mRNA_F-serratus_M_contig72.18427.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig72.18427.1
Unique NamemRNA_F-serratus_M_contig72.18427.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig72.18427.1 vs. uniprot
Match: D7FUR1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR1_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 4.900e-10
Identity = 59/151 (39.07%), Postives = 70/151 (46.36%), Query Frame = 1 
Query:  664 PPXXPLPAPLFQSRANDLDPSNPFATIRMLLKVIEFLQLERAQ----------------CSDHHHQGGL---DDLLSTQTRHFD----------PADDSER------------------AGSKSREDIRRLRLENRNMHFLLVENRELKRQ 975
            PP  PLP P     AN LDPS+P+ATIR LLK++E LQLE A+                C D   + G     D  +T T H            P +   R                   G+  RE++RRLRLENRNMH LLVENRELK Q
Sbjct:  424 PPTLPLPPPPLPP-ANGLDPSDPYATIRKLLKLVEILQLELARDDNNTEDRRYQEGAFLCGDLRKRSGRYADGDTTTTTTDHAKGENAFFSDKRPGNPRTRDSTVICDGXXXXXXGFPYLGATGREELRRLRLENRNMHLLLVENRELKTQ 573
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig72.18427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUR1_ECTSI4.900e-1039.07Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig72contigF-serratus_M_contig72:871186..872955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue4.4e-10
Seed eggNOG ortholog2880.D7FUR1
Hectar predicted targeting categoryother localisation
EggNOG OGs2E022@1,2S7HV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size980
Cds size978
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932199.5844321-CDS-F-serratus_M_contig72:871187..8714191622932199.5844321-CDS-F-serratus_M_contig72:871187..871419Fucus serratus maleCDSF-serratus_M_contig72 871188..871419 -
1690964195.2739031-CDS-F-serratus_M_contig72:871187..8714191690964195.2739031-CDS-F-serratus_M_contig72:871187..871419Fucus serratus maleCDSF-serratus_M_contig72 871188..871419 -
1622932199.5983403-CDS-F-serratus_M_contig72:872209..8729551622932199.5983403-CDS-F-serratus_M_contig72:872209..872955Fucus serratus maleCDSF-serratus_M_contig72 872210..872955 -
1690964195.2848983-CDS-F-serratus_M_contig72:872209..8729551690964195.2848983-CDS-F-serratus_M_contig72:872209..872955Fucus serratus maleCDSF-serratus_M_contig72 872210..872955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig72.18427.1prot_F-serratus_M_contig72.18427.1Fucus serratus malepolypeptideF-serratus_M_contig72 871188..872955 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig72.18427.1

>prot_F-serratus_M_contig72.18427.1 ID=prot_F-serratus_M_contig72.18427.1|Name=mRNA_F-serratus_M_contig72.18427.1|organism=Fucus serratus male|type=polypeptide|length=326bp
AFTREVGEKKEGREKEQAVQRISSIEAISPREILTVSAPVVVPFAPNADV
EIFSRKLVDEVDGSGDARRRGQEDGFVVLASPGVGAPRVNEGSDAGDTKD
GGCASVAGETSQRAQRGIEWTDSSSCQGTTEADEPSCGFVSTKDDFPVTA
EAGSFSAAESGGKGENYGAPIPSGDKLAREAETSSADSAGGEDRERGEAE
LRHSGRREMDTLRVGRSSPQQPPPPPLPAPLFQSRANDLDPSNPFATIRM
LLKVIEFLQLERAQCSDHHHQGGLDDLLSTQTRHFDPADDSERAGSKSRE
DIRRLRLENRNMHFLLVENRELKRQA
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mRNA from alignment at F-serratus_M_contig72:871186..872955-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig72.18427.1 ID=mRNA_F-serratus_M_contig72.18427.1|Name=mRNA_F-serratus_M_contig72.18427.1|organism=Fucus serratus male|type=mRNA|length=1770bp|location=Sequence derived from alignment at F-serratus_M_contig72:871186..872955- (Fucus serratus male)
GCGTTCACGAGGGAGGTGGGAGAAAAGAAAGAGGGGAGGGAGAAGGAGCA
GGCGGTGCAAAGGATCTCGTCGATTGAGGCTATATCACCCAGGGAGATTC
TGACGGTATCGGCACCGGTGGTGGTCCCGTTTGCTCCAAACGCTGATGTA
GAAATTTTTTCGAGGAAACTCGTGGACGAGGTCGACGGATCCGGGGACGC
AAGAAGGCGAGGACAAGAGGATGGATTCGTCGTCCTTGCCTCTCCCGGAG
TTGGCGCACCAAGGGTCAACGAGGGGAGTGATGCGGGCGACACGAAGGAC
GGAGGCTGCGCGTCGGTCGCTGGTGAGACTTCGCAGAGAGCGCAGCGGGG
AATAGAATGGACAGACTCGTCATCGTGCCAGGGTACCACGGAAGCTGACG
AACCCAGCTGCGGTTTCGTCTCCACCAAGGACGACTTTCCCGTGACGGCC
GAAGCCGGAAGCTTCAGTGCGGCGGAGAGTGGCGGGAAAGGCGAGAATTA
TGGGGCGCCGATTCCATCCGGGGACAAACTCGCGCGCGAAGCCGAAACGT
CCTCGGCTGACTCAGCGGGTGGAGAGGACCGTGAACGAGGCGAAGCTGAG
CTACGTCATAGCGGGAGGCGGGAGATGGACACCTTGCGAGTTGGAAGGTC
GTCGCCGCAACAGCCACCACCGCCACCACTCCCTGCGCCGTTGTTTCAAT
CGCGGGCCAATGACCTGGATCCTTCGAATCCGTTCGCGACCATAAGGTGC
TTCCACACGGTTATTTCCCCCTTTAAGTGCGATTAACCTGCTTGCGCATT
GACGCGCGACCCACGAGGGTGCAACACGCCTTCGGCAATTTTTCGCTCTA
CCTTTTGATCCCCATTTATCAAGCTTTGGGCGTGCAACCCCCATTGCTGT
CGCGAAAAGATCAACGCGGCTGACGGCATAAGTTGGACGAAGTCATCTGC
TCTAGAATCCAGACAAGTCGGGCCGAGGTTGAAGTACGTGGCTAAGATAC
CGCCAACGAGGAACCACGTTGGCATGTTTTAGTAAGAGAGCTAGCCCCCT
GCAAGGCCTGTCTTTGAGACCCCCCGCCCCCCCCGTTCCGGCCAAGCACT
CTTTCTCCCTCCGGTATCCTACTCAGACTACCACCACCAGCCAGTCCCAG
TTAAAACACTTTCCACGATAACAAGCTTCCAAAAAAAGTTTTAACGAAAT
CCTCAGTTTCTAAACCGAGTAAGCGACACTTTGGCTTCTTTTCCCCCGCG
CCTTATCAATCCGATCGCTTGGATGCGCAGCTGAACACATCTAGACCTCC
ACTTGCTAAAACACAAAAAGCACGCCTGCTAAAAACAAATCTCGTCGGTT
TGGGGTCGTACTATAATTTACTTGATATACTATCATGCTATACTATGGAG
GAGCGTCAGTCGACTACGCTACTTGTCTAAAGTCATGACTGGTCAATTCC
GCTCGCACTCCATAGTTAAAACCAACACTTGAAGTGATCCTTGTCAATCT
CTCTTCGCCCCCCCCCTGTGTGCGCCCGTATTCCAGAATGCTTCTGAAGG
TTATCGAATTCCTACAACTTGAGCGCGCTCAATGCTCTGACCACCATCAT
CAAGGCGGGCTTGACGACCTCCTTTCGACGCAAACGCGACACTTTGACCC
AGCCGACGACTCCGAACGAGCGGGATCGAAATCTCGAGAAGACATCCGAC
GGTTACGGCTTGAAAACAGGAACATGCACTTTCTTCTTGTCGAAAACCGG
GAGCTGAAGAGGCAGGCGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig72:871186..872955-

>mRNA_F-serratus_M_contig72.18427.1 ID=mRNA_F-serratus_M_contig72.18427.1|Name=mRNA_F-serratus_M_contig72.18427.1|organism=Fucus serratus male|type=CDS|length=1956bp|location=Sequence derived from alignment at F-serratus_M_contig72:871186..872955- (Fucus serratus male)
GCGTTCACGAGGGAGGTGGGAGAAAAGAAAGAGGGGAGGGAGAAGGAGCA
GGCGGTGCAAAGGATCTCGTCGATTGAGGCTATATCACCCAGGGAGATTC
TGACGGTATCGGCACCGGTGGTGGTCCCGTTTGCTCCAAACGCTGATGTA
GAAATTTTTTCGAGGAAACTCGTGGACGAGGTCGACGGATCCGGGGACGC
AAGAAGGCGAGGACAAGAGGATGGATTCGTCGTCCTTGCCTCTCCCGGAG
TTGGCGCACCAAGGGTCAACGAGGGGAGTGATGCGGGCGACACGAAGGAC
GGAGGCTGCGCGTCGGTCGCTGGTGAGACTTCGCAGAGAGCGCAGCGGGG
AATAGAATGGACAGACTCGTCATCGTGCCAGGGTACCACGGAAGCTGACG
AACCCAGCTGCGGTTTCGTCTCCACCAAGGACGACTTTCCCGTGACGGCC
GAAGCCGGAAGCTTCAGTGCGGCGGAGAGTGGCGGGAAAGGCGAGAATTA
TGGGGCGCCGATTCCATCCGGGGACAAACTCGCGCGCGAAGCCGAAACGT
CCTCGGCTGACTCAGCGGGTGGAGAGGACCGTGAACGAGGCGAAGCTGAG
CTACGTCATAGCGGGAGGCGGGAGATGGACACCTTGCGAGTTGGAAGGTC
GTCGCCGCAACAGCCACCACCGCCACCACTCCCTGCGCCGTTGTTTCAAT
CGCGGGCCAATGACCTGGATCCTTCGAATCCGTTCGCGACCATAAGGCGT
TCACGAGGGAGGTGGGAGAAAAGAAAGAGGGGAGGGAGAAGGAGCAGGCG
GTGCAAAGGATCTCGTCGATTGAGGCTATATCACCCAGGGAGATTCTGAC
GGTATCGGCACCGGTGGTGGTCCCGTTTGCTCCAAACGCTGATGTAGAAA
TTTTTTCGAGGAAACTCGTGGACGAGGTCGACGGATCCGGGGACGCAAGA
AGGCGAGGACAAGAGGATGGATTCGTCGTCCTTGCCTCTCCCGGAGTTGG
CGCACCAAGGGTCAACGAGGGGAGTGATGCGGGCGACACGAAGGACGGAG
GCTGCGCGTCGGTCGCTGGTGAGACTTCGCAGAGAGCGCAGCGGGGAATA
GAATGGACAGACTCGTCATCGTGCCAGGGTACCACGGAAGCTGACGAACC
CAGCTGCGGTTTCGTCTCCACCAAGGACGACTTTCCCGTGACGGCCGAAG
CCGGAAGCTTCAGTGCGGCGGAGAGTGGCGGGAAAGGCGAGAATTATGGG
GCGCCGATTCCATCCGGGGACAAACTCGCGCGCGAAGCCGAAACGTCCTC
GGCTGACTCAGCGGGTGGAGAGGACCGTGAACGAGGCGAAGCTGAGCTAC
GTCATAGCGGGAGGCGGGAGATGGACACCTTGCGAGTTGGAAGGTCGTCG
CCGCAACAGCCACCACCGCCACCACTCCCTGCGCCGTTGTTTCAATCGCG
GGCCAATGACCTGGATCCTTCGAATCCGTTCGCGACCATAAGAATGCTTC
TGAAGGTTATCGAATTCCTACAACTTGAGCGCGCTCAATGCTCTGACCAC
CATCATCAAGGCGGGCTTGACGACCTCCTTTCGACGCAAACGCGACACTT
TGACCCAGCCGACGACTCCGAACGAGCGGGATCGAAATCTCGAGAAGACA
TCCGACGGTTACGGCTTGAAAACAGGAACATGCACTTTCTTCTTGTCGAA
AACCGGGAGCTGAAGAGGCAGGCGAATGCTTCTGAAGGTTATCGAATTCC
TACAACTTGAGCGCGCTCAATGCTCTGACCACCATCATCAAGGCGGGCTT
GACGACCTCCTTTCGACGCAAACGCGACACTTTGACCCAGCCGACGACTC
CGAACGAGCGGGATCGAAATCTCGAGAAGACATCCGACGGTTACGGCTTG
AAAACAGGAACATGCACTTTCTTCTTGTCGAAAACCGGGAGCTGAAGAGG
CAGGCG
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