-10
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:  196 MTSTFFMGPLGKGPWNEWERDHVFSLLGLV 285
            MTS +FMGPLGKG W+EWERDHVFSLLG+V
Sbjct:    1 MTSLYFMGPLGKGSWHEWERDHVFSLLGMV 30
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BLAST of mRNA_F-serratus_M_contig723.18480.1 vs. uniprot
Match: A0A6H5JW26_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW26_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.200e-10
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:  196 MTSTFFMGPLGKGPWNEWERDHVFSLLGLV 285
            MTS  FMGPLGKG W+EWERDHVFSLLG+V
Sbjct:    1 MTSALFMGPLGKGSWHEWERDHVFSLLGMV 30
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BLAST of mRNA_F-serratus_M_contig723.18480.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.370e-10
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:  196 MTSTFFMGPLGKGPWNEWERDHVFSLLGLV 285
            MTS +FMGPLGKG W+EWERDHVFSLLG+V
Sbjct:    1 MTSVYFMGPLGKGSWHEWERDHVFSLLGMV 30
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BLAST of mRNA_F-serratus_M_contig723.18480.1 vs. uniprot
Match: A0A6H5JI13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI13_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 5.980e-10
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:  196 MTSTFFMGPLGKGPWNEWERDHVFSLLGLV 285
            MTS  FMGPLGKG W+EWERDHVFSLLG+V
Sbjct:    1 MTSALFMGPLGKGSWHEWERDHVFSLLGMV 30
[Close]
BLAST of mRNA_F-serratus_M_contig723.18480.1 vs. uniprot
Match: A0A6H5KH75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH75_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 8.330e-10
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:  196 MTSTFFMGPLGKGPWNEWERDHVFSLLGLV 285
            MTS  FMGPLGKG W+EWERDH+FSLLG+V
Sbjct:    1 MTSALFMGPLGKGSWHEWERDHIFSLLGMV 30
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig723.18480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KR45_9PHAE6.330e-1776.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP72_9PHAE5.870e-1183.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSR2_9PHAE8.670e-1183.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L8G1_9PHAE1.890e-1083.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW26_9PHAE2.200e-1083.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FIQ1_ECTSI2.370e-1083.33Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5JI13_9PHAE5.980e-1083.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH75_9PHAE8.330e-1080.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig723contigF-serratus_M_contig723:357396..357683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size288
Cds size264
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932212.0025074-UTR-F-serratus_M_contig723:357395..3574191622932212.0025074-UTR-F-serratus_M_contig723:357395..357419Fucus serratus maleUTRF-serratus_M_contig723 357396..357419 +
1690964200.857163-UTR-F-serratus_M_contig723:357395..3574191690964200.857163-UTR-F-serratus_M_contig723:357395..357419Fucus serratus maleUTRF-serratus_M_contig723 357396..357419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932212.0337687-CDS-F-serratus_M_contig723:357419..3576831622932212.0337687-CDS-F-serratus_M_contig723:357419..357683Fucus serratus maleCDSF-serratus_M_contig723 357420..357683 +
1690964200.8688512-CDS-F-serratus_M_contig723:357419..3576831690964200.8688512-CDS-F-serratus_M_contig723:357419..357683Fucus serratus maleCDSF-serratus_M_contig723 357420..357683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig723.18480.1prot_F-serratus_M_contig723.18480.1Fucus serratus malepolypeptideF-serratus_M_contig723 357420..357683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig723.18480.1

>prot_F-serratus_M_contig723.18480.1 ID=prot_F-serratus_M_contig723.18480.1|Name=mRNA_F-serratus_M_contig723.18480.1|organism=Fucus serratus male|type=polypeptide|length=88bp
MSHSTPEQPTFGEHDESDALPSDAIAAAELDDLRDRRVYAARLGCVLHIL
HIAVTAGMTSTFFMGPLGKGPWNEWERDHVFSLLGLV*
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mRNA from alignment at F-serratus_M_contig723:357396..357683+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig723.18480.1 ID=mRNA_F-serratus_M_contig723.18480.1|Name=mRNA_F-serratus_M_contig723.18480.1|organism=Fucus serratus male|type=mRNA|length=288bp|location=Sequence derived from alignment at F-serratus_M_contig723:357396..357683+ (Fucus serratus male)
GCACGGACCCACACCGAAATAGATATGTCTCACAGCACACCCGAGCAGCC
GACGTTCGGCGAACACGATGAGAGTGATGCTTTACCTAGTGACGCAATCG
CTGCTGCTGAGCTCGATGACCTCCGAGATAGAAGGGTCTATGCTGCTCGT
CTAGGGTGTGTCCTGCATATCCTCCACATCGCTGTTACTGCAGGGATGAC
CAGCACATTCTTCATGGGCCCACTCGGCAAGGGCCCGTGGAACGAGTGGG
AAAGAGATCACGTGTTCTCCCTTCTCGGCCTCGTATGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig723:357396..357683+

>mRNA_F-serratus_M_contig723.18480.1 ID=mRNA_F-serratus_M_contig723.18480.1|Name=mRNA_F-serratus_M_contig723.18480.1|organism=Fucus serratus male|type=CDS|length=528bp|location=Sequence derived from alignment at F-serratus_M_contig723:357396..357683+ (Fucus serratus male)
ATGTCTCACAGCACACCCGAGCAGCCGACGTTCGGCGAACACGATGAGAG
TGATGCTTTACCTAGTGACGCAATCGCTGCTGCTGAGCTCGATGACCTCC
GAGATAGAAGGGTCTATGCTGCTCGTCTAGGGTGTGTCCTGCATATCCTC
CACATCGCTGTTACTGCAGGGATGACCAGCACATTCTTCATGGGCCCACT
CGGCAAGGGCCCGTGGAACGAGTGGGAAAGAGATCACGTGTTCTCCCTTC
TCGGCCTCGTATGAATGTCTCACAGCACACCCGAGCAGCCGACGTTCGGC
GAACACGATGAGAGTGATGCTTTACCTAGTGACGCAATCGCTGCTGCTGA
GCTCGATGACCTCCGAGATAGAAGGGTCTATGCTGCTCGTCTAGGGTGTG
TCCTGCATATCCTCCACATCGCTGTTACTGCAGGGATGACCAGCACATTC
TTCATGGGCCCACTCGGCAAGGGCCCGTGGAACGAGTGGGAAAGAGATCA
CGTGTTCTCCCTTCTCGGCCTCGTATGA
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