mRNA_F-serratus_M_contig720.18435.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig720.18435.1
Unique NamemRNA_F-serratus_M_contig720.18435.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig720.18435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig720contigF-serratus_M_contig720:37907..38372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size467
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932203.8604858-CDS-F-serratus_M_contig720:37906..383711622932203.8604858-CDS-F-serratus_M_contig720:37906..38371Fucus serratus maleCDSF-serratus_M_contig720 37907..38371 +
1690964197.0394251-CDS-F-serratus_M_contig720:37906..383711690964197.0394251-CDS-F-serratus_M_contig720:37906..38371Fucus serratus maleCDSF-serratus_M_contig720 37907..38371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig720.18435.1prot_F-serratus_M_contig720.18435.1Fucus serratus malepolypeptideF-serratus_M_contig720 37907..38371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig720.18435.1

>prot_F-serratus_M_contig720.18435.1 ID=prot_F-serratus_M_contig720.18435.1|Name=mRNA_F-serratus_M_contig720.18435.1|organism=Fucus serratus male|type=polypeptide|length=155bp
QSGTPANCTPSFTPTRAFVFGPAPAPAAPAAAHSSVSTPKPPPSPGVPTG
GPAHKVAPAGPAGPLPLRSASGIFDGTFAPKPTVKREASGFHVGMCGQSK
AAQKRSSRTSTKECATIASKIDLSTGFAFVSPACVAPQGAQSSTAFVFGS
TDQRN
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mRNA from alignment at F-serratus_M_contig720:37907..38372+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig720.18435.1 ID=mRNA_F-serratus_M_contig720.18435.1|Name=mRNA_F-serratus_M_contig720.18435.1|organism=Fucus serratus male|type=mRNA|length=466bp|location=Sequence derived from alignment at F-serratus_M_contig720:37907..38372+ (Fucus serratus male)
CAATCAGGGACACCAGCGAATTGCACGCCAAGTTTTACCCCAACACGGGC
TTTTGTGTTCGGTCCGGCACCAGCGCCAGCCGCCCCCGCGGCGGCACATT
CATCCGTGTCGACGCCCAAGCCACCTCCTTCGCCAGGGGTTCCCACTGGG
GGACCTGCGCACAAGGTGGCACCGGCAGGACCGGCAGGTCCCCTGCCCCT
GCGGTCAGCATCGGGTATCTTTGATGGCACGTTCGCGCCCAAGCCAACGG
TTAAGCGCGAGGCGTCTGGATTCCACGTTGGGATGTGCGGTCAGAGCAAG
GCGGCTCAAAAGAGGAGCTCGAGGACAAGCACTAAAGAATGCGCGACGAT
CGCCAGCAAGATCGACTTGTCGACTGGATTCGCATTTGTATCCCCGGCGT
GTGTTGCCCCTCAAGGAGCCCAGTCTTCGACGGCATTTGTGTTTGGGTCG
ACGGATCAGCGAAACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig720:37907..38372+

>mRNA_F-serratus_M_contig720.18435.1 ID=mRNA_F-serratus_M_contig720.18435.1|Name=mRNA_F-serratus_M_contig720.18435.1|organism=Fucus serratus male|type=CDS|length=930bp|location=Sequence derived from alignment at F-serratus_M_contig720:37907..38372+ (Fucus serratus male)
CAATCAGGGACACCAGCGAATTGCACGCCAAGTTTTACCCCAACACGGGC
TTTTGTGTTCGGTCCGGCACCAGCGCCAGCCGCCCCCGCGGCGGCACATT
CATCCGTGTCGACGCCCAAGCCACCTCCTTCGCCAGGGGTTCCCACTGGG
GGACCTGCGCACAAGGTGGCACCGGCAGGACCGGCAGGTCCCCTGCCCCT
GCGGTCAGCATCGGGTATCTTTGATGGCACGTTCGCGCCCAAGCCAACGG
TTAAGCGCGAGGCGTCTGGATTCCACGTTGGGATGTGCGGTCAGAGCAAG
GCGGCTCAAAAGAGGAGCTCGAGGACAAGCACTAAAGAATGCGCGACGAT
CGCCAGCAAGATCGACTTGTCGACTGGATTCGCATTTGTATCCCCGGCGT
GTGTTGCCCCTCAAGGAGCCCAGTCTTCGACGGCATTTGTGTTTGGGTCG
ACGGATCAGCGAAACCAATCAGGGACACCAGCGAATTGCACGCCAAGTTT
TACCCCAACACGGGCTTTTGTGTTCGGTCCGGCACCAGCGCCAGCCGCCC
CCGCGGCGGCACATTCATCCGTGTCGACGCCCAAGCCACCTCCTTCGCCA
GGGGTTCCCACTGGGGGACCTGCGCACAAGGTGGCACCGGCAGGACCGGC
AGGTCCCCTGCCCCTGCGGTCAGCATCGGGTATCTTTGATGGCACGTTCG
CGCCCAAGCCAACGGTTAAGCGCGAGGCGTCTGGATTCCACGTTGGGATG
TGCGGTCAGAGCAAGGCGGCTCAAAAGAGGAGCTCGAGGACAAGCACTAA
AGAATGCGCGACGATCGCCAGCAAGATCGACTTGTCGACTGGATTCGCAT
TTGTATCCCCGGCGTGTGTTGCCCCTCAAGGAGCCCAGTCTTCGACGGCA
TTTGTGTTTGGGTCGACGGATCAGCGAAAC
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