mRNA_F-serratus_M_contig722.18469.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig722.18469.1
Unique NamemRNA_F-serratus_M_contig722.18469.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig722.18469.1 vs. uniprot
Match: A0A6H5JRP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRP2_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 2.690e-78
Identity = 117/129 (90.70%), Postives = 125/129 (96.90%), Query Frame = 1
Query:   28 ETLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLTSIVESKAERARFGRFYYRFPLGESGLDVYNRATSFIATMFRDFANQNIAREDLNVIIVTHGLTLRLLVMRWFQYSIADFEQTINPANGAFVVM 414
            +TLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNL +IV SKAERARFGRFYYRFP GESGLDVYNRATSFIATMFRDFAN++IAR+DLNVIIVTHGLTLRLLVMRWFQYSIADFE+T+NP NG+FVVM
Sbjct:  106 QTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVNSKAERARFGRFYYRFPQGESGLDVYNRATSFIATMFRDFANESIARDDLNVIIVTHGLTLRLLVMRWFQYSIADFEETLNPENGSFVVM 234          
BLAST of mRNA_F-serratus_M_contig722.18469.1 vs. uniprot
Match: D7FZ54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ54_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 5.950e-78
Identity = 117/129 (90.70%), Postives = 125/129 (96.90%), Query Frame = 1
Query:   28 ETLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLTSIVESKAERARFGRFYYRFPLGESGLDVYNRATSFIATMFRDFANQNIAREDLNVIIVTHGLTLRLLVMRWFQYSIADFEQTINPANGAFVVM 414
            +TLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNL +IV SKAERARFGRFYYRFP GESGLDVYNRATSFIATMFRDFAN++IAR+DLNVIIVTHGLTLRLLVMRWFQYSIADFE+T+NP NG+FVVM
Sbjct:  184 QTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVNSKAERARFGRFYYRFPQGESGLDVYNRATSFIATMFRDFANESIARDDLNVIIVTHGLTLRLLVMRWFQYSIADFEETLNPENGSFVVM 312          
BLAST of mRNA_F-serratus_M_contig722.18469.1 vs. uniprot
Match: A0A836CA23_9STRA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA23_9STRA)

HSP 1 Score: 231 bits (588), Expect = 8.490e-73
Identity = 111/129 (86.05%), Postives = 119/129 (92.25%), Query Frame = 1
Query:   28 ETLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLTSIVESKAERARFGRFYYRFPLGESGLDVYNRATSFIATMFRDFANQNIAREDLNVIIVTHGLTLRLLVMRWFQYSIADFEQTINPANGAFVVM 414
            +TLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNL +I +SK ERARFGRFYYRFP GESGLDVYNRATSFIATMFRDF+N+ IAR+DLNV+IVTHGLTLRL+VMRWFQYSIADFE T NP NG  VVM
Sbjct:  158 QTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIRDSKQERARFGRFYYRFPEGESGLDVYNRATSFIATMFRDFSNEQIARDDLNVVIVTHGLTLRLMVMRWFQYSIADFENTYNPPNGGHVVM 286          
BLAST of mRNA_F-serratus_M_contig722.18469.1 vs. uniprot
Match: A0A7S1XZK9_9STRA (Hypothetical protein n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZK9_9STRA)

HSP 1 Score: 201 bits (512), Expect = 9.480e-61
Identity = 96/125 (76.80%), Postives = 112/125 (89.60%), Query Frame = 1
Query:   40 GMVEAFDTNYIVGVREEPRLTEQQFGNFQNLTSIVESKAERARFGRFYYRFPLGESGLDVYNRATSFIATMFRDFANQNIAREDLNVIIVTHGLTLRLLVMRWFQYSIADFEQTINPANGAFVVM 414
            GMV A+DTN IVGVREEPRLTEQQFGNFQN+T++ ES+ +R RFGRFY+RFP GESGLDVYNR TSFIAT+FRDF+N++IAREDL+VIIVTHGLTLRL +MR+F Y+I DFE + NP NGAFVVM
Sbjct:  180 GMVGAWDTNEIVGVREEPRLTEQQFGNFQNVTNVKESREQRTRFGRFYFRFPEGESGLDVYNRVTSFIATLFRDFSNKDIAREDLDVIIVTHGLTLRLFLMRFFHYTIHDFENSYNPNNGAFVVM 304          
BLAST of mRNA_F-serratus_M_contig722.18469.1 vs. uniprot
Match: A0A7S3XT41_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT41_HETAK)

HSP 1 Score: 192 bits (487), Expect = 1.400e-59
Identity = 91/129 (70.54%), Postives = 107/129 (82.95%), Query Frame = 1
Query:   28 ETLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLTSIVESKAERARFGRFYYRFPLGESGLDVYNRATSFIATMFRDFANQNIAREDLNVIIVTHGLTLRLLVMRWFQYSIADFEQTINPANGAFVVM 414
            +TLAGM+ A +TN I+G REEPRLTEQQFGNFQN+ +  +SK ERARFGRFYYRFP GESGLDVYNR+TSFIATM RD AN  +AR  L+ +IVTHGLTLRL +MRWFQYS+ DFE++ NP NG  V+M
Sbjct:   16 QTLAGMMGALETNDIIGAREEPRLTEQQFGNFQNVLTTRQSKDERARFGRFYYRFPQGESGLDVYNRSTSFIATMHRDMANPALARPGLHSVIVTHGLTLRLFLMRWFQYSVEDFEESHNPPNGGVVIM 144          
BLAST of mRNA_F-serratus_M_contig722.18469.1 vs. uniprot
Match: A0A4D9D0Z6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0Z6_9STRA)

HSP 1 Score: 180 bits (457), Expect = 2.740e-52
Identity = 84/129 (65.12%), Postives = 105/129 (81.40%), Query Frame = 1
Query:   28 ETLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLTSIVESKAERARFGRFYYRFPLGESGLDVYNRATSFIATMFRDFANQNIAREDLNVIIVTHGLTLRLLVMRWFQYSIADFEQTINPANGAFVVM 414
            +TL+ ++E+F+ N  VGVREEPR+TEQQFGNFQ    + ++K ER  FGRFY+RFP GESGLDVY R TSFI+TMFRDFA+ +I R DLN++IVTHGLTLRLL+MRWF+ ++  FE T NP NG+FVVM
Sbjct:  241 QTLSNILESFEDNLKVGVREEPRITEQQFGNFQCQQLMQQAKKERCNFGRFYFRFPNGESGLDVYTRVTSFISTMFRDFADGHICRPDLNIVIVTHGLTLRLLLMRWFKLTVDTFESTTNPPNGSFVVM 369          
BLAST of mRNA_F-serratus_M_contig722.18469.1 vs. uniprot
Match: A0A7S2SR22_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR22_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.570e-51
Identity = 86/134 (64.18%), Postives = 102/134 (76.12%), Query Frame = 1
Query:   28 ETLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLTSIVESKAERARFGRFYYRFPLGESGLDVYNRATSFIATMFRDFANQNIARE-----DLNVIIVTHGLTLRLLVMRWFQYSIADFEQTINPANGAFVVM 414
            ETL  MV  F+ + IVGVREEPRLTEQQFGNFQNL  I   K ER+ +GRFYYRFP GESG DVY R ++F+  ++RD AN  +  E     DLNV+IV+HGLTLRLL+MRWFQY+I+DFEQ+ NP N AFVVM
Sbjct:  107 ETLQSMVTEFEQSDIVGVREEPRLTEQQFGNFQNLDEIQICKVERSSYGRFYYRFPQGESGFDVYTRVSTFLPDLYRDAANAELFGEGQTARDLNVVIVSHGLTLRLLLMRWFQYTISDFEQSHNPPNAAFVVM 240          
BLAST of mRNA_F-serratus_M_contig722.18469.1 vs. uniprot
Match: A0A7S0SR39_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SR39_9STRA)

HSP 1 Score: 166 bits (419), Expect = 5.150e-48
Identity = 78/132 (59.09%), Postives = 99/132 (75.00%), Query Frame = 1
Query:   28 ETLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLTSIVESKAERARFGRFYYRFPLGESGLDVYNRATSFIATMFRDFANQNIAR---EDLNVIIVTHGLTLRLLVMRWFQYSIADFEQTINPANGAFVVM 414
            +T A M++    N ++ VREEPRLTEQQFGNFQ    ++  K ER +FGRFYYRFP GESGLDVY+R +SFI T+FR++A +   R   ED N+IIVTHGLTLRL +MRWFQ+S+++FE T NP NG  +VM
Sbjct:  112 QTFALMIKELSNNNVITVREEPRLTEQQFGNFQKAEDMIRYKKERGQFGRFYYRFPDGESGLDVYSRVSSFIGTLFREWAKEQSTRSNHEDNNIIIVTHGLTLRLFLMRWFQFSVSEFENTRNPNNGDIIVM 243          
BLAST of mRNA_F-serratus_M_contig722.18469.1 vs. uniprot
Match: A0A6U6F2X5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6F2X5_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.930e-45
Identity = 72/132 (54.55%), Postives = 99/132 (75.00%), Query Frame = 1
Query:   28 ETLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLTSIVESKAERARFGRFYYRFPLGESGLDVYNRATSFIATMFRDFANQNIAREDL---NVIIVTHGLTLRLLVMRWFQYSIADFEQTINPANGAFVVM 414
            +TL G+++  D + ++G+REEPR++EQQFGN+Q   ++  +K ER  FGRFYYRFP GESG DVYNR +SFI+T+FRD         DL   NV IVTHGL+LRL++MRWFQY++ +FE++ NP NG+ VV+
Sbjct:   63 QTLRGILDEMDLDCVIGLREEPRISEQQFGNYQCFETVKVAKVERGDFGRFYYRFPNGESGFDVYNRVSSFISTIFRDVQQLRAEGHDLDRMNVCIVTHGLSLRLILMRWFQYTVHEFEESFNPDNGSVVVL 194          
BLAST of mRNA_F-serratus_M_contig722.18469.1 vs. uniprot
Match: A0A7R9VGE0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VGE0_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.020e-45
Identity = 69/132 (52.27%), Postives = 98/132 (74.24%), Query Frame = 1
Query:   28 ETLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLTSIVESKAERARFGRFYYRFPLGESGLDVYNRATSFIATMFRDFANQNIARED---LNVIIVTHGLTLRLLVMRWFQYSIADFEQTINPANGAFVVM 414
            +TL G+++  + + ++G+REEPR++EQQFGN+Q    +  +KAER  FGRFYYRFP GESG DVYNR +SFI+T+FRD         D   L++ +VTHGL LRL++MRWFQY++ +FE++ NP NG+ VV+
Sbjct:   11 QTLRGILDEMNLDCVIGLREEPRISEQQFGNYQCFEDVKMAKAERGDFGRFYYRFPNGESGFDVYNRVSSFISTIFRDIEQLRAEGHDTDRLHICVVTHGLALRLILMRWFQYTVHEFEESFNPDNGSVVVL 142          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig722.18469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRP2_9PHAE2.690e-7890.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ54_ECTSI5.950e-7890.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CA23_9STRA8.490e-7386.05NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A7S1XZK9_9STRA9.480e-6176.80Hypothetical protein n=4 Tax=Phaeomonas parva TaxI... [more]
A0A7S3XT41_HETAK1.400e-5970.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9D0Z6_9STRA2.740e-5265.12Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2SR22_9STRA1.570e-5164.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0SR39_9STRA5.150e-4859.09Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A6U6F2X5_9STRA1.930e-4554.55Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7R9VGE0_9STRA2.020e-4552.27Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig722contigF-serratus_M_contig722:69607..70435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score243.4
Seed ortholog evalue6.1e-62
Seed eggNOG ortholog2880.D7FZ54
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003993,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006793,GO:0006796,GO:0006810,GO:0006869,GO:0008150,GO:0008152,GO:0009987,GO:0010876,GO:0015850,GO:0015918,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0032365,GO:0032366,GO:0033036,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0071702
EggNOG free text desc.Histidine phosphatase superfamily (branch 1)
EggNOG OGs2CMFW@1,2QQ8J@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size414
Cds size414
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig722.18469.1prot_F-serratus_M_contig722.18469.1Fucus serratus malepolypeptideF-serratus_M_contig722 69607..70435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932209.9423769-CDS-F-serratus_M_contig722:69606..697941622932209.9423769-CDS-F-serratus_M_contig722:69606..69794Fucus serratus maleCDSF-serratus_M_contig722 69607..69794 +
1690964199.8808813-CDS-F-serratus_M_contig722:69606..697941690964199.8808813-CDS-F-serratus_M_contig722:69606..69794Fucus serratus maleCDSF-serratus_M_contig722 69607..69794 +
1622932209.9612453-CDS-F-serratus_M_contig722:69959..701041622932209.9612453-CDS-F-serratus_M_contig722:69959..70104Fucus serratus maleCDSF-serratus_M_contig722 69960..70104 +
1690964199.8937187-CDS-F-serratus_M_contig722:69959..701041690964199.8937187-CDS-F-serratus_M_contig722:69959..70104Fucus serratus maleCDSF-serratus_M_contig722 69960..70104 +
1622932209.9760644-CDS-F-serratus_M_contig722:70354..704351622932209.9760644-CDS-F-serratus_M_contig722:70354..70435Fucus serratus maleCDSF-serratus_M_contig722 70355..70435 +
1690964199.9043224-CDS-F-serratus_M_contig722:70354..704351690964199.9043224-CDS-F-serratus_M_contig722:70354..70435Fucus serratus maleCDSF-serratus_M_contig722 70355..70435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig722.18469.1

>prot_F-serratus_M_contig722.18469.1 ID=prot_F-serratus_M_contig722.18469.1|Name=mRNA_F-serratus_M_contig722.18469.1|organism=Fucus serratus male|type=polypeptide|length=138bp
MIVVCGCSLETLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLTSIVES
KAERARFGRFYYRFPLGESGLDVYNRATSFIATMFRDFANQNIAREDLNV
IIVTHGLTLRLLVMRWFQYSIADFEQTINPANGAFVVM
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mRNA from alignment at F-serratus_M_contig722:69607..70435+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig722.18469.1 ID=mRNA_F-serratus_M_contig722.18469.1|Name=mRNA_F-serratus_M_contig722.18469.1|organism=Fucus serratus male|type=mRNA|length=829bp|location=Sequence derived from alignment at F-serratus_M_contig722:69607..70435+ (Fucus serratus male)
ATGATTGTTGTCTGTGGCTGTTCCCTGGAGACTCTTGCTGGAATGGTCGA AGCGTTCGATACGAATTACATCGTAGGAGTCAGAGAGGAGCCACGCCTGA CGGAACAGCAGTTCGGAAACTTCCAGAACCTCACCAGCATCGTCGAATCT AAAGCGGAGCGAGCCCGATTCGGTCGGTTCTACTACAGGTAAGGCGGCAT TTTTCATATCCGAGCGCGCGCGCGAGTTTTGTCGCGTCTATTTCGCTTCC TACACGGTGGTTGGTTGCGACATCCACGCGTTGGGCGTAGTAGAGTTTGC GAATGTTGAGAAGCATGCCCCCCTCCCCGCCAACAAAAAAACGCCTGCGA CAGGTTTCCGCTTGGGGAGTCGGGCCTGGACGTGTACAACAGGGCAACGT CTTTCATTGCCACGATGTTCCGGGACTTCGCTAACCAAAATATCGCGCGA GAGGACCTCAACGTTATCATCGTGACTCATGGCCTAACCCTTCGTCTGGT GAGGGCAGTTTTGCCTTCAATGAAAGAGTGGAAATCTATGGAGGAGCTGG TTCTGTAAGATTGTAATAATTGGAGTTTCTTGCTACCCTCCCGCCCTGTG ACTAGAGGCTGATGATAGGCCACGACAAGCACGTATTTCCATTCAGCATA TTCAGTATATTAAACTACGCTTGACTTCAGGTTTCCCGCCGAACTCTTAT TCCTGTCGATTCGATGACCTTTGCGATTCGCCCTCCGCTATCGAGAAGCT CGTGATGCGCTGGTTCCAGTACTCCATAGCCGACTTCGAGCAGACCATCA ACCCGGCGAACGGCGCCTTTGTTGTGATG
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Coding sequence (CDS) from alignment at F-serratus_M_contig722:69607..70435+

>mRNA_F-serratus_M_contig722.18469.1 ID=mRNA_F-serratus_M_contig722.18469.1|Name=mRNA_F-serratus_M_contig722.18469.1|organism=Fucus serratus male|type=CDS|length=828bp|location=Sequence derived from alignment at F-serratus_M_contig722:69607..70435+ (Fucus serratus male)
ATGATTGTTGTCTGTGGCTGTTCCCTGGAGACTCTTGCTGGAATGGTCGA
AGCGTTCGATACGAATTACATCGTAGGAGTCAGAGAGGAGCCACGCCTGA
CGGAACAGCAGTTCGGAAACTTCCAGAACCTCACCAGCATCGTCGAATCT
AAAGCGGAGCGAGCCCGATTCGGTCGGTTCTACTACAGATGATTGTTGTC
TGTGGCTGTTCCCTGGAGACTCTTGCTGGAATGGTCGAAGCGTTCGATAC
GAATTACATCGTAGGAGTCAGAGAGGAGCCACGCCTGACGGAACAGCAGT
TCGGAAACTTCCAGAACCTCACCAGCATCGTCGAATCTAAAGCGGAGCGA
GCCCGATTCGGTCGGTTCTACTACAGGTTTCCGCTTGGGGAGTCGGGCCT
GGACGTGTACAACAGGGCAACGTCTTTCATTGCCACGATGTTCCGGGACT
TCGCTAACCAAAATATCGCGCGAGAGGACCTCAACGTTATCATCGTGACT
CATGGCCTAACCCTTCGTCTGGTTTCCGCTTGGGGAGTCGGGCCTGGACG
TGTACAACAGGGCAACGTCTTTCATTGCCACGATGTTCCGGGACTTCGCT
AACCAAAATATCGCGCGAGAGGACCTCAACGTTATCATCGTGACTCATGG
CCTAACCCTTCGTCTGCTCGTGATGCGCTGGTTCCAGTACTCCATAGCCG
ACTTCGAGCAGACCATCAACCCGGCGAACGGCGCCTTTGTTGTGATGCTC
GTGATGCGCTGGTTCCAGTACTCCATAGCCGACTTCGAGCAGACCATCAA
CCCGGCGAACGGCGCCTTTGTTGTGATG
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