mRNA_F-serratus_M_contig721.18455.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig721.18455.1
Unique NamemRNA_F-serratus_M_contig721.18455.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig721.18455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig721contigF-serratus_M_contig721:86191..86770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size580
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932207.6038404-CDS-F-serratus_M_contig721:86190..864931622932207.6038404-CDS-F-serratus_M_contig721:86190..86493Fucus serratus maleCDSF-serratus_M_contig721 86191..86493 +
1690964198.7972786-CDS-F-serratus_M_contig721:86190..864931690964198.7972786-CDS-F-serratus_M_contig721:86190..86493Fucus serratus maleCDSF-serratus_M_contig721 86191..86493 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932207.6315506-UTR-F-serratus_M_contig721:86493..867701622932207.6315506-UTR-F-serratus_M_contig721:86493..86770Fucus serratus maleUTRF-serratus_M_contig721 86494..86770 +
1690964198.806644-UTR-F-serratus_M_contig721:86493..867701690964198.806644-UTR-F-serratus_M_contig721:86493..86770Fucus serratus maleUTRF-serratus_M_contig721 86494..86770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig721.18455.1prot_F-serratus_M_contig721.18455.1Fucus serratus malepolypeptideF-serratus_M_contig721 86191..86493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig721.18455.1

>prot_F-serratus_M_contig721.18455.1 ID=prot_F-serratus_M_contig721.18455.1|Name=mRNA_F-serratus_M_contig721.18455.1|organism=Fucus serratus male|type=polypeptide|length=101bp
CHELRQALRPFPQTFPNFPKLSPTFHESQTLETKNVRRVDRAFNVSNRTS
AAPTSFHMFHASPYSLFHLPPLSSFSFHLPNSSTWHKPWLYYFPLPLYTP
*
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mRNA from alignment at F-serratus_M_contig721:86191..86770+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig721.18455.1 ID=mRNA_F-serratus_M_contig721.18455.1|Name=mRNA_F-serratus_M_contig721.18455.1|organism=Fucus serratus male|type=mRNA|length=580bp|location=Sequence derived from alignment at F-serratus_M_contig721:86191..86770+ (Fucus serratus male)
TGCCACGAGTTAAGACAGGCCCTGAGACCTTTTCCTCAAACTTTCCCAAA
CTTTCCCAAACTTTCCCCAACGTTCCACGAATCTCAAACTTTGGAAACAA
AAAACGTACGTCGTGTAGATCGGGCCTTCAACGTCTCCAACAGAACATCA
GCTGCCCCGACCTCCTTTCACATGTTCCATGCCAGTCCATACTCCCTGTT
TCACCTCCCACCTCTATCTTCCTTCTCCTTTCATTTGCCAAATAGTTCGA
CGTGGCATAAACCCTGGCTGTACTATTTTCCCCTCCCACTATATACACCA
TAATACAAGTCTGTATCAACCTCACGGGTAGGCTAAGGGTGGTTGGGGAA
ACTACTTGAAGTTCTGGATCTTGGCAAGAACAAGAGGCAGTCGTACCTCC
GGAACTATCCCCATCCCCAACGAAGGATGCTCACTGCAGTTTCAGACCGG
TGATCTTCGGGTAGAGCAGAACAGGTGAAGAAGCAGTAACTAATACACAC
ACTGTCACCACATAGTCGGGTGCCTGCCCTCTTGCCTTGTCTTGCCGAGC
GAGGTGAAGGTGAAGGTGCCGGGAAAAGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig721:86191..86770+

>mRNA_F-serratus_M_contig721.18455.1 ID=mRNA_F-serratus_M_contig721.18455.1|Name=mRNA_F-serratus_M_contig721.18455.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig721:86191..86770+ (Fucus serratus male)
TGCCACGAGTTAAGACAGGCCCTGAGACCTTTTCCTCAAACTTTCCCAAA
CTTTCCCAAACTTTCCCCAACGTTCCACGAATCTCAAACTTTGGAAACAA
AAAACGTACGTCGTGTAGATCGGGCCTTCAACGTCTCCAACAGAACATCA
GCTGCCCCGACCTCCTTTCACATGTTCCATGCCAGTCCATACTCCCTGTT
TCACCTCCCACCTCTATCTTCCTTCTCCTTTCATTTGCCAAATAGTTCGA
CGTGGCATAAACCCTGGCTGTACTATTTTCCCCTCCCACTATATACACCA
TAATGCCACGAGTTAAGACAGGCCCTGAGACCTTTTCCTCAAACTTTCCC
AAACTTTCCCAAACTTTCCCCAACGTTCCACGAATCTCAAACTTTGGAAA
CAAAAAACGTACGTCGTGTAGATCGGGCCTTCAACGTCTCCAACAGAACA
TCAGCTGCCCCGACCTCCTTTCACATGTTCCATGCCAGTCCATACTCCCT
GTTTCACCTCCCACCTCTATCTTCCTTCTCCTTTCATTTGCCAAATAGTT
CGACGTGGCATAAACCCTGGCTGTACTATTTTCCCCTCCCACTATATACA
CCATAA
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