mRNA_F-serratus_M_contig72.18419.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig72.18419.1
Unique NamemRNA_F-serratus_M_contig72.18419.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig72.18419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig72contigF-serratus_M_contig72:684263..687994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size418
Cds size417
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig72.18419.1prot_F-serratus_M_contig72.18419.1Fucus serratus malepolypeptideF-serratus_M_contig72 684263..687994 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932199.5206382-CDS-F-serratus_M_contig72:684262..6844361622932199.5206382-CDS-F-serratus_M_contig72:684262..684436Fucus serratus maleCDSF-serratus_M_contig72 684263..684436 -
1690964195.22297-CDS-F-serratus_M_contig72:684262..6844361690964195.22297-CDS-F-serratus_M_contig72:684262..684436Fucus serratus maleCDSF-serratus_M_contig72 684263..684436 -
1622932199.53718-CDS-F-serratus_M_contig72:684636..6847321622932199.53718-CDS-F-serratus_M_contig72:684636..684732Fucus serratus maleCDSF-serratus_M_contig72 684637..684732 -
1690964195.2431781-CDS-F-serratus_M_contig72:684636..6847321690964195.2431781-CDS-F-serratus_M_contig72:684636..684732Fucus serratus maleCDSF-serratus_M_contig72 684637..684732 -
1622932199.5504653-CDS-F-serratus_M_contig72:687847..6879941622932199.5504653-CDS-F-serratus_M_contig72:687847..687994Fucus serratus maleCDSF-serratus_M_contig72 687848..687994 -
1690964195.2634258-CDS-F-serratus_M_contig72:687847..6879941690964195.2634258-CDS-F-serratus_M_contig72:687847..687994Fucus serratus maleCDSF-serratus_M_contig72 687848..687994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig72.18419.1

>prot_F-serratus_M_contig72.18419.1 ID=prot_F-serratus_M_contig72.18419.1|Name=mRNA_F-serratus_M_contig72.18419.1|organism=Fucus serratus male|type=polypeptide|length=139bp
RAEGILTDIEYNDQVIEALECMHSGDAFAGADASDFVLHGHHSSAKRRKR
RVGEVEVIEGGSSDFSAAAGGTTESPATLSFVREVISVCGSEDGGGSGHG
DTGLGDDDDSRTEGEGASVGGGGGGGQSGGGKDCDGDVT
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mRNA from alignment at F-serratus_M_contig72:684263..687994-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig72.18419.1 ID=mRNA_F-serratus_M_contig72.18419.1|Name=mRNA_F-serratus_M_contig72.18419.1|organism=Fucus serratus male|type=mRNA|length=3732bp|location=Sequence derived from alignment at F-serratus_M_contig72:684263..687994- (Fucus serratus male)
CGGGCTGAAGGCATTCTCACCGACATCGAGTACAACGACCAGGTTATTGA
AGCACTCGAATGTATGCACAGCGGCGATGCTTTCGCGGGTGCCGATGCTT
CAGACTTCGTGTTGCACGGTCACCATTCGTCAGCCAAGAGGAGGAAGGTG
TGTCCGCGCCAGAGAATATTACACAGTTGGATGTGTGTGTATTTATTAAA
GGGACCGCGCAATCTGGCCCTGTCGTCCTATAGTCGTTCTATGCCACTCG
GATTGATCCTCCCGAGGGGGGATCAATGATACCCCTGGTACTTATTACGA
AAACCTCTGATCAGACCCGACAAAGGTGTGTGTGTGTGTTTTCTTCCCAT
TTATTCCGGTCGTCAAGTTCGTTGGATGTTCCAACCGAGGTCACGCAGGA
GGAAGGTCACACAGGATTTCTCATCCACCTTCCTTCTGCGGTGCGTGCCT
TTATTTTTCTCACGAGAAGGATGCAGCCTTTCCTTTCCCTTGTCGACCGT
GGTGTCGAATTTTGTGCAACGATTTAATCGTTCTCTCCACTTGTTGGGCA
TTTTTATTTATTTATTATTAGTGGTGAGGACAAACCCCAGTTACCGGGAT
TCGAACTCACCTCCCAACGTGTCAGAAGGTTACGAGGTTGCCAACTATGA
GCTACCGGGTCGACCGCGGCTATACGGACAGGGGAGTATTATTTTCCCTG
TTCAGCTGACCACGAGCAGGATTGGCAACCTTAGCTGGTTGATCCATACT
CTTGCTATACAGTACCGGCCCGCTCGTAAGAATGTACTATGCCATAAGAA
ATTGAGGATCAACTTGTTGTATCCCATAAGAAATTGGGCTCATTCGCTGC
ATATGCATACACCTCATTTTGATGTTTGCATTTCTTATGGCATACCAGTA
GACTACACCTGACGCTGTCACCCTGGATAAGGTTCTGAGCCTCACCCCAA
ATAGTGTTTCTTATACTTGTAAACGGGCCGGTACTGCTGTATGCGTGACC
ATACATACATTCATGTACATACTGCAAGTAATCTTTCTCACTTCCGGTAG
TTTTATTTTAGTTTTCACGAAAACTTTCACAACTAGCCGATAGTTCCTTT
CCACGATACGTCGGCAATTGGGTACGTTCAGGCAGTTCAGTCGTGCATCT
CGGCGCATGGTCGTCGATTTTTCGCATTGGCGGCTGGCCTCGGCGAGCTC
TTGCGCAACAGAAACGGTTGGCATCCCAAGTAGGGCCTCGAGGTGAAATA
GTCTGCTCCTCCACCATATGCTTCGACTTCCCTCTTCCCCCTAATATTTC
ACCATCGTACACTTCATTGTTTTTTTAAATTGAATTCTCACATGAGCTGA
TGCCAAAAATCCAGCCCGTGGTCACAGGGTAGAAAAAAAAAATACCATCC
GGATAACCGGGGGATGCTCAAAAGGTCTAGGTGATGTTCTGATTTTCTTT
AAAAAGAACGTACGACGTACTCTCCATACAAAGAGAAAGCGGAAATGGTA
CAACAGGGTTTCTCTGAAAAAATATTACCATATATTTATGGGGCCTATAT
TTATAATATAGTATGTGTACATCGTTGTCTCTGTTTTTGGCACATGGTGC
AACAAGGCAGGAGGACGTAAAAGGACGGTACGTACATATGTATAGATCAA
CTGGGTAAGGTGGTTGCCAATCCTGGTCGTGGTCAGCTGGCTTACCCCCG
ACGAATCTTATCATTGTCACGATGGCAATGCATACAAGCCCCCTAAGCAT
TTCCCCGGCTTGCGTTTTTATGCCTGTTCCAAGGTGCAACACCTCTAATT
TTGTCATGGGCTGGCGCCATCTAGAGAGAGGCAGTTGGCCCATGTGGACA
TAACATGTTCCTATTCTGACTGACTGCAGCCTAGGAGTTCGCTGGGTTTC
AAACTCGAAACTACGAGCACTGCAAGCACAGGATTTGTCGCCGTGAAGGT
TCATGCACCATTTCCTGTTCCTGTTGAAGGCCTGGGTATGGGAAGATGAA
AAATTATACCCCTGGTTAGGTACTTATTGAATTTACCTGTCTAAACCTGG
TACAGTTTACGTGATACAGCAGTAGCGACTGTAAAGCTCAGTACAGTTAG
TAGTATTGTCTCGGGTTCTTAGAAACCACGTGCCCCGGTTGAACACGAGG
CAAGATGATCTCTGCCGCTGCATAACCTATCTCGAGCTACTGTACAGTCG
TAGGTGGTTGTTCAGCAATCGCGCCCCCCTCTTGCCGAGAAACACCAGAG
GTGAAACGTAATTATGGGTTCAGTTGAGCTGCAAGCACGAGCTAAAACAA
TCTGTGGAAATGTTTGTACGCCATTGTCTCGCCGATATTGAAAATGTATG
AATGATTGGATACATGTATCGTCCGAACTTTCAGCAGCATATGAATATGA
ATCAACCGGGTATGTAGACTAAATACATCGTCGCCAATTCTGCTCGTGCG
CAGTTGAGCAAGGGAAAATGTGTGTTTTTCTTCTTGTCCCCGTTCGCGCC
TAAGAATTTGGTCTCGCGAGACGGATTCAGCCGCCTCGTCCCGCGTCAAC
TCGCTCATTCTCCACACTCGGGCTGAATCTGGTACATCAACACTGGTGTG
TGTGTTGTGTGTTTTCTCCCCATTTATTCTAGACGCCAGGGTTGTTGGAC
GTACCAGCCGGGGTCACACAGGAGGAAGGTCACACAGGGTTTCTCATCCA
CCTTCCTTCTGCGGTGATTGCCTTATTTTTTTCTCGCGAGAAGCTTTCAG
CCGTTCCTTTCCCTCGTCGACCGTGGAGTCGAACGTGGAGTCGAACGATT
CAATCGTTCTCCACTTGTTGGGCATTTTTTTTTTTTTTTTTTTCAGTGAG
GAAAAATCCCAGTTACCGAAGGTTTCGAGGTTACCAACTGAGCTACCGGG
GCGACCGGTTGAAGGTACAGAGAATGGGGGTATCCTTGATCTGAGGGACA
GTAGAAATATGCCCGATCTTGTATCAGCGGTAGGGTCCCCCGCGTCAGAA
GTTGCGAAGTCAGAGTCCCCTTTACCCCCCCCCCCCACATCCCTCCAAAC
AATCCTAGCGATCCATGAGATTTGTCCGACCGAACCCGTTGAAGAAGCAT
CACATCGGGGTGGCGAACCGCGCGCTTTAAGCTGTATTTTTACTGGTTAG
AAAGGCTTCGCCTGCAAGTGAACAAATCCCTAGGTATGTATTAGTACTGT
AGCTGTTTTTCACTAAATCGCCGTCTGCCTTGCAACCCCACCGGTGCGAA
CCGTCGCTGCAGAGGCGGGTAGGCGAGGTCGAAGTGATCGAGGGGGGAAG
CTCGGATTTCAGCGCGGCTGCTGGGGGAACGACCGAGAGCCCGGCGACTC
TGAGTTTTGTGAGTACCATGCATGTCCGCGCACGCGAGTCTCTCCCAGAA
GAGATCGACGAGTACCACGAGCTGAAAGTTGTCGTCTGTTGGTTTGTCTG
GGAGCGCTTCGTGTCCGCAAATCTGTCCCGGCTCGCCCTGAACACCAAGC
AGTAAGGACATATTGTTGACGGTCAAGGGTTTTGACCTTTGACCTCGTTG
CGCCGCAGGTCCGCGAAGTGATCAGCGTGTGCGGGAGTGAAGATGGCGGC
GGCTCCGGCCACGGCGATACCGGGCTTGGCGACGACGACGATAGCCGGAC
CGAGGGCGAGGGTGCGAGTGTCGGAGGAGGCGGAGGAGGCGGGCAAAGCG
GTGGGGGGAAGGACTGCGATGGCGATGTAACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig72:684263..687994-

>mRNA_F-serratus_M_contig72.18419.1 ID=mRNA_F-serratus_M_contig72.18419.1|Name=mRNA_F-serratus_M_contig72.18419.1|organism=Fucus serratus male|type=CDS|length=834bp|location=Sequence derived from alignment at F-serratus_M_contig72:684263..687994- (Fucus serratus male)
CGGGCTGAAGGCATTCTCACCGACATCGAGTACAACGACCAGGTTATTGA
AGCACTCGAATGTATGCACAGCGGCGATGCTTTCGCGGGTGCCGATGCTT
CAGACTTCGTGTTGCACGGTCACCATTCGTCAGCCAAGAGGAGGAAGCGG
GCTGAAGGCATTCTCACCGACATCGAGTACAACGACCAGGTTATTGAAGC
ACTCGAATGTATGCACAGCGGCGATGCTTTCGCGGGTGCCGATGCTTCAG
ACTTCGTGTTGCACGGTCACCATTCGTCAGCCAAGAGGAGGAAGAGGCGG
GTAGGCGAGGTCGAAGTGATCGAGGGGGGAAGCTCGGATTTCAGCGCGGC
TGCTGGGGGAACGACCGAGAGCCCGGCGACTCTGAGTTTTAGGCGGGTAG
GCGAGGTCGAAGTGATCGAGGGGGGAAGCTCGGATTTCAGCGCGGCTGCT
GGGGGAACGACCGAGAGCCCGGCGACTCTGAGTTTTGTCCGCGAAGTGAT
CAGCGTGTGCGGGAGTGAAGATGGCGGCGGCTCCGGCCACGGCGATACCG
GGCTTGGCGACGACGACGATAGCCGGACCGAGGGCGAGGGTGCGAGTGTC
GGAGGAGGCGGAGGAGGCGGGCAAAGCGGTGGGGGGAAGGACTGCGATGG
CGATGTAACGGTCCGCGAAGTGATCAGCGTGTGCGGGAGTGAAGATGGCG
GCGGCTCCGGCCACGGCGATACCGGGCTTGGCGACGACGACGATAGCCGG
ACCGAGGGCGAGGGTGCGAGTGTCGGAGGAGGCGGAGGAGGCGGGCAAAG
CGGTGGGGGGAAGGACTGCGATGGCGATGTAACG
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