mRNA_F-serratus_M_contig719.18404.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig719.18404.1
Unique NamemRNA_F-serratus_M_contig719.18404.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig719.18404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig719contigF-serratus_M_contig719:343360..343688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_001870.1
Exons1
Model size329
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932197.454242-UTR-F-serratus_M_contig719:343359..3433761622932197.454242-UTR-F-serratus_M_contig719:343359..343376Fucus serratus maleUTRF-serratus_M_contig719 343360..343376 +
1690964194.2862725-UTR-F-serratus_M_contig719:343359..3433761690964194.2862725-UTR-F-serratus_M_contig719:343359..343376Fucus serratus maleUTRF-serratus_M_contig719 343360..343376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932197.4730604-CDS-F-serratus_M_contig719:343376..3436881622932197.4730604-CDS-F-serratus_M_contig719:343376..343688Fucus serratus maleCDSF-serratus_M_contig719 343377..343688 +
1690964194.295764-CDS-F-serratus_M_contig719:343376..3436881690964194.295764-CDS-F-serratus_M_contig719:343376..343688Fucus serratus maleCDSF-serratus_M_contig719 343377..343688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig719.18404.1prot_F-serratus_M_contig719.18404.1Fucus serratus malepolypeptideF-serratus_M_contig719 343377..343688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig719.18404.1

>prot_F-serratus_M_contig719.18404.1 ID=prot_F-serratus_M_contig719.18404.1|Name=mRNA_F-serratus_M_contig719.18404.1|organism=Fucus serratus male|type=polypeptide|length=104bp
MMTSAVVAAVLLLLRLAPWALFMIILAGQQAISTSDGAFLNTRITSSAFV
HQAGGDDDDGLHEFTFHVAWESANNGSRPFDEEGGRGQGLAEIWLMTARQ
PDPS
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mRNA from alignment at F-serratus_M_contig719:343360..343688+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig719.18404.1 ID=mRNA_F-serratus_M_contig719.18404.1|Name=mRNA_F-serratus_M_contig719.18404.1|organism=Fucus serratus male|type=mRNA|length=329bp|location=Sequence derived from alignment at F-serratus_M_contig719:343360..343688+ (Fucus serratus male)
GAGCTGTCTGAGAAGGCATGATGACTTCTGCAGTAGTAGCAGCAGTATTA
TTATTATTGCGATTGGCGCCTTGGGCCCTGTTTATGATTATACTGGCGGG
ACAGCAAGCGATTTCCACGTCGGACGGAGCCTTTCTGAACACGCGCATCA
CATCTTCTGCCTTCGTTCATCAAGCTGGTGGTGATGATGATGATGGGCTG
CACGAATTCACCTTCCATGTGGCGTGGGAAAGTGCAAACAACGGAAGCCG
TCCCTTTGATGAGGAGGGTGGTCGGGGTCAGGGCCTGGCTGAAATCTGGC
TGATGACTGCGAGGCAGCCTGATCCCTCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig719:343360..343688+

>mRNA_F-serratus_M_contig719.18404.1 ID=mRNA_F-serratus_M_contig719.18404.1|Name=mRNA_F-serratus_M_contig719.18404.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig719:343360..343688+ (Fucus serratus male)
ATGATGACTTCTGCAGTAGTAGCAGCAGTATTATTATTATTGCGATTGGC
GCCTTGGGCCCTGTTTATGATTATACTGGCGGGACAGCAAGCGATTTCCA
CGTCGGACGGAGCCTTTCTGAACACGCGCATCACATCTTCTGCCTTCGTT
CATCAAGCTGGTGGTGATGATGATGATGGGCTGCACGAATTCACCTTCCA
TGTGGCGTGGGAAAGTGCAAACAACGGAAGCCGTCCCTTTGATGAGGAGG
GTGGTCGGGGTCAGGGCCTGGCTGAAATCTGGCTGATGACTGCGAGGCAG
CCTGATCCCTCGATGATGACTTCTGCAGTAGTAGCAGCAGTATTATTATT
ATTGCGATTGGCGCCTTGGGCCCTGTTTATGATTATACTGGCGGGACAGC
AAGCGATTTCCACGTCGGACGGAGCCTTTCTGAACACGCGCATCACATCT
TCTGCCTTCGTTCATCAAGCTGGTGGTGATGATGATGATGGGCTGCACGA
ATTCACCTTCCATGTGGCGTGGGAAAGTGCAAACAACGGAAGCCGTCCCT
TTGATGAGGAGGGTGGTCGGGGTCAGGGCCTGGCTGAAATCTGGCTGATG
ACTGCGAGGCAGCCTGATCCCTCG
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