mRNA_F-serratus_M_contig720.18434.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig720.18434.1
Unique NamemRNA_F-serratus_M_contig720.18434.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig720.18434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig720contigF-serratus_M_contig720:18513..20410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1343
Cds size816
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig720.18434.1prot_F-serratus_M_contig720.18434.1Fucus serratus malepolypeptideF-serratus_M_contig720 18796..20166 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932203.2456522-UTR-F-serratus_M_contig720:18512..187951622932203.2456522-UTR-F-serratus_M_contig720:18512..18795Fucus serratus maleUTRF-serratus_M_contig720 18513..18795 +
1690964196.8840141-UTR-F-serratus_M_contig720:18512..187951690964196.8840141-UTR-F-serratus_M_contig720:18512..18795Fucus serratus maleUTRF-serratus_M_contig720 18513..18795 +
1622932203.3263805-UTR-F-serratus_M_contig720:20166..204101622932203.3263805-UTR-F-serratus_M_contig720:20166..20410Fucus serratus maleUTRF-serratus_M_contig720 20167..20410 +
1690964196.930683-UTR-F-serratus_M_contig720:20166..204101690964196.930683-UTR-F-serratus_M_contig720:20166..20410Fucus serratus maleUTRF-serratus_M_contig720 20167..20410 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932203.2592282-CDS-F-serratus_M_contig720:18795..191181622932203.2592282-CDS-F-serratus_M_contig720:18795..19118Fucus serratus maleCDSF-serratus_M_contig720 18796..19118 +
1690964196.8944805-CDS-F-serratus_M_contig720:18795..191181690964196.8944805-CDS-F-serratus_M_contig720:18795..19118Fucus serratus maleCDSF-serratus_M_contig720 18796..19118 +
1622932203.27882-CDS-F-serratus_M_contig720:19634..200131622932203.27882-CDS-F-serratus_M_contig720:19634..20013Fucus serratus maleCDSF-serratus_M_contig720 19635..20013 +
1690964196.903993-CDS-F-serratus_M_contig720:19634..200131690964196.903993-CDS-F-serratus_M_contig720:19634..20013Fucus serratus maleCDSF-serratus_M_contig720 19635..20013 +
1622932203.3082194-CDS-F-serratus_M_contig720:20052..201661622932203.3082194-CDS-F-serratus_M_contig720:20052..20166Fucus serratus maleCDSF-serratus_M_contig720 20053..20166 +
1690964196.9147673-CDS-F-serratus_M_contig720:20052..201661690964196.9147673-CDS-F-serratus_M_contig720:20052..20166Fucus serratus maleCDSF-serratus_M_contig720 20053..20166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig720.18434.1

>prot_F-serratus_M_contig720.18434.1 ID=prot_F-serratus_M_contig720.18434.1|Name=mRNA_F-serratus_M_contig720.18434.1|organism=Fucus serratus male|type=polypeptide|length=272bp
MKTSVIVRRSSYGSGGSAAKYLPDPWEAEGRRQSEKQALPRSAKSPASSS
RARSPREEPSAGGGVKYYRGVNNDRPTSIHNHGVNKLVNYLRHGGGGFSE
NPMDFDSRYVVIERNVFYYAPLTTRISAICNLPAELFFGAAEVGSDCNFH
DIQRQICTRGAHGGVPNVRRGRSPESAKIHRPPPEEREMAGQWRSKPADA
GGDRSPRRTAKNKQRGGNFDGLAESRERSARRAASLWQELRVPHPDQACV
INAYLRGWGWDSWHLFGSRWG*
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mRNA from alignment at F-serratus_M_contig720:18513..20410+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig720.18434.1 ID=mRNA_F-serratus_M_contig720.18434.1|Name=mRNA_F-serratus_M_contig720.18434.1|organism=Fucus serratus male|type=mRNA|length=1898bp|location=Sequence derived from alignment at F-serratus_M_contig720:18513..20410+ (Fucus serratus male)
TGACGTACAGTACCACAAACAAGCGGTCGCTACGACTTCAGCAGTAACAA
CGTGACTTACCACTCTGTACTAAATCGAAGATCAAGACATATAATAGCGC
TCAGGACTCTAAACCCGCCGAATGTCGGGTGCACATCACCGCCTCCTCCA
CGCTGAGGACACAATAAAAGGGCTCCTGGATAGATAGCTTGGACATAAAA
ACAAAAGAACAAATCAAAGCCACAAGGGGGACGTTTGGTACCCAACGCCT
TGCGCTATCATCGGGGGAAGGGGGACGGGACCCATGAAGACGAGCGTAAT
CGTCCGCCGCAGCAGCTATGGCTCCGGTGGGTCGGCCGCAAAGTATCTCC
CCGACCCTTGGGAGGCTGAGGGGCGAAGGCAGTCCGAAAAGCAAGCTCTT
CCACGCAGCGCGAAGTCGCCAGCGTCCAGCAGTCGCGCAAGATCACCTCG
AGAGGAACCTTCGGCGGGAGGGGGCGTGAAATACTATCGTGGAGTTAACA
ATGACCGTCCTACAAGCATTCATAACCATGGAGTAAATAAGCTAGTAAAT
TACCTAAGGCACGGCGGCGGCGGCTTCTCCGAGAATCCAATGGACTTTGA
CTCGAGGCGAGAGTGATTCTTGGTTGGGTCGGGAGATCGGTCGGAGTTTG
TGGTAATCTAATTATTTAATACACTTGGGTGAACTTTCTTTCATGATGTG
CGCTAAAATTCACCGTTGACATTTTTGATAGCTAGAGTAGTTGGCCTTGA
CACGGTGGATAGGTTGGGGACGGTCCGTCCGGCGGCAGATCCACACTCTG
CTATGAGTGATGACCATTCCATAGTCTGAGCCGGAAATAATTTCACGCGC
CCCTTTAAGGCTCTCGTGCTCTTAAAGGTGGAGTGTAGATGGACAAACCT
ACGGGAGATTGTGTAATGTTTAGAAGCTTTTAGGTTCGTAGCCACATTCC
GAACACTGGCCTGGACGTGCAACACATTGCTGCCGACACGCATGTTGGGT
CCGCCGCTCGAAGTGATATTGACCCACAACGACCCATACGCTACCGCGTT
TGCAGTGTAAATAAGAAAAATACACTCTTCCTAATATATTTCGTCGTTTA
AACAAACGCAAAAAAATACCAGGTATGTCGTAATCGAGAGAAATGTCTTC
TATTATGCGCCGCTCACGACCAGAATCTCGGCGATCTGCAACCTCCCGGC
GGAGCTCTTTTTTGGAGCAGCGGAAGTCGGATCGGACTGCAATTTCCACG
ATATTCAACGGCAAATATGTACGCGGGGTGCGCATGGAGGGGTTCCGAAT
GTTAGGAGGGGACGTTCGCCAGAAAGCGCAAAGATCCACCGACCGCCTCC
AGAGGAGCGAGAAATGGCGGGACAATGGCGATCGAAGCCTGCGGACGCCG
GTGGTGACCGTAGCCCTCGTCGAACCGCCAAGAACAAGCAAAggGGGGGG
AATTTTGACGGGTTGGCAGAGTCGAGAGAACGGAGCGCGAGGCGTGCGGC
GGCGAAGGAAGTCATTGAACGACTGACGCTTCGACTGCAGAGTCTTTGGC
AAGAGCTCAGGGTGCCCCACCCCGACCAAGCGTGCGTAATTAACGCTTAC
CTCAGGGGGTGGGGTTGGGACTCTTGGCACTTGTTTGGGTCTCGATGGGG
ATAATGCGGGACCTACGATCAACGAAGTCCGGGATGAGCTAGTGAGACAG
ATCACACTGCTACTAAAGTACAGAACTGCCACGATTAAGGTGCCACAAAA
AACGCGTTGGCAGTAGATATGTACTCTTTTTGGTGATACGCTGGGCTCGC
GTGCTGCCATTTTCTCCACAAGGTGGGGTGTTTGTGGGACGCAACCACAC
GTTCCCATCAGTTCACCTAGCGTAATTTCTCAGCATGACTTGAATGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig720:18513..20410+

>mRNA_F-serratus_M_contig720.18434.1 ID=mRNA_F-serratus_M_contig720.18434.1|Name=mRNA_F-serratus_M_contig720.18434.1|organism=Fucus serratus male|type=CDS|length=1632bp|location=Sequence derived from alignment at F-serratus_M_contig720:18513..20410+ (Fucus serratus male)
ATGAAGACGAGCGTAATCGTCCGCCGCAGCAGCTATGGCTCCGGTGGGTC
GGCCGCAAAGTATCTCCCCGACCCTTGGGAGGCTGAGGGGCGAAGGCAGT
CCGAAAAGCAAGCTCTTCCACGCAGCGCGAAGTCGCCAGCGTCCAGCAGT
CGCGCAAGATCACCTCGAGAGGAACCTTCGGCGGGAGGGGGCGTGAAATA
CTATCGTGGAGTTAACAATGACCGTCCTACAAGCATTCATAACCATGGAG
TAAATAAGCTAGTAAATTACCTAAGGCACGGCGGCGGCGGCTTCTCCGAG
AATCCAATGGACTTTGACTCGAGATGAAGACGAGCGTAATCGTCCGCCGC
AGCAGCTATGGCTCCGGTGGGTCGGCCGCAAAGTATCTCCCCGACCCTTG
GGAGGCTGAGGGGCGAAGGCAGTCCGAAAAGCAAGCTCTTCCACGCAGCG
CGAAGTCGCCAGCGTCCAGCAGTCGCGCAAGATCACCTCGAGAGGAACCT
TCGGCGGGAGGGGGCGTGAAATACTATCGTGGAGTTAACAATGACCGTCC
TACAAGCATTCATAACCATGGAGTAAATAAGCTAGTAAATTACCTAAGGC
ACGGCGGCGGCGGCTTCTCCGAGAATCCAATGGACTTTGACTCGAGGTAT
GTCGTAATCGAGAGAAATGTCTTCTATTATGCGCCGCTCACGACCAGAAT
CTCGGCGATCTGCAACCTCCCGGCGGAGCTCTTTTTTGGAGCAGCGGAAG
TCGGATCGGACTGCAATTTCCACGATATTCAACGGCAAATATGTACGCGG
GGTGCGCATGGAGGGGTTCCGAATGTTAGGAGGGGACGTTCGCCAGAAAG
CGCAAAGATCCACCGACCGCCTCCAGAGGAGCGAGAAATGGCGGGACAAT
GGCGATCGAAGCCTGCGGACGCCGGTGGTGACCGTAGCCCTCGTCGAACC
GCCAAGAACAAGCAAAggGGGGGGAATTTTGACGGGTTGGCAGAGTCGAG
AGAACGGAGCGCGAGGCGTGCGGCGGTATGTCGTAATCGAGAGAAATGTC
TTCTATTATGCGCCGCTCACGACCAGAATCTCGGCGATCTGCAACCTCCC
GGCGGAGCTCTTTTTTGGAGCAGCGGAAGTCGGATCGGACTGCAATTTCC
ACGATATTCAACGGCAAATATGTACGCGGGGTGCGCATGGAGGGGTTCCG
AATGTTAGGAGGGGACGTTCGCCAGAAAGCGCAAAGATCCACCGACCGCC
TCCAGAGGAGCGAGAAATGGCGGGACAATGGCGATCGAAGCCTGCGGACG
CCGGTGGTGACCGTAGCCCTCGTCGAACCGCCAAGAACAAGCAAAggGGG
GGGAATTTTGACGGGTTGGCAGAGTCGAGAGAACGGAGCGCGAGGCGTGC
GGCGAGTCTTTGGCAAGAGCTCAGGGTGCCCCACCCCGACCAAGCGTGCG
TAATTAACGCTTACCTCAGGGGGTGGGGTTGGGACTCTTGGCACTTGTTT
GGGTCTCGATGGGGATAAAGTCTTTGGCAAGAGCTCAGGGTGCCCCACCC
CGACCAAGCGTGCGTAATTAACGCTTACCTCAGGGGGTGGGGTTGGGACT
CTTGGCACTTGTTTGGGTCTCGATGGGGATAA
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