mRNA_F-serratus_M_contig72.18415.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig72.18415.1
Unique NamemRNA_F-serratus_M_contig72.18415.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig72.18415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig72contigF-serratus_M_contig72:578089..578559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size473
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932199.6384768-CDS-F-serratus_M_contig72:578088..5785591622932199.6384768-CDS-F-serratus_M_contig72:578088..578559Fucus serratus maleCDSF-serratus_M_contig72 578089..578559 +
1690964195.2953854-CDS-F-serratus_M_contig72:578088..5785591690964195.2953854-CDS-F-serratus_M_contig72:578088..578559Fucus serratus maleCDSF-serratus_M_contig72 578089..578559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig72.18415.1prot_F-serratus_M_contig72.18415.1Fucus serratus malepolypeptideF-serratus_M_contig72 578089..578559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig72.18415.1

>prot_F-serratus_M_contig72.18415.1 ID=prot_F-serratus_M_contig72.18415.1|Name=mRNA_F-serratus_M_contig72.18415.1|organism=Fucus serratus male|type=polypeptide|length=157bp
SKVDAVDPASGRTALHEAAVTGQVSLAKTCIGFSADMEKKVLRLGATVAE
AEADEEDEDAKCFAGCYTPLQLAAGAKSGDMIRELISAGARLDVVEASTG
DAVLHRAAVSGSVEVVERLVKAGADLEATNARGERPLHLAARKESRLEVV
RCLVRLG
back to top

mRNA from alignment at F-serratus_M_contig72:578089..578559+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig72.18415.1 ID=mRNA_F-serratus_M_contig72.18415.1|Name=mRNA_F-serratus_M_contig72.18415.1|organism=Fucus serratus male|type=mRNA|length=471bp|location=Sequence derived from alignment at F-serratus_M_contig72:578089..578559+ (Fucus serratus male)
TCGAAGGTCGACGCCGTGGATCCTGCATCTGGCCGGACCGCTCTGCACGA
GGCCGCGGTGACCGGCCAGGTGTCCCTGGCAAAAACCTGCATCGGGTTCT
CGGCAGACATGGAGAAAAAAGTGCTCCGCTTGGGAGCGACGGTGGCCGAG
GCCGAGGCTGACGAGGAAGACGAGGACGCCAAGTGTTTCGCTGGGTGCTA
CACGCCTCTGCAGCTGGCCGCGGGCGCCAAGAGCGGTGATATGATCCGAG
AGCTGATTTCCGCGGGAGCCAGGCTCGACGTCGTGGAAGCCTCGACGGGG
GACGCGGTGCTGCACCGGGCGGCCGTCTCTGGCAGCGTCGAGGTCGTGGA
GCGTCTTGTGAAGGCCGGGGCCGACCTCGAGGCGACGAACGCCCGAGGAG
AGAGGCCCCTGCACCTCGCCGCGAGGAAGGAGAGCCGTCTCGAGGTGGTC
CGGTGCTTGGTCAGGCTCGGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig72:578089..578559+

>mRNA_F-serratus_M_contig72.18415.1 ID=mRNA_F-serratus_M_contig72.18415.1|Name=mRNA_F-serratus_M_contig72.18415.1|organism=Fucus serratus male|type=CDS|length=942bp|location=Sequence derived from alignment at F-serratus_M_contig72:578089..578559+ (Fucus serratus male)
TCGAAGGTCGACGCCGTGGATCCTGCATCTGGCCGGACCGCTCTGCACGA
GGCCGCGGTGACCGGCCAGGTGTCCCTGGCAAAAACCTGCATCGGGTTCT
CGGCAGACATGGAGAAAAAAGTGCTCCGCTTGGGAGCGACGGTGGCCGAG
GCCGAGGCTGACGAGGAAGACGAGGACGCCAAGTGTTTCGCTGGGTGCTA
CACGCCTCTGCAGCTGGCCGCGGGCGCCAAGAGCGGTGATATGATCCGAG
AGCTGATTTCCGCGGGAGCCAGGCTCGACGTCGTGGAAGCCTCGACGGGG
GACGCGGTGCTGCACCGGGCGGCCGTCTCTGGCAGCGTCGAGGTCGTGGA
GCGTCTTGTGAAGGCCGGGGCCGACCTCGAGGCGACGAACGCCCGAGGAG
AGAGGCCCCTGCACCTCGCCGCGAGGAAGGAGAGCCGTCTCGAGGTGGTC
CGGTGCTTGGTCAGGCTCGGGTCGAAGGTCGACGCCGTGGATCCTGCATC
TGGCCGGACCGCTCTGCACGAGGCCGCGGTGACCGGCCAGGTGTCCCTGG
CAAAAACCTGCATCGGGTTCTCGGCAGACATGGAGAAAAAAGTGCTCCGC
TTGGGAGCGACGGTGGCCGAGGCCGAGGCTGACGAGGAAGACGAGGACGC
CAAGTGTTTCGCTGGGTGCTACACGCCTCTGCAGCTGGCCGCGGGCGCCA
AGAGCGGTGATATGATCCGAGAGCTGATTTCCGCGGGAGCCAGGCTCGAC
GTCGTGGAAGCCTCGACGGGGGACGCGGTGCTGCACCGGGCGGCCGTCTC
TGGCAGCGTCGAGGTCGTGGAGCGTCTTGTGAAGGCCGGGGCCGACCTCG
AGGCGACGAACGCCCGAGGAGAGAGGCCCCTGCACCTCGCCGCGAGGAAG
GAGAGCCGTCTCGAGGTGGTCCGGTGCTTGGTCAGGCTCGGG
back to top