mRNA_F-serratus_M_contig720.18432.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig720.18432.1
Unique NamemRNA_F-serratus_M_contig720.18432.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig720.18432.1 vs. uniprot
Match: D7FNH6_ECTSI (Major facilitator transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH6_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 7.820e-6
Identity = 27/56 (48.21%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:   79 AVNVPQQLIAAAVVRRRLTLCLFLSAITTSILSQVYPKIILLHFEGDDRKASTYRG 246
            A +VP+ L     VRRRL++CLFL  +  +I+SQVYPK++L HF+ D+ +AS + G
Sbjct:   36 ATSVPRGLTKGDRVRRRLSVCLFLHIVGVAIISQVYPKVVLEHFDHDNGEASRFTG 91
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BLAST of mRNA_F-serratus_M_contig720.18432.1 vs. uniprot
Match: A0A6H5L7V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V6_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.710e-5
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:  106 AAAVVRRRLTLCLFLSAITTSILSQVYPKIILLHFEGDDRKASTYRG 246
            AAA V R+LT C+ L  I  S+++QVYPKIILL   GDD +AS YRG
Sbjct:   28 AAAAVHRKLTACILLYTIGASMMTQVYPKIILLSSGGDDGEASKYRG 74
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig720.18432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNH6_ECTSI7.820e-648.21Major facilitator transporter n=2 Tax=Ectocarpus T... [more]
A0A6H5L7V6_9PHAE1.710e-559.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig720contigF-serratus_M_contig720:10630..11825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size416
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig720.18432.1prot_F-serratus_M_contig720.18432.1Fucus serratus malepolypeptideF-serratus_M_contig720 10678..11796 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932203.1380754-UTR-F-serratus_M_contig720:10629..106771622932203.1380754-UTR-F-serratus_M_contig720:10629..10677Fucus serratus maleUTRF-serratus_M_contig720 10630..10677 +
1690964196.8442523-UTR-F-serratus_M_contig720:10629..106771690964196.8442523-UTR-F-serratus_M_contig720:10629..10677Fucus serratus maleUTRF-serratus_M_contig720 10630..10677 +
1622932203.199376-UTR-F-serratus_M_contig720:11796..118251622932203.199376-UTR-F-serratus_M_contig720:11796..11825Fucus serratus maleUTRF-serratus_M_contig720 11797..11825 +
1690964196.8741376-UTR-F-serratus_M_contig720:11796..118251690964196.8741376-UTR-F-serratus_M_contig720:11796..11825Fucus serratus maleUTRF-serratus_M_contig720 11797..11825 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932203.1582859-CDS-F-serratus_M_contig720:10677..108211622932203.1582859-CDS-F-serratus_M_contig720:10677..10821Fucus serratus maleCDSF-serratus_M_contig720 10678..10821 +
1690964196.8549182-CDS-F-serratus_M_contig720:10677..108211690964196.8549182-CDS-F-serratus_M_contig720:10677..10821Fucus serratus maleCDSF-serratus_M_contig720 10678..10821 +
1622932203.1779804-CDS-F-serratus_M_contig720:11601..117961622932203.1779804-CDS-F-serratus_M_contig720:11601..11796Fucus serratus maleCDSF-serratus_M_contig720 11602..11796 +
1690964196.86446-CDS-F-serratus_M_contig720:11601..117961690964196.86446-CDS-F-serratus_M_contig720:11601..11796Fucus serratus maleCDSF-serratus_M_contig720 11602..11796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig720.18432.1

>prot_F-serratus_M_contig720.18432.1 ID=prot_F-serratus_M_contig720.18432.1|Name=mRNA_F-serratus_M_contig720.18432.1|organism=Fucus serratus male|type=polypeptide|length=113bp
MSEDEVETRLAVNVPQQLIAAAVVRRRLTLCLFLSAITTSILSQVYPKII
LLHFEGDDRKASTYRGVCRPKRASTFSYHMYSSRIDEAACRHGVPGDRIR
TRRTWTEWHSMR*
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mRNA from alignment at F-serratus_M_contig720:10630..11825+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig720.18432.1 ID=mRNA_F-serratus_M_contig720.18432.1|Name=mRNA_F-serratus_M_contig720.18432.1|organism=Fucus serratus male|type=mRNA|length=1196bp|location=Sequence derived from alignment at F-serratus_M_contig720:10630..11825+ (Fucus serratus male)
CACAGGGGCACGCCCCGACATCACCTCAGCCGATCGATTGCGAACCTGAT
GTCTGAGGATGAAGTGGAGACGCGATTGGCTGTGAATGTACCTCAACAGC
TCATAGCTGCAGCCGTCGTGCGCAGGCGGCTGACCCTTTGTCTCTTCCTC
TCTGCCATTACCACAAGTATCTTGTCTCAAGTCTACCCGAAGGTAAAAAA
AAAGAGACCCTGCGATCGATCGACTTCTCCCCGATATTATACTGTTGACC
CTATGTAGCTACATTGGGGAACCCTGTTAATACCATGTACCTGGTAGAGG
TTTTTGTCCTTACAGCCAATGTTCTCACCTGACACCTTTTGACTGATCAG
AAGGTTTAGATGCGTTCTGATTTTCTTTAAACAAGTATAACCGTAAGAAT
CGGAGTCTTGGCACACCCCTTAGATTGACTTTCCAGGCTCGATTGCTCCA
CAACCAAGAGCGTTAGGTGCCAATGCCGAAAAGCGCGATTTTCGAAAGAT
CTCGTCGAGGGCGTTCTTTAGACGTACCGGTCGGTGTTCGCATCCTCTTG
GTTGTGGAGAAATCGAGGCTGGAAAGTCAATCTATTGATAGGGGTGTGCC
AAGACTCCGATACTTACGGTTATAGTACTTTCGTAGAATTGATTTGTCTT
TGTTATAATGAGAGACCGGAGCCCAGAGAGCTACTCATCATATCTTGCTT
TGACACTCCACGATATGGACGAGGAAATTCACCAAGTACTACGTGTTGGA
CGCCCATGGTTACCCCGTACATCACCGTGTACATGCGTGAAACGAAACTC
AAGACGCTCGTAGCGGGCAGTACAACGAAATTCGCTCGTGCTTCGACAAG
TGTTCCTCACAGTACATTTACTACTGCTGCTGCATCAAGTCTATCACGCT
GGAATCCTCCCGTTAAAGCGCTGCGATGCTTACGTCCGTGGGCATTGACC
AACTTATCGGTTAAAATGGCAGATAATTCTCCTGCACTTCGAAGGAGATG
ATCGCAAAGCTTCCACCTACCGCGGGGTATGTAGACCGAAGCGAGCAAGC
ACCTTCTCCTATCATATGTACAGCAGCAGAATCGACGAAGCCGCATGTCG
CCACGGAGTACCTGGTGATAGAATACGCACGCGTCGAACCTGGACCGAAT
GGCATTCAATGCGTTAGCTGCTGGCGCACCGATTTCTCTTCGTCGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig720:10630..11825+

>mRNA_F-serratus_M_contig720.18432.1 ID=mRNA_F-serratus_M_contig720.18432.1|Name=mRNA_F-serratus_M_contig720.18432.1|organism=Fucus serratus male|type=CDS|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig720:10630..11825+ (Fucus serratus male)
ATGTCTGAGGATGAAGTGGAGACGCGATTGGCTGTGAATGTACCTCAACA
GCTCATAGCTGCAGCCGTCGTGCGCAGGCGGCTGACCCTTTGTCTCTTCC
TCTCTGCCATTACCACAAGTATCTTGTCTCAAGTCTACCCGAAGATGTCT
GAGGATGAAGTGGAGACGCGATTGGCTGTGAATGTACCTCAACAGCTCAT
AGCTGCAGCCGTCGTGCGCAGGCGGCTGACCCTTTGTCTCTTCCTCTCTG
CCATTACCACAAGTATCTTGTCTCAAGTCTACCCGAAGATAATTCTCCTG
CACTTCGAAGGAGATGATCGCAAAGCTTCCACCTACCGCGGGGTATGTAG
ACCGAAGCGAGCAAGCACCTTCTCCTATCATATGTACAGCAGCAGAATCG
ACGAAGCCGCATGTCGCCACGGAGTACCTGGTGATAGAATACGCACGCGT
CGAACCTGGACCGAATGGCATTCAATGCGTTAGATAATTCTCCTGCACTT
CGAAGGAGATGATCGCAAAGCTTCCACCTACCGCGGGGTATGTAGACCGA
AGCGAGCAAGCACCTTCTCCTATCATATGTACAGCAGCAGAATCGACGAA
GCCGCATGTCGCCACGGAGTACCTGGTGATAGAATACGCACGCGTCGAAC
CTGGACCGAATGGCATTCAATGCGTTAG
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