mRNA_F-serratus_M_contig72.18416.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig72.18416.1
Unique NamemRNA_F-serratus_M_contig72.18416.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig72.18416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig72contigF-serratus_M_contig72:580728..583247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size889
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig72.18416.1prot_F-serratus_M_contig72.18416.1Fucus serratus malepolypeptideF-serratus_M_contig72 580733..582980 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932199.2702131-UTR-F-serratus_M_contig72:580727..5807321622932199.2702131-UTR-F-serratus_M_contig72:580727..580732Fucus serratus maleUTRF-serratus_M_contig72 580728..580732 +
1690964195.1032422-UTR-F-serratus_M_contig72:580727..5807321690964195.1032422-UTR-F-serratus_M_contig72:580727..580732Fucus serratus maleUTRF-serratus_M_contig72 580728..580732 +
1622932199.3239267-UTR-F-serratus_M_contig72:582980..5831501622932199.3239267-UTR-F-serratus_M_contig72:582980..583150Fucus serratus maleUTRF-serratus_M_contig72 582981..583150 +
1690964195.144526-UTR-F-serratus_M_contig72:582980..5831501690964195.144526-UTR-F-serratus_M_contig72:582980..583150Fucus serratus maleUTRF-serratus_M_contig72 582981..583150 +
1622932199.3398821-UTR-F-serratus_M_contig72:583199..5832471622932199.3398821-UTR-F-serratus_M_contig72:583199..583247Fucus serratus maleUTRF-serratus_M_contig72 583200..583247 +
1690964195.1549551-UTR-F-serratus_M_contig72:583199..5832471690964195.1549551-UTR-F-serratus_M_contig72:583199..583247Fucus serratus maleUTRF-serratus_M_contig72 583200..583247 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932199.294062-CDS-F-serratus_M_contig72:580732..5813671622932199.294062-CDS-F-serratus_M_contig72:580732..581367Fucus serratus maleCDSF-serratus_M_contig72 580733..581367 +
1690964195.1169767-CDS-F-serratus_M_contig72:580732..5813671690964195.1169767-CDS-F-serratus_M_contig72:580732..581367Fucus serratus maleCDSF-serratus_M_contig72 580733..581367 +
1622932199.309759-CDS-F-serratus_M_contig72:582949..5829801622932199.309759-CDS-F-serratus_M_contig72:582949..582980Fucus serratus maleCDSF-serratus_M_contig72 582950..582980 +
1690964195.1316285-CDS-F-serratus_M_contig72:582949..5829801690964195.1316285-CDS-F-serratus_M_contig72:582949..582980Fucus serratus maleCDSF-serratus_M_contig72 582950..582980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig72.18416.1

>prot_F-serratus_M_contig72.18416.1 ID=prot_F-serratus_M_contig72.18416.1|Name=mRNA_F-serratus_M_contig72.18416.1|organism=Fucus serratus male|type=polypeptide|length=222bp
MKHLLPTSAKGRGRGGGAAMLPGKKFLERTGTSPLHRAAAAGNFYCVRIL
LEAGADETALDRNGHAPLAIVGTLRKSCGDTNFTSLRAREKNKRREEDER
IRRALLKAFLYRSAAWLWPLILSNKEEKPTKKGIGKSSAGFDFSGENGKK
RGDGVGGGATKKLGVFGVFRRSRNDQEGKEKEEGDGGEEGGGRRGNVGIN
LPSCAIFRKIVRYGQKGNKNH*
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mRNA from alignment at F-serratus_M_contig72:580728..583247+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig72.18416.1 ID=mRNA_F-serratus_M_contig72.18416.1|Name=mRNA_F-serratus_M_contig72.18416.1|organism=Fucus serratus male|type=mRNA|length=2520bp|location=Sequence derived from alignment at F-serratus_M_contig72:580728..583247+ (Fucus serratus male)
AAGCAATGAAGCACCTCCTGCCGACTAGTGCGAAAGGACGAGGGCGGGGA
GGCGGGGCTGCAATGCTGCCGGGTAAGAAGTTCCTCGAGCGCACGGGGAC
CTCCCCGCTTCACCGCGCCGCCGCCGCGGGAAATTTCTACTGCGTCAGGA
TTCTGCTCGAAGCCGGCGCGGACGAGACTGCCCTGGACAGGAACGGCCAC
GCCCCCCTCGCGATCGTCGGGACGCTGAGAAAGAGCTGTGGTGACACCAA
CTTCACTTCCCTCCGCGCACGCGAGAAGAATAAGCGGAGGGAGGAGGACG
AGCGCATCCGTCGAGCGCTCTTGAAGGCGTTTCTGTACCGTTCCGCCGCG
TGGCTGTGGCCCCTGATCCTCTCCAACAAGGAGGAGAAGCCAACGAAGAA
GGGCATCGGCAAGAGCTCCGCGGGCTTTGACTTCAGCGGAGAGAATGGTA
AGAAAAGAGGCGACGGTGTTGGCGGGGGGGCGACGAAAAAGCTCGGCGTT
TTTGGCGTGTTTCGTCGCTCGAGGAACGACCAGGAGGGCAAGGAGAAGGA
AGAGGGGGATGGAGGGGAGGAGGGTGGGGGGAGGCGGGGCAATGTGGGGA
TAAACCTCCCCTCGTGCGCGATTTTCCGCAAGATCGTCAGGTGTGTGTGT
TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTATTA
AATTGCACATAACCACGCAATCCGGCCCTGTCATCCTAGTCATTCTATGC
CACTCGCATTGATCCTCCCGAGGGGGATCAATGATACTTATTACGTGTGT
GTGTGTGTGTGTATTTATTAAATTGCACATAACCACGCAATCCGGCCCTG
TCATCCTAGTCATTCTATGCCACTCGCATTGATCCTCCCGAGGGGGATCA
ATGATACTTAGTGTGTGTGTGTGTGTTACAGTGTCTGTGCAGTTTGTTTG
TGCCGAGCGTCATGAAAGAGAGGTTTATTGCGGGTTTGCGTGGGATCACA
GGCTGCAAAGACAAAACCTCTTCATGGCATTTAGACGGGTCCCCCTATGG
AAGTAACATTGGGTCAACAGTATAATGTCGGGGAGAAGCCTACCGTTATA
CTGTACAATTACATGAATCGCCATGCGGGGACACCAAACAAAAACGAAAC
ATAAACAATGTAGTACATGAATAAACAGGGTAGTAATAATATACCTGGTA
CGATGATAGCAAGTGCCATTGCACCGTACAACAAAAGGAACATTATGTTA
TTAAAACAATGAGTGGTACATTCTCGTTTTACAACTATTAATAGTCATAC
TCCGTAGTGTCTTTTTACCGTCCGTACGTGTTTGTATTTCACACTACGTG
TTACTCTTGTGACAGGAGGATGAGTAAGGTATAGGATAGCTAGTGGTGAT
GGTGGAACGGGTTTCATAGAGAGGAAAGACGCGCATTCCGAGGTGGATGG
GTGGATGGGTGGGTGTTGCCTCGTCTGGATTGCTCCTTAGCGGAAAGAGG
GTTGTATTTTTTGGATAGTTGGTATGTACAGCTTCTGAGCTTCAAACAAA
AGGAAAATAAATCACAAAAATGACCGATACCGGTACTAGAAGACAAGTTT
TCCGCCGATATTTCTATGCCCCCCCCCCACCCTCCTCCTTCCTTTTCCTT
ACCCCATCCCCGTACGTTATTGCGAGCGTTTAGCGAGCTTCTAATCTGAC
AGCTGTATCAATTTGAGCTCGGGTGTATCAAAATACGGGGCACTTTGACC
AATCATGAATGTGCCGTATGTTCCTTTTCGTAATGTCGAAAATGTTACTC
CGTCAAAAGTTTTCTCTTTATGGGAGACAGAAAAAATAAATTTCTGTCGT
ATGGGAGCGTATGGGAGACAGAAAAATGAAATTTCACATTGAACCAACAC
CTGTTTTAAGCTGACGATAGTTACAGGACTATCCTTTAGCGAGCGTATAG
CGATAGCTACCCTATCTTTTAAAATTGAAATGTACGTTTGAAATCGATAC
CCCGCCGTTTCAGGACCTATGGACCAGCAAAAGCACACTGTGGAAAGCGA
TAAAGCGCAAAAAGTGCCTTTGGCATGACCGCTCGCTTCCGCCACAAACT
CGCAAAAGACCAAAATGGCGTTTGTTTTTTTCCCCCCCATTTTTGTTACA
TCCAACCCCTTCCCTTCCCTTCCCTTGTCCCCTTTTGTTAAAAATGGCAT
TGTTTTGTTTTTGTTTTTCCAGGTACGGCCAAAAGGGAAACAAGAATCAT
TGAAGACTGGTTGAGAATGGTCGACCCAAAGCGGCGCGGCTTGAACACCA
AAGCAACAACAGCAGCAATAACCCACAATCAGGGTAACAAACAAGGAGCA
GGATAGGCAAGGCAAAAGGCAAAATATGACCAAAAATACGACAACACCAG
GAACGGGTAGAACTGCCCCTCCCCCCCCCCCCCCCAATTCATTCGAGCGA
TGAATGCAAGGGGTTTCCTCTACAAGAGGAGGCGTTTTAGACGAGGATCA
AAGTAGTGTCATCGATCTTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig72:580728..583247+

>mRNA_F-serratus_M_contig72.18416.1 ID=mRNA_F-serratus_M_contig72.18416.1|Name=mRNA_F-serratus_M_contig72.18416.1|organism=Fucus serratus male|type=CDS|length=1332bp|location=Sequence derived from alignment at F-serratus_M_contig72:580728..583247+ (Fucus serratus male)
ATGAAGCACCTCCTGCCGACTAGTGCGAAAGGACGAGGGCGGGGAGGCGG
GGCTGCAATGCTGCCGGGTAAGAAGTTCCTCGAGCGCACGGGGACCTCCC
CGCTTCACCGCGCCGCCGCCGCGGGAAATTTCTACTGCGTCAGGATTCTG
CTCGAAGCCGGCGCGGACGAGACTGCCCTGGACAGGAACGGCCACGCCCC
CCTCGCGATCGTCGGGACGCTGAGAAAGAGCTGTGGTGACACCAACTTCA
CTTCCCTCCGCGCACGCGAGAAGAATAAGCGGAGGGAGGAGGACGAGCGC
ATCCGTCGAGCGCTCTTGAAGGCGTTTCTGTACCGTTCCGCCGCGTGGCT
GTGGCCCCTGATCCTCTCCAACAAGGAGGAGAAGCCAACGAAGAAGGGCA
TCGGCAAGAGCTCCGCGGGCTTTGACTTCAGCGGAGAGAATGGTAAGAAA
AGAGGCGACGGTGTTGGCGGGGGGGCGACGAAAAAGCTCGGCGTTTTTGG
CGTGTTTCGTCGCTCGAGGAACGACCAGGAGGGCAAGGAGAAGGAAGAGG
GGGATGGAGGGGAGGAGGGTGGGGGGAGGCGGGGCAATGTGGGGATAAAC
CTCCCCTCGTGCGCGATTTTCCGCAAGATCGTCAGATGAAGCACCTCCTG
CCGACTAGTGCGAAAGGACGAGGGCGGGGAGGCGGGGCTGCAATGCTGCC
GGGTAAGAAGTTCCTCGAGCGCACGGGGACCTCCCCGCTTCACCGCGCCG
CCGCCGCGGGAAATTTCTACTGCGTCAGGATTCTGCTCGAAGCCGGCGCG
GACGAGACTGCCCTGGACAGGAACGGCCACGCCCCCCTCGCGATCGTCGG
GACGCTGAGAAAGAGCTGTGGTGACACCAACTTCACTTCCCTCCGCGCAC
GCGAGAAGAATAAGCGGAGGGAGGAGGACGAGCGCATCCGTCGAGCGCTC
TTGAAGGCGTTTCTGTACCGTTCCGCCGCGTGGCTGTGGCCCCTGATCCT
CTCCAACAAGGAGGAGAAGCCAACGAAGAAGGGCATCGGCAAGAGCTCCG
CGGGCTTTGACTTCAGCGGAGAGAATGGTAAGAAAAGAGGCGACGGTGTT
GGCGGGGGGGCGACGAAAAAGCTCGGCGTTTTTGGCGTGTTTCGTCGCTC
GAGGAACGACCAGGAGGGCAAGGAGAAGGAAGAGGGGGATGGAGGGGAGG
AGGGTGGGGGGAGGCGGGGCAATGTGGGGATAAACCTCCCCTCGTGCGCG
ATTTTCCGCAAGATCGTCAGGTACGGCCAAAAGGGAAACAAGAATCATTG
AGTACGGCCAAAAGGGAAACAAGAATCATTGA
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