mRNA_F-serratus_M_contig720.18450.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig720.18450.1
Unique NamemRNA_F-serratus_M_contig720.18450.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig720.18450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig720contigF-serratus_M_contig720:336350..337462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size365
Cds size363
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig720.18450.1prot_F-serratus_M_contig720.18450.1Fucus serratus malepolypeptideF-serratus_M_contig720 336350..337462 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932203.6166346-CDS-F-serratus_M_contig720:336349..3364291622932203.6166346-CDS-F-serratus_M_contig720:336349..336429Fucus serratus maleCDSF-serratus_M_contig720 336350..336429 -
1690964196.960687-CDS-F-serratus_M_contig720:336349..3364291690964196.960687-CDS-F-serratus_M_contig720:336349..336429Fucus serratus maleCDSF-serratus_M_contig720 336350..336429 -
1622932203.6339407-CDS-F-serratus_M_contig720:336877..3370791622932203.6339407-CDS-F-serratus_M_contig720:336877..337079Fucus serratus maleCDSF-serratus_M_contig720 336878..337079 -
1690964196.9736342-CDS-F-serratus_M_contig720:336877..3370791690964196.9736342-CDS-F-serratus_M_contig720:336877..337079Fucus serratus maleCDSF-serratus_M_contig720 336878..337079 -
1622932203.6500578-CDS-F-serratus_M_contig720:337381..3374621622932203.6500578-CDS-F-serratus_M_contig720:337381..337462Fucus serratus maleCDSF-serratus_M_contig720 337382..337462 -
1690964196.9835148-CDS-F-serratus_M_contig720:337381..3374621690964196.9835148-CDS-F-serratus_M_contig720:337381..337462Fucus serratus maleCDSF-serratus_M_contig720 337382..337462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig720.18450.1

>prot_F-serratus_M_contig720.18450.1 ID=prot_F-serratus_M_contig720.18450.1|Name=mRNA_F-serratus_M_contig720.18450.1|organism=Fucus serratus male|type=polypeptide|length=121bp
LKPNYAEVLLRKARLLSRLGLWEESLKGYSSYLDVERIYQRWKEASAEAD
EVHAKFREERRRQQERRREEERRREKERRRKEADARSRSRRHDDWASRSG
GRAGGALHHPRPGAVRYHGTS
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mRNA from alignment at F-serratus_M_contig720:336350..337462-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig720.18450.1 ID=mRNA_F-serratus_M_contig720.18450.1|Name=mRNA_F-serratus_M_contig720.18450.1|organism=Fucus serratus male|type=mRNA|length=1113bp|location=Sequence derived from alignment at F-serratus_M_contig720:336350..337462- (Fucus serratus male)
CTCAAGCCCAACTATGCTGAGGTGCTCCTGAGGAAGGCCCGCCTTCTCTC
GCGACTTGGCCTTTGGGAGGAATCCTTGAAGGTGACTGCAGCACTTCAAC
GATCGCAACTCAATTATGGAGACAACTTTTCCATTTTCCACTGTGTGTGT
GTATTGTTCCATACTGCTGTTATAATACTTGCGATACTTTACCATCATTT
ACCCAGAGCACGAACTATTTTTGTGTCGCATAAATCCTGACAAGTCACCG
GAAAATAAAGGAAACCGCTCTTACGAACATAACACTGATACTTGTGAACA
AACTAACTAACTAATAAACACACATTTGACGCCTTGTCCCTTGTATTGGG
GTATTATTATACTTTCCCTCACCTCAACCTTAGGGATACAGCTCGTACCT
CGACGTCGAACGCATATATCAGCGGTGGAAGGAGGCCAGCGCCGAGGCGG
ACGAGGTTCACGCCAAATTTCGTGAGGAGCGCCGGCGGCAGCAAGAACGC
CGGCGCGAGGAAGAACGTCGGCGGGAGAAGGAGCGCCGACGGAAGGAGGC
AGACGCGAGATCGCGCTCCCGCCGGCACGACGACTGTGAGTGCCGTTAAT
GTTAATATCAATGCTAATATAGACAAAAAGAGAGACACGAGGGAAGGGCA
GAGAGAGGACAGGAGACTTGATCGACAGGAAAGAGAGAAACAAATGCACT
ACACGAAGGAAGGGCAGGTAGTCAGTCACTTTGGCTTAAACTGTGCCCGG
CCGCTTTTGTTCTTTCTCGTTGAGGGGATAAAGGGGGCGGGGCAGGGGTG
GGTCCAAGTAGAATTAAAGCATAATCCCAACCTGGTATGTGGTTCCAGGT
AGAATTAAAGCAAAAAACGTGCTCAATGACAACGATCGAATGGGACTCTA
TTTCCCTTGGAACTGTGAAAAGCTATCTAAGGAGCTACTATTATAGTGAA
CTGTAGTTCAAGTCTTGATCCTTTGCATCGCCTCCTCGACGCCTGCGTCA
CAAATGTACTGTGCGTGATAATGTACCTGGTAGGGGCTTCGAGGAGCGGC
GGGAGAGCCGGGGGGGCTCTACACCACCCTAGGCCTGGAGCCGTTCGCTA
CCACGGCACAAGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig720:336350..337462-

>mRNA_F-serratus_M_contig720.18450.1 ID=mRNA_F-serratus_M_contig720.18450.1|Name=mRNA_F-serratus_M_contig720.18450.1|organism=Fucus serratus male|type=CDS|length=726bp|location=Sequence derived from alignment at F-serratus_M_contig720:336350..337462- (Fucus serratus male)
CTCAAGCCCAACTATGCTGAGGTGCTCCTGAGGAAGGCCCGCCTTCTCTC
GCGACTTGGCCTTTGGGAGGAATCCTTGAAGCTCAAGCCCAACTATGCTG
AGGTGCTCCTGAGGAAGGCCCGCCTTCTCTCGCGACTTGGCCTTTGGGAG
GAATCCTTGAAGGGATACAGCTCGTACCTCGACGTCGAACGCATATATCA
GCGGTGGAAGGAGGCCAGCGCCGAGGCGGACGAGGTTCACGCCAAATTTC
GTGAGGAGCGCCGGCGGCAGCAAGAACGCCGGCGCGAGGAAGAACGTCGG
CGGGAGAAGGAGCGCCGACGGAAGGAGGCAGACGCGAGATCGCGCTCCCG
CCGGCACGACGACTGGATACAGCTCGTACCTCGACGTCGAACGCATATAT
CAGCGGTGGAAGGAGGCCAGCGCCGAGGCGGACGAGGTTCACGCCAAATT
TCGTGAGGAGCGCCGGCGGCAGCAAGAACGCCGGCGCGAGGAAGAACGTC
GGCGGGAGAAGGAGCGCCGACGGAAGGAGGCAGACGCGAGATCGCGCTCC
CGCCGGCACGACGACTGGGCTTCGAGGAGCGGCGGGAGAGCCGGGGGGGC
TCTACACCACCCTAGGCCTGGAGCCGTTCGCTACCACGGCACAAGTGGGC
TTCGAGGAGCGGCGGGAGAGCCGGGGGGGCTCTACACCACCCTAGGCCTG
GAGCCGTTCGCTACCACGGCACAAGT
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