mRNA_F-serratus_M_contig720.18453.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig720.18453.1
Unique NamemRNA_F-serratus_M_contig720.18453.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig720.18453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig720contigF-serratus_M_contig720:376704..378107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1278
Cds size1278
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932203.7793107-CDS-F-serratus_M_contig720:376703..3771831622932203.7793107-CDS-F-serratus_M_contig720:376703..377183Fucus serratus maleCDSF-serratus_M_contig720 376704..377183 +
1690964197.0160913-CDS-F-serratus_M_contig720:376703..3771831690964197.0160913-CDS-F-serratus_M_contig720:376703..377183Fucus serratus maleCDSF-serratus_M_contig720 376704..377183 +
1622932203.799762-CDS-F-serratus_M_contig720:377309..3781071622932203.799762-CDS-F-serratus_M_contig720:377309..378107Fucus serratus maleCDSF-serratus_M_contig720 377310..378107 +
1690964197.027958-CDS-F-serratus_M_contig720:377309..3781071690964197.027958-CDS-F-serratus_M_contig720:377309..378107Fucus serratus maleCDSF-serratus_M_contig720 377310..378107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig720.18453.1prot_F-serratus_M_contig720.18453.1Fucus serratus malepolypeptideF-serratus_M_contig720 376704..378107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig720.18453.1

>prot_F-serratus_M_contig720.18453.1 ID=prot_F-serratus_M_contig720.18453.1|Name=mRNA_F-serratus_M_contig720.18453.1|organism=Fucus serratus male|type=polypeptide|length=426bp
LFLHQPIAAVTWPVSLRKLTLGVDFNQPIAGIEWPGSLRQLTFGLGFNQP
IAAVTWPTSLQQLTFGASFDHPIAEATWPASLQQLTFGASFHQPIIAVTW
PASLRQLTFGDSFNQPISAGVWPTLLQKITFGVHFNQPIDLVMWPPSLRQ
LTFGFYFNQPPISEVAWPSSLQQITFGCCFNQSLKGVTWPASLRQLTFGE
YFNQPVAEVSWPACLQELTFGIFFNKPISQATLPTSLQKITFGFHFNQPI
AAVTWPFLLRQLALGKSFNQPIAGIQWPASLQQISLGHDFNQSIEAVEWP
VGLQKLFLGNFWESVGGVIRSASRGHLAFVGTFNQPIDNVVWPASLRLLE
FGSSFNQPIVSVVWPASLESLKFGTNFNQPIVGAVWPTTLRDLTFGSSFD
QPLESVTWPSSLERLCIPNPTQYSAP
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mRNA from alignment at F-serratus_M_contig720:376704..378107+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig720.18453.1 ID=mRNA_F-serratus_M_contig720.18453.1|Name=mRNA_F-serratus_M_contig720.18453.1|organism=Fucus serratus male|type=mRNA|length=1404bp|location=Sequence derived from alignment at F-serratus_M_contig720:376704..378107+ (Fucus serratus male)
CTCTTCTTACACCAGCCTATCGCGGCAGTGACGTGGCCGGTTTCACTTCG
GAAGCTCACGCTTGGCGTCGACTTCAACCAGCCGATCGCTGGGATCGAGT
GGCCGGGGTCACTTCGGCAACTCACGTTCGGGCTTGGCTTCAACCAGCCG
ATTGCAGCAGTTACCTGGCCTACATCGTTGCAGCAACTCACGTTCGGGGC
TAGCTTCGACCACCCGATCGCTGAAGCTACCTGGCCGGCATCGTTGCAAC
AACTCACTTTCGGGGCTAGCTTCCACCAGCCGATCATAGCAGTTACCTGG
CCAGCTTCTCTACGACAGCTTACGTTTGGAGACAGCTTCAACCAGCCGAT
TTCTGCAGGAGTCTGGCCGACGTTGCTACAGAAAATCACGTTCGGGGTTC
ACTTCAACCAGCCCATCGATTTGGTTATGTGGCCACCTTCACTCCGGCAG
CTCACGTTTGGATTCTACTTCAACCAGCCGGTTGCTGCAGTTATCTGGCC
GACAACGCTACAGCAGCTTACCTTTGAAGGAAGTTCGACCAGCCGATAGA
TTCGGTCATCTGGCCAGCATCGCTACAGGAACTTACGTTCGGGATTTTTT
AACCAGCCCATTTCTGAAGTTGCCTGGCCATCGTCGCTGCAGCAAATCAC
GTTCGGGTGTTGCTTCAACCAATCACTCAAAGGAGTTACCTGGCCAGCTT
CACTAAGGCAGCTCACGTTCGGCGAGTATTTCAATCAGCCGGTCGCTGAA
GTTTCCTGGCCGGCATGTCTGCAAGAGCTCACGTTCGGAATATTTTTCAA
CAAGCCGATAAGTCAAGCTACCTTGCCGACATCGCTGCAGAAAATCACGT
TCGGGTTTCACTTCAATCAGCCAATCGCGGCAGTTACCTGGCCATTTTTA
CTGCGGCAACTGGCGCTCGGCAAGTCGTTCAACCAACCAATAGCTGGGAT
CCAGTGGCCGGCATCGCTGCAGCAAATTTCTTTAGGTCATGACTTTAATC
AATCAATCGAGGCGGTCGAGTGGCCGGTTGGATTACAGAAGCTCTTCCTT
GGGAATTTCTGGGAGTCCGTTGGTGGGGTTATTCGGTCGGCCTCACGAGG
ACACCTTGCTTTCGTGGGGACTTTCAACCAGCCGATCGACAATGTTGTGT
GGCCGGCGTCGCTGCGGCTCCTGGAATTTGGATCGTCTTTCAATCAGCCG
ATCGTAAGTGTTGTATGGCCGGCGTCCCTGGAGAGCCTCAAGTTCGGAAC
CAATTTTAACCAGCCGATCGTGGGGGCTGTGTGGCCGACGACACTGCGCG
ACCTAACGTTTGGGTCATCGTTTGACCAGCCCCTTGAATCAGTAACGTGG
CCTTCATCGTTGGAACGACTTTGTATTCCAAATCCTACGCAGTATTCGGC
ACCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig720:376704..378107+

>mRNA_F-serratus_M_contig720.18453.1 ID=mRNA_F-serratus_M_contig720.18453.1|Name=mRNA_F-serratus_M_contig720.18453.1|organism=Fucus serratus male|type=CDS|length=2556bp|location=Sequence derived from alignment at F-serratus_M_contig720:376704..378107+ (Fucus serratus male)
CTCTTCTTACACCAGCCTATCGCGGCAGTGACGTGGCCGGTTTCACTTCG
GAAGCTCACGCTTGGCGTCGACTTCAACCAGCCGATCGCTGGGATCGAGT
GGCCGGGGTCACTTCGGCAACTCACGTTCGGGCTTGGCTTCAACCAGCCG
ATTGCAGCAGTTACCTGGCCTACATCGTTGCAGCAACTCACGTTCGGGGC
TAGCTTCGACCACCCGATCGCTGAAGCTACCTGGCCGGCATCGTTGCAAC
AACTCACTTTCGGGGCTAGCTTCCACCAGCCGATCATAGCAGTTACCTGG
CCAGCTTCTCTACGACAGCTTACGTTTGGAGACAGCTTCAACCAGCCGAT
TTCTGCAGGAGTCTGGCCGACGTTGCTACAGAAAATCACGTTCGGGGTTC
ACTTCAACCAGCCCATCGATTTGGTTATGTGGCCACCTTCACTCCGGCAG
CTCACGTTTGGATTCTACTTCAACCAGCCGCTCTTCTTACACCAGCCTAT
CGCGGCAGTGACGTGGCCGGTTTCACTTCGGAAGCTCACGCTTGGCGTCG
ACTTCAACCAGCCGATCGCTGGGATCGAGTGGCCGGGGTCACTTCGGCAA
CTCACGTTCGGGCTTGGCTTCAACCAGCCGATTGCAGCAGTTACCTGGCC
TACATCGTTGCAGCAACTCACGTTCGGGGCTAGCTTCGACCACCCGATCG
CTGAAGCTACCTGGCCGGCATCGTTGCAACAACTCACTTTCGGGGCTAGC
TTCCACCAGCCGATCATAGCAGTTACCTGGCCAGCTTCTCTACGACAGCT
TACGTTTGGAGACAGCTTCAACCAGCCGATTTCTGCAGGAGTCTGGCCGA
CGTTGCTACAGAAAATCACGTTCGGGGTTCACTTCAACCAGCCCATCGAT
TTGGTTATGTGGCCACCTTCACTCCGGCAGCTCACGTTTGGATTCTACTT
CAACCAGCCGCCCATTTCTGAAGTTGCCTGGCCATCGTCGCTGCAGCAAA
TCACGTTCGGGTGTTGCTTCAACCAATCACTCAAAGGAGTTACCTGGCCA
GCTTCACTAAGGCAGCTCACGTTCGGCGAGTATTTCAATCAGCCGGTCGC
TGAAGTTTCCTGGCCGGCATGTCTGCAAGAGCTCACGTTCGGAATATTTT
TCAACAAGCCGATAAGTCAAGCTACCTTGCCGACATCGCTGCAGAAAATC
ACGTTCGGGTTTCACTTCAATCAGCCAATCGCGGCAGTTACCTGGCCATT
TTTACTGCGGCAACTGGCGCTCGGCAAGTCGTTCAACCAACCAATAGCTG
GGATCCAGTGGCCGGCATCGCTGCAGCAAATTTCTTTAGGTCATGACTTT
AATCAATCAATCGAGGCGGTCGAGTGGCCGGTTGGATTACAGAAGCTCTT
CCTTGGGAATTTCTGGGAGTCCGTTGGTGGGGTTATTCGGTCGGCCTCAC
GAGGACACCTTGCTTTCGTGGGGACTTTCAACCAGCCGATCGACAATGTT
GTGTGGCCGGCGTCGCTGCGGCTCCTGGAATTTGGATCGTCTTTCAATCA
GCCGATCGTAAGTGTTGTATGGCCGGCGTCCCTGGAGAGCCTCAAGTTCG
GAACCAATTTTAACCAGCCGATCGTGGGGGCTGTGTGGCCGACGACACTG
CGCGACCTAACGTTTGGGTCATCGTTTGACCAGCCCCTTGAATCAGTAAC
GTGGCCTTCATCGTTGGAACGACTTTGTATTCCAAATCCTACGCAGTATT
CGGCACCGCCCATTTCTGAAGTTGCCTGGCCATCGTCGCTGCAGCAAATC
ACGTTCGGGTGTTGCTTCAACCAATCACTCAAAGGAGTTACCTGGCCAGC
TTCACTAAGGCAGCTCACGTTCGGCGAGTATTTCAATCAGCCGGTCGCTG
AAGTTTCCTGGCCGGCATGTCTGCAAGAGCTCACGTTCGGAATATTTTTC
AACAAGCCGATAAGTCAAGCTACCTTGCCGACATCGCTGCAGAAAATCAC
GTTCGGGTTTCACTTCAATCAGCCAATCGCGGCAGTTACCTGGCCATTTT
TACTGCGGCAACTGGCGCTCGGCAAGTCGTTCAACCAACCAATAGCTGGG
ATCCAGTGGCCGGCATCGCTGCAGCAAATTTCTTTAGGTCATGACTTTAA
TCAATCAATCGAGGCGGTCGAGTGGCCGGTTGGATTACAGAAGCTCTTCC
TTGGGAATTTCTGGGAGTCCGTTGGTGGGGTTATTCGGTCGGCCTCACGA
GGACACCTTGCTTTCGTGGGGACTTTCAACCAGCCGATCGACAATGTTGT
GTGGCCGGCGTCGCTGCGGCTCCTGGAATTTGGATCGTCTTTCAATCAGC
CGATCGTAAGTGTTGTATGGCCGGCGTCCCTGGAGAGCCTCAAGTTCGGA
ACCAATTTTAACCAGCCGATCGTGGGGGCTGTGTGGCCGACGACACTGCG
CGACCTAACGTTTGGGTCATCGTTTGACCAGCCCCTTGAATCAGTAACGT
GGCCTTCATCGTTGGAACGACTTTGTATTCCAAATCCTACGCAGTATTCG
GCACCG
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