mRNA_F-serratus_M_contig721.18463.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig721.18463.1
Unique NamemRNA_F-serratus_M_contig721.18463.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig721.18463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig721contigF-serratus_M_contig721:398570..401656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.5
Seed ortholog evalue7e-07
Seed eggNOG ortholog225117.XP_009375796.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CU6P@1,2RJJK@2759,37T0A@33090,3GFI7@35493
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons4
Model size821
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig721.18463.1prot_F-serratus_M_contig721.18463.1Fucus serratus malepolypeptideF-serratus_M_contig721 398921..401546 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932209.3047261-UTR-F-serratus_M_contig721:398569..3987121622932209.3047261-UTR-F-serratus_M_contig721:398569..398712Fucus serratus maleUTRF-serratus_M_contig721 398570..398712 -
1690964199.5790536-UTR-F-serratus_M_contig721:398569..3987121690964199.5790536-UTR-F-serratus_M_contig721:398569..398712Fucus serratus maleUTRF-serratus_M_contig721 398570..398712 -
1622932209.33059-UTR-F-serratus_M_contig721:398751..3989201622932209.33059-UTR-F-serratus_M_contig721:398751..398920Fucus serratus maleUTRF-serratus_M_contig721 398752..398920 -
1690964199.5991266-UTR-F-serratus_M_contig721:398751..3989201690964199.5991266-UTR-F-serratus_M_contig721:398751..398920Fucus serratus maleUTRF-serratus_M_contig721 398752..398920 -
1622932209.4241812-UTR-F-serratus_M_contig721:401546..4016561622932209.4241812-UTR-F-serratus_M_contig721:401546..401656Fucus serratus maleUTRF-serratus_M_contig721 401547..401656 -
1690964199.6558392-UTR-F-serratus_M_contig721:401546..4016561690964199.6558392-UTR-F-serratus_M_contig721:401546..401656Fucus serratus maleUTRF-serratus_M_contig721 401547..401656 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932209.3551195-CDS-F-serratus_M_contig721:398920..3989621622932209.3551195-CDS-F-serratus_M_contig721:398920..398962Fucus serratus maleCDSF-serratus_M_contig721 398921..398962 -
1690964199.6090953-CDS-F-serratus_M_contig721:398920..3989621690964199.6090953-CDS-F-serratus_M_contig721:398920..398962Fucus serratus maleCDSF-serratus_M_contig721 398921..398962 -
1622932209.3861263-CDS-F-serratus_M_contig721:400878..4009531622932209.3861263-CDS-F-serratus_M_contig721:400878..400953Fucus serratus maleCDSF-serratus_M_contig721 400879..400953 -
1690964199.617594-CDS-F-serratus_M_contig721:400878..4009531690964199.617594-CDS-F-serratus_M_contig721:400878..400953Fucus serratus maleCDSF-serratus_M_contig721 400879..400953 -
1622932209.403379-CDS-F-serratus_M_contig721:401264..4015461622932209.403379-CDS-F-serratus_M_contig721:401264..401546Fucus serratus maleCDSF-serratus_M_contig721 401265..401546 -
1690964199.6399543-CDS-F-serratus_M_contig721:401264..4015461690964199.6399543-CDS-F-serratus_M_contig721:401264..401546Fucus serratus maleCDSF-serratus_M_contig721 401265..401546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig721.18463.1

>prot_F-serratus_M_contig721.18463.1 ID=prot_F-serratus_M_contig721.18463.1|Name=mRNA_F-serratus_M_contig721.18463.1|organism=Fucus serratus male|type=polypeptide|length=133bp
MLDGKGHDSANAAFARMVFAHGLSFNIGTSKYLLDVMEEARKNPGWCPQG
RIALSTTALDREYDKVNKHTKIQINELASIYGKTWQTDGWTDKRGTPHTN
HIESADGVERFVVAHDCSGTPSGHSSRGIQTL*
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mRNA from alignment at F-serratus_M_contig721:398570..401656-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig721.18463.1 ID=mRNA_F-serratus_M_contig721.18463.1|Name=mRNA_F-serratus_M_contig721.18463.1|organism=Fucus serratus male|type=mRNA|length=3087bp|location=Sequence derived from alignment at F-serratus_M_contig721:398570..401656- (Fucus serratus male)
CGGACGCTGCTACGGCTCATTTCTCAGCTCTTGAGAAGAAGCGCGTGACC
ACCAAGAAGCGAAAGGTGGACAACGATGCGATCGACTCCAAACAACTCAG
CATTTGGAAGATGCTGGACGGCAAGGGTCATGACAGCGCTAATGCAGCGT
TCGCCCGGATGGTATTCGCACATGGATTATCGTTCAACATCGGCACTAGC
AAGTACCTCTTGGACGTAATGGAGGAAGCTCGAAAGAACCCCGGGTGGTG
CCCGCAGGGAAGGATTGCATTAAGCACCACAGCACTCGACCGCGAGTACG
ACAAGGTCAACAAGCACACCAAAATACAGATTAACGAGCTGGCGTCCATC
TACGGCAAGACCTGGCAGACTGACGGCTGGACGGACAAACGGGTGAGAGG
TGTATGTGAGGTCGGCTATACTGATTTTTGGTATTTGATATTTGGCATTT
GGCTATAATGTTTTATCATATTCATTAAATCTTAAATCATGCTTCGTTTA
TCGTGCTTCGAAGTATGCAGCAGCACTGCTGTATCGGGTTCATTGATATT
GTATATTGTATATTGTATATTGTATATTGTATGATGTACTAAGTATCATT
CGTGTATGATCGTGTGAAATAAGCAGAAGTATGATTTTTGCGTTTTCCAT
TGACCAGGTCGAACAACGAATGCATTTCGTTTTTTCATATTTTCGCACCT
CAGGGCACGCCGCACACAAACCACATCGAATCTGCAGACGGGGTCGAACG
GTTCGTCGTGGCGCACGACTGCTCAGGGCACAAAAAAGATATGGCTTTCC
TCGCGGACCAGATCAAGCCGTACATGGACCGCGACACGGATGATGGCGGA
CGGCGCGTGTGCAGGAATGCTGAAGATCCTCGAGCGCCTGTTCCCATGGT
AAGGCGATCAACCGATTCTCTCTTTTTCGTTCCTCTTTGATCTGTGCATT
GCTGTCTGGTTTGCGTTATATTTTTGCGTTGTGGTTTGTCTGTCTGCATA
GACACGTTGACTGCACCCTCTGCCGCTTTACGCTTTTAAGCTTTAAGCAT
GTACAGCAGTTCCTAATCTCGACGCGCGGTGCTTGTCTACCCCCCGCCGT
TGCTCTTGTGCAGGTTGACAGGCATGAAGTGTTGCGCACACGCAGTCGAC
CTCCTGATGAAGGACATCGCGAAGCAGCCGTGGGCTGCGGACATCATCAA
GCGCAACCTCGAAGTCATTAAGTTCGTCAAGAACCACCACTTCATCAGTG
CTCTCTTCCGCACGAAGACGGGCCTGTCACTCGTAACGCCCAATGCTACA
CGGTTTGCGACCAACCTCATCTCCGCCATGCGCACCTTGAAGGTGAGGGT
TGCTGATCTCTATCTTTCACACTTCTTGTTTCATTTTGTGTACTCGTGAG
GTTTTATGCACGAAATGTATTGCTCATTGGGATACCTGATAGATGTACGG
GTTTTTTGTTTTGTTTTTTATGTTCACCATACGAATACAAGCGCAAGCGT
ACACAAAATAAAATATTAAAGTACAAGTAAAGTTGAAATAATAACAGCAG
TATAATAACATACCAAGCATTAACCGTGACGCATCCATGGTGTATGTGCT
TCGTGTGCGTTGTCAAGGTGGCGCTCCCGCTGCAAAACTTTGCTAACGAC
CCGGCGCTGCAGGAGTACCTCAAGAATGCGTCGCCGTCTATTCGTGCAGC
GGGAAGGAAGGCGATCAGCGAGTTGAACGAGAAGAACGACGTCCAGGGGA
AGTTCTGGTTCGAGGTTCGCTTCTTCATGAAGATGATGGAGGTATGCTAC
ACCTTGCTCCGCATGGCGGATGGCACCAAGCCCTGCATGTCCAAGTTCTT
CAACGGCATGCTCAGCATGCCGGCCGCCTGGGACGCCGTGATAGCGGCGC
AGGTAGTGGAAACCAACGCCATCGAGGACGAGGGCTTCAACGACCTCGAG
GTGCGCGCGCGACTGGGTCCTATGAAGGAGAGACTCCAGGATCGCCGGGT
GTGCATGCACTCTCCCATGCTGGGGGCCGCGTTCGCCACCGATCCGGAGT
TCCGTAAAGTCGACTTGCTCTCGGTAGACGGCGGTGGGGTCTTGAACGAC
TTCAAGACCATGTGCACGCGCATCTTGATCGACTTCAAAGATGACGAAGA
CCCGGAGGTGACGATCGCCGAGTCGGAAAGCCTGCCAGATGGGGGGCCGG
TGGGGCGGGCCCTAGCTCAGTTACCTCGGTTCAAGAACAAGGACTGGGGT
GGTGCCGCCTTTCTGCCTTCAGCCAAGAGCATGTCGGTGGCCAGCTGGTG
GCAACAATACGGGCGCATGGATGGCTTCGATGAAATCGCCAAGGTGGCCG
TCCGGTGCAACTCCAAGATCCCCGCATCAGCTGGATCAGAGCGCAACTGG
AGCCTGTTCGGGGGTACGTGGTTTCACGTCTCACGCAGTATGCTTTGCTG
TCTGCTGTTTTCTTATCTTGTATTTGTTTCTTTTTCGTTTCTGTGTCTTG
CTTCTTTCCTGCCGACTCGCCACATGCTGTCTGTCTGCTGTCACAAATAC
ACAAAAACACATGAAACATTAACCAACACTGTCCTTTGCACGTTAATGCA
GACGTCATGGGAGGTCGGCGCGCTCGCTTGGGCGCTGATAAGGCAAAGAA
GCTGGTCTTCGTGCGGGCCAACTTGAAGCTGCTCGCCAACGACTACACCA
AGCGGCCATTCATCGCGTGGGATCCAGACTCTGTAGAATCAGACGGTTTC
CTCGGAAGCGGGGAGGGCGAGGACGACCCTGACTCGGAAGAGTCTGACTT
CGAATAGAGTGTAGTATTGTACCTTTGTTCTTCAGTTGTACTTGAGACTT
TAGTACCTTCATATACTTTTTGTTTTTGTTTTTGGTCCGTAATACTTCAG
CGTTTTAATTTGGGTTGAACACGCATGGCTCTCGGTTTCTGTTTGATGCT
TTGAACTTTGGACGCTGGCGGTGCAGTGTGGAGTGCGGAGGGTGGAGCAT
GGGACATCGTTTGTGTAAAAAAAACAAAACACGCTTGCATGGGTCGTGTG
CAAGCTTTTCGCACACCGTGGTCGAGACGCAGGTGTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig721:398570..401656-

>mRNA_F-serratus_M_contig721.18463.1 ID=mRNA_F-serratus_M_contig721.18463.1|Name=mRNA_F-serratus_M_contig721.18463.1|organism=Fucus serratus male|type=CDS|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig721:398570..401656- (Fucus serratus male)
ATGCTGGACGGCAAGGGTCATGACAGCGCTAATGCAGCGTTCGCCCGGAT
GGTATTCGCACATGGATTATCGTTCAACATCGGCACTAGCAAGTACCTCT
TGGACGTAATGGAGGAAGCTCGAAAGAACCCCGGGTGGTGCCCGCAGGGA
AGGATTGCATTAAGCACCACAGCACTCGACCGCGAGTACGACAAGGTCAA
CAAGCACACCAAAATACAGATTAACGAGCTGGCGTCCATCTACGGCAAGA
CCTGGCAGACTGACGGCTGGACGGACAAACGGATGCTGGACGGCAAGGGT
CATGACAGCGCTAATGCAGCGTTCGCCCGGATGGTATTCGCACATGGATT
ATCGTTCAACATCGGCACTAGCAAGTACCTCTTGGACGTAATGGAGGAAG
CTCGAAAGAACCCCGGGTGGTGCCCGCAGGGAAGGATTGCATTAAGCACC
ACAGCACTCGACCGCGAGTACGACAAGGTCAACAAGCACACCAAAATACA
GATTAACGAGCTGGCGTCCATCTACGGCAAGACCTGGCAGACTGACGGCT
GGACGGACAAACGGGGCACGCCGCACACAAACCACATCGAATCTGCAGAC
GGGGTCGAACGGTTCGTCGTGGCGCACGACTGCTCAGGGGGCACGCCGCA
CACAAACCACATCGAATCTGCAGACGGGGTCGAACGGTTCGTCGTGGCGC
ACGACTGCTCAGGGACACCAAGCGGCCATTCATCGCGTGGGATCCAGACT
CTGTAGACACCAAGCGGCCATTCATCGCGTGGGATCCAGACTCTGTAG
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