mRNA_F-serratus_M_contig719.18407.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig719.18407.1
Unique NamemRNA_F-serratus_M_contig719.18407.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig719.18407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig719contigF-serratus_M_contig719:384176..392022 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size358
Cds size348
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig719.18407.1prot_F-serratus_M_contig719.18407.1Fucus serratus malepolypeptideF-serratus_M_contig719 384176..392014 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932196.863308-CDS-F-serratus_M_contig719:384175..3843761622932196.863308-CDS-F-serratus_M_contig719:384175..384376Fucus serratus maleCDSF-serratus_M_contig719 384176..384376 -
1690964194.0960386-CDS-F-serratus_M_contig719:384175..3843761690964194.0960386-CDS-F-serratus_M_contig719:384175..384376Fucus serratus maleCDSF-serratus_M_contig719 384176..384376 -
1622932196.8767216-CDS-F-serratus_M_contig719:391867..3920141622932196.8767216-CDS-F-serratus_M_contig719:391867..392014Fucus serratus maleCDSF-serratus_M_contig719 391868..392014 -
1690964194.1066804-CDS-F-serratus_M_contig719:391867..3920141690964194.1066804-CDS-F-serratus_M_contig719:391867..392014Fucus serratus maleCDSF-serratus_M_contig719 391868..392014 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932196.8915377-UTR-F-serratus_M_contig719:392014..3920221622932196.8915377-UTR-F-serratus_M_contig719:392014..392022Fucus serratus maleUTRF-serratus_M_contig719 392015..392022 -
1690964194.1166303-UTR-F-serratus_M_contig719:392014..3920221690964194.1166303-UTR-F-serratus_M_contig719:392014..392022Fucus serratus maleUTRF-serratus_M_contig719 392015..392022 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig719.18407.1

>prot_F-serratus_M_contig719.18407.1 ID=prot_F-serratus_M_contig719.18407.1|Name=mRNA_F-serratus_M_contig719.18407.1|organism=Fucus serratus male|type=polypeptide|length=116bp
MRSPVAMMRAALSSSMPVAPSPVPAFCRHHPAEESIFRFVRTGDCRISGR
KSPLKAGKNSPHDSNRQDSAQRKAGRFRLANSAQRVRSSVAVYPPLYCPE
RGSKSSAVSHGNAAGQ
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mRNA from alignment at F-serratus_M_contig719:384176..392022-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig719.18407.1 ID=mRNA_F-serratus_M_contig719.18407.1|Name=mRNA_F-serratus_M_contig719.18407.1|organism=Fucus serratus male|type=mRNA|length=7847bp|location=Sequence derived from alignment at F-serratus_M_contig719:384176..392022- (Fucus serratus male)
CCAGGCATATGAGGAGCCCGGTGGCGATGATGAGAGCGGCCTTGAGCTCG
TCGATGCCGGTCGCGCCATCACCCGTGCCTGCATTTTGCCGCCACCATCC
CGCGGAGGAGTCGATTTTTCGATTTGTGCGGACGGGAGATTGCCGGATCA
GTGGGGTGAGCCAACAGAACGTTCTTCTCAATTTATTTTGCTGCTTCTCT
AGTTCTCTTGTTTTACTCTTATACTGTATACCTAGGTGGTAGACTATAGC
CTATATAGTGATAACTTGTCATTTCATGCTGCTGCTTGTCACACAAGTCC
ACGCTAACCCATACTGGTAAGCAGGAGAGTGATGTACGTGCTGGCTTCAT
TGAAGGCCACTCGTACCGGACAGACAGGGGGGATTCGATTGACCCTTTCA
GCAAATTTCCCAAGGTGGCAGTTTTTTTTCCGCCTTACGAAATGACAAAC
GGACCGGGATTTTATGTTACGAAGAGGTTTAACACTCCGATCTTAACCCG
AGATGGCCAATTCTATCCCTCTCTCTCTATATATGTATAGGTGACCTGCA
TACCTGCTAGTGCGGAAGTCGTGAGTTCAACTCTTAGCTTAAGCAGAATT
TTTGTTCTTTCTTTCGTAACGGAAAGCGTGGGAACGTGAGTAAGTAATGT
TCAACCATTGGTTGACGAGTTGTAAATGTGCTGAACTTGCATCGCGATAA
AAATTGCAAGGCGTGAACCGGGGAGAGATGGGAAGATCCTTTGTGACCAC
AGGCAGGATGGTAATTAGAGGTCCATCGGCTATAAGTGTAAAAGTACCGA
CCTCCCTTATTATCCGCTACAATAAATTATATTCGCACTCAGAGACGTTA
ACGGCTCTAATTACTCCGTTAACCGCTCTTTCATCTCGATCTGAACTCCA
TTTTCCCCTCCCCGCTTTAGGGAAGATAAAACATCTGGCATACCATCCCT
CTTGTCGCGAGCGTAAAAGTCAGCAGTGACTCGGTTTTTCTTCTACAAGG
AGTGAGACTTGGCTACAATACAGCACAATGCCAATACTTTAGCCGTCATT
TTCTTTCCCCTATACAACAAACTATTAATAGATAAACTTAGTAATAACGC
GTCATCAACAAGACTTGAAATACTTGCGACCAGTATGAAATAATTAGCGC
ACAGCAACTCGTAAACAAGTTTTATATAGGACTTTATAGACCGAGTTCAA
CGAGGATAAAACATACTAATCTGATGACACAGGTCGAGTTCAGGAAGTAG
ACAAAACGGGGGTCGCTGGTAGTCCACCCCCCCCCCCCCTTCCCCCATCT
CCCGCACCCTAAACCCGACCGCGTGGTCATTCAGGGCAAAGAGCCAGCAG
GCGTCGGTGCATCTCCAACAGTCCGACGTGCTTGAGCCAGTCGATTGCTT
GACGCGGGTTCGACTGAGCGAGCACTGCTCGATCACAGTTGGAATGAGAA
GTCCCGCGATCGATTGATCGCCACTCATTATATATCGCCGTTACTTTCAA
CATGCCCACTTCATATCAATAGTGGGTGTGGGAAAGAGAGCCGTACATTA
ATTGGTCCATGGTTACCTGCCAAGGCAGCACTCGTTCGGAGCTACCTTGA
GGTTTACTGGCCCTGTGCTGACGGACTCTCGTCAGTGAACGCCATCGGTA
CGCAATTGCGTGACCCGATAAACTCGGGACTTACCCGATGACGTATGGCG
GTTTAATATGAATATATGAACGCCACCGCGGAACTCGGGAGAATTCCCGT
AAGTAAGCACCATATTCAGCCTGAGTATGCAGATAGCAGGCTGACGCGGG
ACGGGACTGCCGAAACCATCTCGCGAGACAAAATTCTCAGGCACGAACGC
GGACAGGCGAATATTCTTTTCTCTGTTCAGCTGACCACGAGCAGGGGATT
GGCAACCTTACCAGGTTGATCAATACTCTTGCTATATGTGTGAGGACTAT
GACCATACATACATATAGCAAGAATACCCCTCCCAAGATGCCGTCATTTG
TCAAGGGTTCTCTTTGGTGCCTACCTTCCAACTCGTCGGCGTGGGCGCTG
CCGTCCCCCCCGGAACCGGTGGCCACGACAGATTCGTACTCGCTACAGGC
CGAGGTTTCGGCGGTCGCCGCGCCGAGTACACAAACGCTCAGCTTCCTCC
GCCGCTTGACGTCCCAGTCCACCGGTGCCCAACCCACGATGCGGAACTCG
AGATACACCAGCCCGTCGTTCGGATGATTCTGCCGCGTACGAAGGATCAA
CATCCCCCCCGCCCAGGATGGAACACGACAAAAAAAATAGAAACCCTTGG
CGTCGTCTGTGCGAGGTGTACTACAGTGGTAAGTAGCTGCTCAAGCGGAC
TGACTGCCTCCGTTCTGGCCAGAGTAGTTTTTTGTACCGTACATCGATGT
AGTAAAAGCTCTCGACATCAGACAATCTCGGGGTTTACACTTCGTGGGAG
GCCTGGACGATGGCCTTAGAAGGAGAGTTTTAAGTACACACTTCTTATCA
ACACTTCGGCACTGTATTTATAATGGTTGTGATCGTACACGGAGAGATGT
TCTCCTCTATGGCCGACGTTCGAGTTGAGGAGCAGCAAACGTATGATCGT
CTAAGGTACGGCAGAACGTCAACCTGTTCGGGAGGGAGAGGGCCCGTGAC
GATTTATTCACAACAGTCACTCGTAACGCCCTCATTCTTTATTCGAGCAA
ACCTCGTGCCCTCTCCCTCCGAAACCTGGTTTCGGGGTCTGAGTGTGGGA
GGGTCTCTCCAGCGGGTGTAGGGCCGGGCTCACCCTCGAAAGATGCAGCC
AACTGGCTGCCTTCGCGATTCAGCCGGTCGGTTTGAGACGCGGCGGCAGT
ATTATTGGTTGAGGATGGGTGGTATTCCCAGGTGCGCGCCTCTTCCGAGC
TCCAACTGGCGCCCTTCGGGAGGTGGCGGCACGCGAGAGGCAAGGAGCAC
TCTCGCGGAGAGCCTCGTAGCGCTCTATCGGTTGGGTACGCACCAGATTC
GGTGGAGGCGGAGGGCAGCTCGATCGTTGACGAGCCAGAGGAGTGCTGAG
TTCCTGTGCGCGATAATCAAAGGCGGGAACCGGGAGGTTCCTGAGGGAAA
AGCTGATCTCTGACCACGGTTTGTTTTCTTCCCACGAGGGTCAGCAGGGA
GCGACAAACGGGCAAGATTCGTCGGGATTTTTCAGGGATGCTCAGAACTT
TGGACGGCTGGATGTTGGCTCGCGCGCCGGCTTCACCAGATCAAGGACTC
CACCACCATGGACCTTTCAATTTTCCTTATTTCTGTACACTATGTGGGGC
GACGAGAAACTTGGGTTTGTTGATCAAAACTGATTGGAGCGCGATTTGTC
CGCTTTGTCGTTGAGAACGCTAGCCGTGGGTAGGCGACAACAATCCGCAT
CGATCGAGGTAGCTCTCGATATGGAGAAAGGAGATTTATAGAACCGTTTT
GACATTATTGGTCGGTGCCATTGCTTGCGAAGTGTCGCACAACTTGTCTT
CGTGGATAACCCTCCGATATGATAGCTAGAAAAACGTTTCGAGTCACCTT
TGATTACTTTGCTCGATGGACAGCACGTCAGGCAGTCTCCTCTCCGTAGC
TTGTAATTCAGATTCTGAAATACTGGCAGCACTCCAGACAGTAGAAACTA
CTGTAGTTCGTACCCAAGGACATCTTCTTGACGCCGATAAGTTTCCGATG
TTCTCGATCGGTTGGGCCTGGCAATGATTTTTTGTCGCGATTTGGACCCC
TTTTGGTCTGAGTAGCGGCTTGTCACCACGATGTGACCCGTCGACCTTCG
TGCCTCTTTGTGGCCACGAGCGGGATCGGCATTTGATAGGGTTTGTACTA
CGGATGACTCATTGTGTCTCGGTAGTTTCTTCATATGCAAGGACAAGACG
CTGAATATGAGGCATATATAAAAAATCAAACGGGGCGGACACATGACCAA
CAAGTTGTTGGCACGTTTTCGTCTCACCCGGGTTCATCCCGGTCGCCATG
TACCCACCGAGCCGGGACTGACTCCTACCCCAAAAAATCCTTGAGAGCGC
CGTTAGAAAGAGGTGGAGGGTGTGTGTTTGCGTACAGCTCATCGCAAGGG
CTGCGTGGGAAACTAAACAAGTGCACAGAACGGACACCATCACGCGTTAG
AGGCTTCTTTGTGGAACGGCTGCGTCAGCCAATCAGCATCGTCCAAGGAG
AAAGCGAAAGCCAATAGGGTTCAAGTATCAGATCCGATGCCAACCGAAGA
TATCGAACACGTGTATACTGTATATATATATATATATATATATATATATA
TATATATATATATATCTGTCGATGGTGCCATCAAGAGTGGATGGGGTGTT
TCCTGAACGATCTCAGAGTTTTCGGCATCAACGCCGACCAGTGGACCACT
GCAGCCCAGGACGAGGGGAAATGGCGCAGAACGGCAGAACAAGGGGCGGA
ACATTTCATGGCGAAATGGATCGTTGCCGAGAAAGCCAAGGCTGGACTAC
GACATGCAGTGGTATGCCCGAACGTGACGGGAAGGACCAAGAAGAGGATA
GTCCAAAGCAAGCGGGCTCGTGCTGGTTCGCTCGCCCTTGTTGGCTAGTC
ATAAGTGGCGCGAACTGGTATCCTCCGGGCGGTTCGTTTGCAGATCCCAT
GGCGTTGTTCTCTGGTGTCACGTTTGTTTTGTTTTGCTTTGTTTTCGTCT
CTATGCTTTCGTTGAAGCCGCGGCCCTTCGTTCACTCGTCCTTCGATGTG
CAGGAGTCTTGATAGTCACACGTTTTTCTTTCTTTTTCTTTTTTCTTTTT
GTTTATTTGGAGATGCCGCTTTTTCCCAGGGTTCTACGCGGTAGCGCTTT
AAAAAAATGGTAGAAAATGGTACGGTTTGGAGTTCCACGGTTTTTCAAAC
GGTACGGTATATGGTATCTGAGTTTACGGTATCTGATGGTACGTTTGCCC
ACACCACGGTTTTTCAAATGGTATCTGGTTACGGTATCCCAACATTGCGG
TAAGCAAATGGCACGGTATATGGTAAAAACAAATCTTCGCGGTAGGCAAA
TGGCACGGTATATGGTAATAATGTTTCTTCGCGGTAGGCAAATGGCACGG
TATATGGTAACATTTTCTTCGCGGTAGGCAAATGGCGCGGTTACGGTAAC
ACGGGCTGACATAACGCAGTCCTGGACTTCTATGCAACTGACCTCGTTAC
TTGTTCTCAGAACACCGGGCTTGAAAAAGAAAAACACGCGCTCTAAGCCC
AACGTATGAGTTTGTACTCTACACCCCCCCGTGCGCGCGCGCCTCGCCCT
CTCTCCCTCTCTCTCCATCCTGTGTGGTATGCGCTATTGCCAACCCGCTC
TACCAACTGTCCAAAGAGCTTCGAATGAAAGTATTCCTCGCTGTCACCAG
TCACTATCATTTACAGGTCGATCTCAATCAAATCGCCGGCCGCCTCGTTC
TGTGTCTTGCCAGTGTCCTCTCTGCACTGGTGTCGGCGCGCCTGCTGCCT
GTCAATAACCCTGTTATACGCCGCAATCTCCGGGATATACCTCTGGTTCA
GTCTCAGGAACATCATCTGTTCCACCTTGAAGGCGCCCATTCTCGACCGC
ATGTTGCCGATGAGCAGAGCGAGAGCAGAAAAGTTCCGCTCAGCCTTGCA
GCTCGTGGCCTCGACCCCGTGGTAAAGGCGTGCGAGGAGTGCGAGATGCG
GCATAGCCGCTTCCTCGATAACCTCGCCTGTCGCTTGAGAAAGCTTAGGG
GAGTCCCTTCGCCGCCAAAACCCCGGCAAGGAAAATCCGTCTTCTTCCAG
CTCCACCCCTTTTCTGCTACATAACTCGTCAGCTCTTGGAGAACACGGAC
CTTGTGCGTGATGCTTGGCCCCGACCCGCTCTCTGCCTCATCTCCAGCGG
CACCCACACTCCCAGCGGCAGCCAGTCTGTTGGCGCGTCGCTGCTCCATA
ACGGAGAGCATCCGTGGCTTCTTTGCCAGTGGCCCCGTTGCCACCAGGCT
GTCCCGAGCCTCTCGACGGTTTTGGTCTGTCTTGAACCTTTGGCTCAGAA
GTGCTTCATGCACCAACCCTACACACATACCAATCATCCCCTGACAAGTA
CAATACTCCTATGCATACCCTCCTGTACCTATGTAGTGACAACTGCTGTG
TGTTCTACTACATGCAGTATTTCTGGTATATTTTATATTTGTATAATCGA
TGGACAACCTGATGTCATTGTGACAACCATTGTACAGTGTACCCTCAGCA
GTCGCCTCCACAATTACTCAGACTGAGGATGAATTACCGCTGTAGACTTC
TGTTTATGTCCATGGTAAGTGTATGGTACGGGATATGGTAGCTGAAGAAT
TCCACGGTTCAAAACGGTATATGGTACATATTTGTACGTTTTTTTAAAAA
TACTACGGTTCTAAATGGTATATGGTAGAAATGGTACGGTTTTCTGAAAA
TGTTACGGTTTTAAAAACGGTACGGTATATGGTATCTCACGACCACGGTA
TACCATGGTAAGCCTTACCGCGGTAAAAACCGCGGTAAACAACCGCGGTA
AATTTACCGTGTAGATCCCTGCTTTTTCCGAATATTTTTTTTTAGTACCA
TTTCCGCTTTATCTTTGTATGGAGAGTACGTCGTACGTTTTTCCTTTCCG
GATGAGGGTGTTTTTCTGGTTTTTCTTCCTTGTGACTACGGGCTGGATTT
TTGACATCAGCTTATGTGAGAATTCAATCAATCAATCATTGCACGACAGC
ATTTCAAGTATTTATAGTGTTTCTCACATTCAGCGTATTGGTTGCCAACC
CCCATAAACTACAATATGAGTAGGAGTATTAAAAAAATTCTTCATATTAT
TTATAGTATTTATATTACAACATAGTGTAGCGCAGTAGTTGGAACTATAT
TAGATACCAGATTCTCAGCCTGAGTGTGGAGAATGAGCAGGCTGGCGCGG
GACGGGACAGCCGAAACCGTCTCGCGAGACCAGATTCCCCGTTCGTTTTG
ATTCATACGAACGTGGGCAGGGAAAAGTTTTTTTTTTCTTTTTTCTGTTC
AGCTGACCCCGAGCAGGAATGGCAACCATATGAAATACTCGGTTGCCCCA
TTCTCTACTGAAAGTGCTATTTTTTTATTTATTTTTTATTTTTTCATCTC
ACTTATAGCCGATGTGCCTCATTACCATCCTGCCTGTGGTCACTAAGGAT
CTTTCCATCTCTCCCCGGTTCACGCCTTACATTTTTTTTATCGCGATGCA
AGTTCAGCACTCTTACAACTCGTCAACCAATGGTTGAATTTTACCTACTC
ACGTTCTCACGCTTTCCGCTACGGAAGAAACAAATAAAATCCTGAAGCCA
AGAATCGAACTCACGACCTCCGCCCTAGCAGGTGTGCAGGTTACCTACTA
GACCACTCGAGCAGCGAGGGCAAAGACTATACATACGTACGTTTTGTTAC
ACGATTGGTTCATTTGATTTTTCAATAGTTTATCAATCTTTTGCGTTGCA
TTTTTTTTGTTCATATGTTTTTTCCCAATCGCGATACAAGTTTATTTTAC
CGTAGTACTTTATTTTATTACCAGGGTACACGCTTCGTCAACCAAATGAC
TGAATTTCGCTCTTTTGCTCACGCTCTCACGCCCGCTCCTCGGCAGCGGA
AATCACCATTGAAAGCGGGAAAAAACTCGCCACACGATTCCAACCGCCAG
GATTCCGCTCAACGGAAAGCAGGACGATTCCGACTGGCAAATTCCGCACA
ACGGGTACGCAGCAGTGTCGCGGTTTACCCACCACTGTATTGCCCCGAAC
GCGGCTCAAAGAGTTCGGCAGTTAGCCATGGCAACGCCGCCGGGCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig719:384176..392022-

>mRNA_F-serratus_M_contig719.18407.1 ID=mRNA_F-serratus_M_contig719.18407.1|Name=mRNA_F-serratus_M_contig719.18407.1|organism=Fucus serratus male|type=CDS|length=696bp|location=Sequence derived from alignment at F-serratus_M_contig719:384176..392022- (Fucus serratus male)
ATGAGGAGCCCGGTGGCGATGATGAGAGCGGCCTTGAGCTCGTCGATGCC
GGTCGCGCCATCACCCGTGCCTGCATTTTGCCGCCACCATCCCGCGGAGG
AGTCGATTTTTCGATTTGTGCGGACGGGAGATTGCCGGATCAGTGGGATG
AGGAGCCCGGTGGCGATGATGAGAGCGGCCTTGAGCTCGTCGATGCCGGT
CGCGCCATCACCCGTGCCTGCATTTTGCCGCCACCATCCCGCGGAGGAGT
CGATTTTTCGATTTGTGCGGACGGGAGATTGCCGGATCAGTGGGCGGAAA
TCACCATTGAAAGCGGGAAAAAACTCGCCACACGATTCCAACCGCCAGGA
TTCCGCTCAACGGAAAGCAGGACGATTCCGACTGGCAAATTCCGCACAAC
GGGTACGCAGCAGTGTCGCGGTTTACCCACCACTGTATTGCCCCGAACGC
GGCTCAAAGAGTTCGGCAGTTAGCCATGGCAACGCCGCCGGGCAGCGGAA
ATCACCATTGAAAGCGGGAAAAAACTCGCCACACGATTCCAACCGCCAGG
ATTCCGCTCAACGGAAAGCAGGACGATTCCGACTGGCAAATTCCGCACAA
CGGGTACGCAGCAGTGTCGCGGTTTACCCACCACTGTATTGCCCCGAACG
CGGCTCAAAGAGTTCGGCAGTTAGCCATGGCAACGCCGCCGGGCAG
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