mRNA_F-serratus_M_contig719.18406.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig719.18406.1
Unique NamemRNA_F-serratus_M_contig719.18406.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig719.18406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig719contigF-serratus_M_contig719:380181..380659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size479
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig719.18406.1prot_F-serratus_M_contig719.18406.1Fucus serratus malepolypeptideF-serratus_M_contig719 380281..380610 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932197.6130583-UTR-F-serratus_M_contig719:380180..3802801622932197.6130583-UTR-F-serratus_M_contig719:380180..380280Fucus serratus maleUTRF-serratus_M_contig719 380181..380280 +
1690964194.3255675-UTR-F-serratus_M_contig719:380180..3802801690964194.3255675-UTR-F-serratus_M_contig719:380180..380280Fucus serratus maleUTRF-serratus_M_contig719 380181..380280 +
1622932197.6485147-UTR-F-serratus_M_contig719:380610..3806591622932197.6485147-UTR-F-serratus_M_contig719:380610..380659Fucus serratus maleUTRF-serratus_M_contig719 380611..380659 +
1690964194.3579497-UTR-F-serratus_M_contig719:380610..3806591690964194.3579497-UTR-F-serratus_M_contig719:380610..380659Fucus serratus maleUTRF-serratus_M_contig719 380611..380659 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932197.6326756-CDS-F-serratus_M_contig719:380280..3806101622932197.6326756-CDS-F-serratus_M_contig719:380280..380610Fucus serratus maleCDSF-serratus_M_contig719 380281..380610 +
1690964194.3447785-CDS-F-serratus_M_contig719:380280..3806101690964194.3447785-CDS-F-serratus_M_contig719:380280..380610Fucus serratus maleCDSF-serratus_M_contig719 380281..380610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig719.18406.1

>prot_F-serratus_M_contig719.18406.1 ID=prot_F-serratus_M_contig719.18406.1|Name=mRNA_F-serratus_M_contig719.18406.1|organism=Fucus serratus male|type=polypeptide|length=110bp
MLNDPLGPLDGLFEVYEMLAKRQPFIFPPLRVVGSPHNHSRTLLPHELLH
DPICSGGGREGPSTYTSRVAHHLPLRRFRGTCRGQRASTPANPASPEGHG
LCAPAAAAL*
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mRNA from alignment at F-serratus_M_contig719:380181..380659+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig719.18406.1 ID=mRNA_F-serratus_M_contig719.18406.1|Name=mRNA_F-serratus_M_contig719.18406.1|organism=Fucus serratus male|type=mRNA|length=479bp|location=Sequence derived from alignment at F-serratus_M_contig719:380181..380659+ (Fucus serratus male)
CGGGGTTTCCAGCATTTTTTAATGGCTCCTCTAGAGTCTCCGACCCGTCG
TCCGTTGAAATAATGGAGGAGCGGAGCCAAGTCCCGCTGTTGCCCCTACG
ATGCTGAATGACCCTCTCGGGCCGCTCGATGGTCTTTTCGAGGTGTACGA
GATGCTGGCCAAACGTCAGCCCTTTATTTTCCCCCCGTTGCGCGTAGTTG
GCAGCCCGCATAACCACAGTAGGACGCTCCTCCCACACGAACTCCTCCAT
GACCCCATCTGCAGCGGTGGGGGTCGGGAGGGCCCATCCACGTACACCTC
GAGGGTCGCGCATCATCTCCCTTTGCGACGATTTCGCGGAACATGCAGAG
GTCAGCGTGCAAGCACCCCCGCGAACCCAGCATCGCCTGAAGGCCATGGG
CTCTGCGCCCCGGCAGCAGCGGCCTTGTAGTAACCTCACGTTTCCCCACC
GTATGGAGGAACTTCCGGTACGTCTCCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig719:380181..380659+

>mRNA_F-serratus_M_contig719.18406.1 ID=mRNA_F-serratus_M_contig719.18406.1|Name=mRNA_F-serratus_M_contig719.18406.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig719:380181..380659+ (Fucus serratus male)
ATGCTGAATGACCCTCTCGGGCCGCTCGATGGTCTTTTCGAGGTGTACGA
GATGCTGGCCAAACGTCAGCCCTTTATTTTCCCCCCGTTGCGCGTAGTTG
GCAGCCCGCATAACCACAGTAGGACGCTCCTCCCACACGAACTCCTCCAT
GACCCCATCTGCAGCGGTGGGGGTCGGGAGGGCCCATCCACGTACACCTC
GAGGGTCGCGCATCATCTCCCTTTGCGACGATTTCGCGGAACATGCAGAG
GTCAGCGTGCAAGCACCCCCGCGAACCCAGCATCGCCTGAAGGCCATGGG
CTCTGCGCCCCGGCAGCAGCGGCCTTGTAGATGCTGAATGACCCTCTCGG
GCCGCTCGATGGTCTTTTCGAGGTGTACGAGATGCTGGCCAAACGTCAGC
CCTTTATTTTCCCCCCGTTGCGCGTAGTTGGCAGCCCGCATAACCACAGT
AGGACGCTCCTCCCACACGAACTCCTCCATGACCCCATCTGCAGCGGTGG
GGGTCGGGAGGGCCCATCCACGTACACCTCGAGGGTCGCGCATCATCTCC
CTTTGCGACGATTTCGCGGAACATGCAGAGGTCAGCGTGCAAGCACCCCC
GCGAACCCAGCATCGCCTGAAGGCCATGGGCTCTGCGCCCCGGCAGCAGC
GGCCTTGTAG
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