mRNA_F-serratus_M_contig723.18478.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig723.18478.1
Unique NamemRNA_F-serratus_M_contig723.18478.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig723.18478.1 vs. uniprot
Match: A0A2R4QQ74_9PHAE (Ribosomal protein L14 n=3 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ74_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 5.350e-59
Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 1 
Query:    1 MIQSQTLLKVVDNSGAKLVRCIKVKNKSGKSYANVGDVVLVSVRSLRPRYGKRVRQKMNKSEVHHGVIVQTRKVYRTRGGLGCSFGCNSVALISSQKNHWG 303
            MIQSQTLLKVVDNSGAKLVRCIKVKNKSGKSYANVGDVVLVSVRSLRPRYG+RVRQKMNKSEVHHGVIVQTRKVYRTRGGLG SFGCNSVALISSQK   G
Sbjct:    1 MIQSQTLLKVVDNSGAKLVRCIKVKNKSGKSYANVGDVVLVSVRSLRPRYGRRVRQKMNKSEVHHGVIVQTRKVYRTRGGLGYSFGCNSVALISSQKKPLG 101
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BLAST of mRNA_F-serratus_M_contig723.18478.1 vs. uniprot
Match: A0A8F0FDN0_9PHAE (Ribosomal protein L14 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0FDN0_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 3.480e-48
Identity = 77/101 (76.24%), Postives = 93/101 (92.08%), Query Frame = 1 
Query:    1 MIQSQTLLKVVDNSGAKLVRCIKVKNKSGKSYANVGDVVLVSVRSLRPRYGKRVRQKMNKSEVHHGVIVQTRKVYRTRGGLGCSFGCNSVALISSQKNHWG 303
            MI++QTLLKV+DNSGAKLV+CIKVKNKSGKSYAN+GD+VLV+V+SLRPRYG+RVR KMNKSEVHHGVIVQTR+++RT+GG+G SFG NSVALI+  +   G
Sbjct:    1 MIRAQTLLKVIDNSGAKLVKCIKVKNKSGKSYANIGDIVLVAVQSLRPRYGRRVRLKMNKSEVHHGVIVQTRRLHRTKGGVGLSFGSNSVALITPAEKPLG 101
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BLAST of mRNA_F-serratus_M_contig723.18478.1 vs. uniprot
Match: A0A8F0K0W4_9PHAE (Ribosomal protein L14 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0K0W4_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 2.850e-47
Identity = 75/101 (74.26%), Postives = 92/101 (91.09%), Query Frame = 1 
Query:    1 MIQSQTLLKVVDNSGAKLVRCIKVKNKSGKSYANVGDVVLVSVRSLRPRYGKRVRQKMNKSEVHHGVIVQTRKVYRTRGGLGCSFGCNSVALISSQKNHWG 303
            MI++QTLLKVVDNSGAKLV+CIKVKNKSG++YAN+GD+VLV+V+SLRPRYG+RVR KMNKSEVHHGV+VQTR+++R +GG+G  FG NSVALI+SQ    G
Sbjct:    1 MIRTQTLLKVVDNSGAKLVKCIKVKNKSGQAYANIGDIVLVAVQSLRPRYGRRVRLKMNKSEVHHGVVVQTRRLFRNKGGVGLCFGSNSVALITSQSKPLG 101
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BLAST of mRNA_F-serratus_M_contig723.18478.1 vs. uniprot
Match: A0A0G2RLA8_TUROR (Ribosomal protein L14 n=3 Tax=Sargassaceae TaxID=3014 RepID=A0A0G2RLA8_TUROR)

HSP 1 Score: 156 bits (395), Expect = 5.740e-47
Identity = 77/101 (76.24%), Postives = 91/101 (90.10%), Query Frame = 1 
Query:    1 MIQSQTLLKVVDNSGAKLVRCIKVKNKSGKSYANVGDVVLVSVRSLRPRYGKRVRQKMNKSEVHHGVIVQTRKVYRTRGGLGCSFGCNSVALISSQKNHWG 303
            MIQ QTLLKVVDNSGAKLVRCIK+KNK GKS A+VGD++L+SV+SLRPRYG+RVR KMNKSEVH GV+VQTRK++R++ G+G SFGCNSVALISSQ+   G
Sbjct:    1 MIQVQTLLKVVDNSGAKLVRCIKIKNKRGKSSASVGDILLLSVKSLRPRYGRRVRLKMNKSEVHQGVVVQTRKLHRSKSGVGSSFGCNSVALISSQEKPLG 101
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BLAST of mRNA_F-serratus_M_contig723.18478.1 vs. uniprot
Match: A0A3G5FPM7_9PHAE (Ribosomal protein L14 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPM7_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 6.670e-46
Identity = 75/101 (74.26%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:    1 MIQSQTLLKVVDNSGAKLVRCIKVKNKSGKSYANVGDVVLVSVRSLRPRYGKRVRQKMNKSEVHHGVIVQTRKVYRTRGGLGCSFGCNSVALISSQKNHWG 303
            MI++QTLLKVVDNSGAKLV+CIKVK K GKSYAN+GD+VLVSV+SLRPRYG+RVR KMNKSEVHHGV+VQTR++YR +GG+G SF  N+VALI+ Q    G
Sbjct:    1 MIRTQTLLKVVDNSGAKLVKCIKVKKKGGKSYANIGDIVLVSVQSLRPRYGRRVRLKMNKSEVHHGVVVQTRRLYRNKGGVGQSFSSNAVALITPQLKPLG 101
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BLAST of mRNA_F-serratus_M_contig723.18478.1 vs. uniprot
Match: Q2TUG1_9PHAE (Ribosomal protein L14 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUG1_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.910e-45
Identity = 73/94 (77.66%), Postives = 87/94 (92.55%), Query Frame = 1 
Query:    1 MIQSQTLLKVVDNSGAKLVRCIKVKNKSGKSYANVGDVVLVSVRSLRPRYGKRVRQKMNKSEVHHGVIVQTRKVYRTRGGLGCSFGCNSVALIS 282
            MI++QTLLKVVDNSGAKLV+CIKVK KSGK++AN+GD+VLV+V+SLRPRYG+RVR KMNKSEVHHGVIVQTR++YR  GG+G SF CNSV LI+
Sbjct:    1 MIRAQTLLKVVDNSGAKLVKCIKVKKKSGKAHANIGDIVLVAVQSLRPRYGRRVRLKMNKSEVHHGVIVQTRRLYRNSGGVGLSFNCNSVVLIT 94
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BLAST of mRNA_F-serratus_M_contig723.18478.1 vs. uniprot
Match: F8UWL5_9PHAE (Ribosomal protein L14 n=19 Tax=Laminariaceae TaxID=33636 RepID=F8UWL5_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 3.140e-44
Identity = 74/101 (73.27%), Postives = 90/101 (89.11%), Query Frame = 1 
Query:    1 MIQSQTLLKVVDNSGAKLVRCIKVKNKSGKSYANVGDVVLVSVRSLRPRYGKRVRQKMNKSEVHHGVIVQTRKVYRTRGGLGCSFGCNSVALISSQKNHWG 303
            MI++Q+LLKVVDNSGAKLV+CIKVK KSGK++ANVGDVVLV+V+SLRPRYG+RVR KMNKSEVHHGVIVQTR+++R + G+G SF  NSVALI+ Q+   G
Sbjct:    1 MIRTQSLLKVVDNSGAKLVKCIKVKKKSGKAHANVGDVVLVAVQSLRPRYGRRVRLKMNKSEVHHGVIVQTRRLFRNKAGVGVSFASNSVALITPQQKPIG 101
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BLAST of mRNA_F-serratus_M_contig723.18478.1 vs. uniprot
Match: A0A8F0FC07_9PHAE (Ribosomal protein L14 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FC07_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 3.140e-44
Identity = 70/101 (69.31%), Postives = 88/101 (87.13%), Query Frame = 1 
Query:    1 MIQSQTLLKVVDNSGAKLVRCIKVKNKSGKSYANVGDVVLVSVRSLRPRYGKRVRQKMNKSEVHHGVIVQTRKVYRTRGGLGCSFGCNSVALISSQKNHWG 303
            MI++QTLLKVVDNSGAKLV+C+KVKNK G++YAN+GD++LVSV++LRPRYG+RVR KMNKSEVHH V+VQTR++YR +  +G SF  NSVALIS Q+   G
Sbjct:    1 MIRAQTLLKVVDNSGAKLVKCVKVKNKGGQAYANIGDIILVSVQTLRPRYGRRVRLKMNKSEVHHAVVVQTRRIYRNKANVGLSFNSNSVALISPQQKPLG 101
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BLAST of mRNA_F-serratus_M_contig723.18478.1 vs. uniprot
Match: V9PB11_UNDPI (Ribosomal protein L14 n=7 Tax=Laminariales TaxID=2886 RepID=V9PB11_UNDPI)

HSP 1 Score: 149 bits (375), Expect = 6.330e-44
Identity = 70/101 (69.31%), Postives = 90/101 (89.11%), Query Frame = 1 
Query:    1 MIQSQTLLKVVDNSGAKLVRCIKVKNKSGKSYANVGDVVLVSVRSLRPRYGKRVRQKMNKSEVHHGVIVQTRKVYRTRGGLGCSFGCNSVALISSQKNHWG 303
            MI++Q+LLKVVDNSGAKLV+CIKVKNK  K++AN+GD+VLV+V+SLRPRYG+RVR KMNKSEVHHGV+VQTR+++R + G+G SF  NS+ALI+SQ+   G
Sbjct:    1 MIRTQSLLKVVDNSGAKLVKCIKVKNKGNKAHANIGDIVLVAVQSLRPRYGRRVRLKMNKSEVHHGVVVQTRRLFRNKAGVGVSFASNSIALITSQQKPLG 101
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BLAST of mRNA_F-serratus_M_contig723.18478.1 vs. uniprot
Match: A0A089MYJ2_PETFA (Ribosomal protein L14 n=6 Tax=Ectocarpales TaxID=2877 RepID=A0A089MYJ2_PETFA)

HSP 1 Score: 148 bits (373), Expect = 1.280e-43
Identity = 72/101 (71.29%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:    1 MIQSQTLLKVVDNSGAKLVRCIKVKNKSGKSYANVGDVVLVSVRSLRPRYGKRVRQKMNKSEVHHGVIVQTRKVYRTRGGLGCSFGCNSVALISSQKNHWG 303
            MI++QTLLKVVDNSGAKLV+CIKVK K GK+YA++GD+VLV+V++LRPRYG+RVR KMNKSEVHHGVIVQTR+++  +GG+G SFG NSVALI+ Q    G
Sbjct:    1 MIRTQTLLKVVDNSGAKLVKCIKVKKKGGKAYASIGDIVLVAVQTLRPRYGRRVRLKMNKSEVHHGVIVQTRRLFINKGGIGQSFGSNSVALITPQLKPLG 101
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig723.18478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QQ74_9PHAE5.350e-5995.05Ribosomal protein L14 n=3 Tax=Fucus TaxID=3011 Rep... [more]
A0A8F0FDN0_9PHAE3.480e-4876.24Ribosomal protein L14 n=1 Tax=Analipus japonicus T... [more]
A0A8F0K0W4_9PHAE2.850e-4774.26Ribosomal protein L14 n=2 Tax=Laminariales TaxID=2... [more]
A0A0G2RLA8_TUROR5.740e-4776.24Ribosomal protein L14 n=3 Tax=Sargassaceae TaxID=3... [more]
A0A3G5FPM7_9PHAE6.670e-4674.26Ribosomal protein L14 n=1 Tax=Cladosiphon okamuran... [more]
Q2TUG1_9PHAE1.910e-4577.66Ribosomal protein L14 n=2 Tax=Desmarestia TaxID=31... [more]
F8UWL5_9PHAE3.140e-4473.27Ribosomal protein L14 n=19 Tax=Laminariaceae TaxID... [more]
A0A8F0FC07_9PHAE3.140e-4469.31Ribosomal protein L14 n=1 Tax=Chorda asiatica TaxI... [more]
V9PB11_UNDPI6.330e-4469.31Ribosomal protein L14 n=7 Tax=Laminariales TaxID=2... [more]
A0A089MYJ2_PETFA1.280e-4371.29Ribosomal protein L14 n=6 Tax=Ectocarpales TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig723contigF-serratus_M_contig723:293953..294335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score79.3
Seed ortholog evalue1.3e-12
Seed eggNOG ortholog395493.BegalDRAFT_2614
Preferred namerplN
KEGG koko:K02874
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
EggNOG OGs1RCWZ@1224,1S3Z3@1236,460HS@72273,COG0093@1,COG0093@2
COG Functional cat.J
Best tax levelThiotrichales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size383
Cds size345
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932211.9215791-CDS-F-serratus_M_contig723:293952..2942971622932211.9215791-CDS-F-serratus_M_contig723:293952..294297Fucus serratus maleCDSF-serratus_M_contig723 293953..294297 +
1690964200.8288512-CDS-F-serratus_M_contig723:293952..2942971690964200.8288512-CDS-F-serratus_M_contig723:293952..294297Fucus serratus maleCDSF-serratus_M_contig723 293953..294297 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932211.9404306-UTR-F-serratus_M_contig723:294297..2943351622932211.9404306-UTR-F-serratus_M_contig723:294297..294335Fucus serratus maleUTRF-serratus_M_contig723 294298..294335 +
1690964200.8448837-UTR-F-serratus_M_contig723:294297..2943351690964200.8448837-UTR-F-serratus_M_contig723:294297..294335Fucus serratus maleUTRF-serratus_M_contig723 294298..294335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig723.18478.1prot_F-serratus_M_contig723.18478.1Fucus serratus malepolypeptideF-serratus_M_contig723 293953..294297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig723.18478.1

>prot_F-serratus_M_contig723.18478.1 ID=prot_F-serratus_M_contig723.18478.1|Name=mRNA_F-serratus_M_contig723.18478.1|organism=Fucus serratus male|type=polypeptide|length=115bp
MIQSQTLLKVVDNSGAKLVRCIKVKNKSGKSYANVGDVVLVSVRSLRPRY
GKRVRQKMNKSEVHHGVIVQTRKVYRTRGGLGCSFGCNSVALISSQKNHW
GLVYQLLYLQDFVV*
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mRNA from alignment at F-serratus_M_contig723:293953..294335+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig723.18478.1 ID=mRNA_F-serratus_M_contig723.18478.1|Name=mRNA_F-serratus_M_contig723.18478.1|organism=Fucus serratus male|type=mRNA|length=383bp|location=Sequence derived from alignment at F-serratus_M_contig723:293953..294335+ (Fucus serratus male)
ATGATTCAATCCCAAACCTTACTTAAAGTTGTTGATAACTCCGGAGCGAA
ACTTGTCAGATGTATTAAAGTAAAAAATAAAAGCGGTAAAAGTTACGCCA
ACGTGGGGGATGTCGTTTTAGTTTCTGTTCGATCTCTTCGCCCACGTTAC
GGTAAAAGAGTTCGCCAAAAAATGAATAAATCAGAAGTGCATCACGGGGT
TATTGTGCAAACCCGGAAGGTTTATCGTACTAGAGGTGGGTTAGGTTGCA
GTTTTGGTTGTAATTCTGTAGCCCTTATAAGCTCTCAAAAAAACCACTGG
GGACTCGTATATCAGCTACTTTACCTTCAAGACTTCGTGGTTTAAAGTGG
GGTAAATTAGCAGCGATGGCTAAAAAAATTATA
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Coding sequence (CDS) from alignment at F-serratus_M_contig723:293953..294335+

>mRNA_F-serratus_M_contig723.18478.1 ID=mRNA_F-serratus_M_contig723.18478.1|Name=mRNA_F-serratus_M_contig723.18478.1|organism=Fucus serratus male|type=CDS|length=690bp|location=Sequence derived from alignment at F-serratus_M_contig723:293953..294335+ (Fucus serratus male)
ATGATTCAATCCCAAACCTTACTTAAAGTTGTTGATAACTCCGGAGCGAA
ACTTGTCAGATGTATTAAAGTAAAAAATAAAAGCGGTAAAAGTTACGCCA
ACGTGGGGGATGTCGTTTTAGTTTCTGTTCGATCTCTTCGCCCACGTTAC
GGTAAAAGAGTTCGCCAAAAAATGAATAAATCAGAAGTGCATCACGGGGT
TATTGTGCAAACCCGGAAGGTTTATCGTACTAGAGGTGGGTTAGGTTGCA
GTTTTGGTTGTAATTCTGTAGCCCTTATAAGCTCTCAAAAAAACCACTGG
GGACTCGTATATCAGCTACTTTACCTTCAAGACTTCGTGGTTTAAATGAT
TCAATCCCAAACCTTACTTAAAGTTGTTGATAACTCCGGAGCGAAACTTG
TCAGATGTATTAAAGTAAAAAATAAAAGCGGTAAAAGTTACGCCAACGTG
GGGGATGTCGTTTTAGTTTCTGTTCGATCTCTTCGCCCACGTTACGGTAA
AAGAGTTCGCCAAAAAATGAATAAATCAGAAGTGCATCACGGGGTTATTG
TGCAAACCCGGAAGGTTTATCGTACTAGAGGTGGGTTAGGTTGCAGTTTT
GGTTGTAATTCTGTAGCCCTTATAAGCTCTCAAAAAAACCACTGGGGACT
CGTATATCAGCTACTTTACCTTCAAGACTTCGTGGTTTAA
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