mRNA_F-serratus_M_contig719.18397.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig719.18397.1
Unique NamemRNA_F-serratus_M_contig719.18397.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig719.18397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig719contigF-serratus_M_contig719:218622..222778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size803
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig719.18397.1prot_F-serratus_M_contig719.18397.1Fucus serratus malepolypeptideF-serratus_M_contig719 222248..222664 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932197.2366836-UTR-F-serratus_M_contig719:218621..2188521622932197.2366836-UTR-F-serratus_M_contig719:218621..218852Fucus serratus maleUTRF-serratus_M_contig719 218622..218852 +
1690964194.2089367-UTR-F-serratus_M_contig719:218621..2188521690964194.2089367-UTR-F-serratus_M_contig719:218621..218852Fucus serratus maleUTRF-serratus_M_contig719 218622..218852 +
1622932197.2589757-UTR-F-serratus_M_contig719:222206..2222471622932197.2589757-UTR-F-serratus_M_contig719:222206..222247Fucus serratus maleUTRF-serratus_M_contig719 222207..222247 +
1690964194.2202964-UTR-F-serratus_M_contig719:222206..2222471690964194.2202964-UTR-F-serratus_M_contig719:222206..222247Fucus serratus maleUTRF-serratus_M_contig719 222207..222247 +
1622932197.305936-UTR-F-serratus_M_contig719:222664..2227781622932197.305936-UTR-F-serratus_M_contig719:222664..222778Fucus serratus maleUTRF-serratus_M_contig719 222665..222778 +
1690964194.2485852-UTR-F-serratus_M_contig719:222664..2227781690964194.2485852-UTR-F-serratus_M_contig719:222664..222778Fucus serratus maleUTRF-serratus_M_contig719 222665..222778 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932197.2854545-CDS-F-serratus_M_contig719:222247..2226641622932197.2854545-CDS-F-serratus_M_contig719:222247..222664Fucus serratus maleCDSF-serratus_M_contig719 222248..222664 +
1690964194.2358828-CDS-F-serratus_M_contig719:222247..2226641690964194.2358828-CDS-F-serratus_M_contig719:222247..222664Fucus serratus maleCDSF-serratus_M_contig719 222248..222664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig719.18397.1

>prot_F-serratus_M_contig719.18397.1 ID=prot_F-serratus_M_contig719.18397.1|Name=mRNA_F-serratus_M_contig719.18397.1|organism=Fucus serratus male|type=polypeptide|length=139bp
MPLAVRTPTTISKTRSPRPGRPLSAPALRGDRPSRLPASPLPPRNRSAKS
LGIHARTKVAIRPQSAGSCRTHERERGIGFRQWGRNDEWDRQERDRWGAK
NEGAGVQKSLRGLQSRIAKVTYLFLLPTGLAGLVKGWE*
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mRNA from alignment at F-serratus_M_contig719:218622..222778+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig719.18397.1 ID=mRNA_F-serratus_M_contig719.18397.1|Name=mRNA_F-serratus_M_contig719.18397.1|organism=Fucus serratus male|type=mRNA|length=4157bp|location=Sequence derived from alignment at F-serratus_M_contig719:218622..222778+ (Fucus serratus male)
ATTTCCCCTCAATCTAGGCGTTGATCACGACCTTGCTAGCGTTGCTACGT
AGCCTGATATGCCACTAAGCTGAAGGGGTTGTCAGGAGGACACCAGGCTT
CTCTCGCAAGATCCAGGCAAAGATTACTCGGAACGAGTGGGGCTAGCGGA
GACAACGTACCCAGTCGGGGGCTCTCTTTGAAGGGGAGGGAGTTGGCCGT
GTTCGGGATCGATTGCTACAACAGAGAACAGGTGCGAAGTTGGATGAAAG
AATAATCCTCAAGTTCGATGCGGTAGGAATCGACCGCTTGTATCGAGAGG
CTCGGGGAGCGTAGAACGTGTGCCTTCAAAAGCATGGACAGGGTCCGGCG
ATGGTGTTTGATACGAATTTGAAGTGTTGTCGAAGGTGACTATTGCAACT
TTGGAGATTAGCAGTGATGTGTGGCTGTCGTCACGTCCAGATAGAAGGAC
AAAATGGTCCGACTTTTTGCTAAATAAACCTCGATATTTATATTTACTCC
TGTCTGATGAAGATTGAAGTGTCTATGAACATTTGGGCTATGCTACCAGA
GTGCCTCCACAGATCTCAACGCATGGCAATCGTAATAATTGATGTCCATC
GCACACGCCCTAAAACGCTCAACTATAAGCATTTGTTTCCGCCTTCTTCT
AGGGTGCAGTTCGGTTACTCCCAAATGGAAGCTTTTCCAACCATCCCCTT
TTGCTAACGCCGTTACTTTCAACATGCCCACTTCATACCAATAGTGGGGG
TGGGAAAGAGAGGCGAATATTAATTGGTCCATAGTGACCTGCTAAAGGCA
GCACTCGTTCGGAACTTCCTTGAGGTTTACTGGCCCTATGCCGGTGGACT
CTCGGCAGTGAACGCCATCGGTACGCAATTGCGTGACCCGATGAACTCGG
GATTGACCCGATGGCGTATGGCGGTTTCATAAATGGACGCTGCCGCGGAA
CTCGGGAGCAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGA
TGAGTAGGCTGACGCGGGACGGGACGGCTGAACCCGTCTCGCGAGACCAA
ATTCTCAGGCACGCACGGGGACAGGGGAATATTATTTTCCTTGTTCAGCT
GACCACGAGCAGGATTGGCAACCTTACCCGGTTGATCCATACTGTGATAA
GTTAACTGTTTCACCACAGGGTAAAAGTCAATTGACGATTACGTATCGGT
AATCAGTCCTTATAACACTCTCCACCCACAGAATTTGACTATCCGGCGAT
CAAGGGATCTATCCGGAGATCAAGCGGGACTAGTTAAATTCGATAAGGTT
TTGAGTGGAGGGGCATGCGTAGGTAAAAGCAATTAGCTAAGGGGGATTCG
AACCCGGGTCCCAGTCGACGCCAGTGTGATAAGGTAACTCTTTCACCACA
GGGTAAAAGTCAATTGACGATTACGTATCGGTAATCAGTCCTTATAACAA
TACTCTGCTATATGTGATGACCATACATACATACATACATACATTGCTGC
CATTTCTGGTCCTAGTTTGTCGTACGATGCAACAAGACTTGCGAAATCGC
CTTTCCGTGCGATTGCTCACACGAAGACTTGGCCCTTGAGGAAGAGTAAG
AAAAACGATTTCCGTGCGTGTAGCCTTGGATTCTCGCAGTGGTATTTACA
AATGGTTCGTGCGCACTCCGCACGTCTTTCAGCGGTTTCAACTGAACGAT
AATCCGCGTCCATCTTTTTCACCCGAGGCGATCTACTCTGCTCCTATCAT
TCTTGAACGTCCTGAGTTGAAATTTGCAGCAACAATCGATCCCATTTAGA
GGTTTTGTGTTGGCAACCGATGTCCCCTTGAAGGTTTGGATGCTTGGAAG
GCTTGGAGGCGTTCAGATTTTCCATAAGCAAAAAAAAAAACACGAAGGGT
CGTACGTTATGTATAATAAGTAATAATGTAGTCGGACATTAACCACCTAT
GGTACTAAGTAGACCATCCTTACAGTCTAGGGGTCCAAAGCCCCCTCCCC
GCCCTCATTTTCTTTCACACTGAGATAGTTATTTTCCTTGGTCTTCCGTG
CCAAGGTCAACTGCCCCCCCCCTCCCCGAGATTTATATACTTCGTCGGTC
AATGCTCTTTTCCGCGAGATTGATTTCCTCGCACGGCTGGAACTCGAATC
CTCGACCGGAAATCTTTCATTCGGAAATTTATTGACTTATTTTTATGTGC
GGGTGATTTCTGACTATTAATACCATGAACTCCCAACTGTAAATGTTTTT
AATCATGTGCTCTTCCTTTCTTGAGGCAGTATCATGTTTTGTGATTATAC
AGAACAAGATTGCTGCACTAACGACTGACTGCTCGTCGAAGGTAAGCCGC
AACACGATCGGTAGCTGGAAGCCGCGGTCTTCCCGGACTTAAGAATTCCT
CCCTTCGTTTACTTTCACCGCGCGCAAGGCGATCGGGAACCTCCGTCAGC
TAGACTGATAAGCCCCCGCGCTGTACCAAAAGATAGCTTATTAGCAGAGT
CGATAGTTTCTGATTTTACGGAGTGGCCAAAGAAGGGGCCTCCAAAGAAA
GGAGACATGACAGTAAAAAGTAACATATGCCGGACCCATCGTGCTGGAAA
GACGCGATGCGGGGGTCGAGCACGAGATAACTCGAGATGCGACTACTATA
ACGCTAACGAACGGCGCACTAAGATGGCCGTAAAGGGCCGGGACGACAAT
CGTGTTATTACTTTCAATCCGCATAAGTACACCGGAGTATCGCTGCTGCC
GCAGACGTCCGAGGATAAAACAGACTCTTCTACCCGATCGTTGCTGCACG
AGGAGCTTCACGCGCCAAGTTTAAGCAGCCTCTTCACACGCCACGTTACC
TCGGCTCCTTCAGCTCGTCAATAAGCTGTAGTCGTCCTTATTGATGCGCT
CCGTCTGCAAGCATTGTGCAATCGAAGCTTGTCGTACGTGCCTTGTAGCG
TTACTTCTTCGAGCTATCGAATGCTGTGTAAGGAAGCGACGGAGAGGGTC
TGTAAGTTTCTCGCTGCTGCTACTGGTGGTTTCTTCAATGCCAAAATGTT
TTGGTCGTGACTGCGACTTCGACTTGGTATACCGGCATGCCTCCCAACAA
TTTATGATTGCACGAAATGATACCAATTATTGTCCAGCGCTTAAGTACTT
ACTTGTACGTGTGTTGGTTAAAACATCCAATGTTCATAGTTTTTCGCTAC
AGTAAATTTGCTGTAGACTTTTTGTCACATTGTGCCCGCCCAGATATTGG
TGACAATTTTGTCGGTCGTGCCGAGGAAGAGACCTTGTGTGACGATCGAC
CCTGGGTTACTCTCCGACCCCGCATGGATTAATGTATCTCCTACGTGGGG
TAGAAATTGCTGGAGTCATAAGAACGACACCGACTTCTTAACACCGCAGT
TGTCTTGAGGCAATCAATCAATACTTGATATACTCAACAATGTACTTAGA
GGTTGGCAAGAAAAGAAAAGAAAAACAAGAGTGTCGATACGATGTGTAAC
CACAAACCACCCACCGCGGTGGCCAACCTTCCGCGACTTTGATTTTCTCG
ATATTGGCTATCGTGAATGCTAAAAATGGTGGCAGGCACTCAGGATAGAG
CAAAAGGCGGAACTCGCGTAGGATCCATGCCACTGGCCGTGCGGACCCCG
ACAACAATCTCCAAAACGCGCAGCCCAAGGCCGGGGCGACCGCTCTCCGC
TCCAGCTCTTCGAGGGGACAGGCCATCGCGCCTTCCTGCTTCACCGCTCC
CACCTCGGAACAGAAGCGCAAAATCTTTAGGTATCCACGCAAGAACAAAG
GTGGCCATTCGGCCGCAATCAGCCGGAAGTTGTCGCACACACGAAAGGGA
AAGGGGGATAGGGTTTCGGCAATGGGGGCGAAACGATGAGTGGGACAGGC
AGGAGCGAGACCGGTGGGGAGCAAAGAACGAAGGCGCTGGAGTACAAAAG
AGCTTGCGAGGCTTGCAATCCCGTATAGCGAAGGTGACTTATTTATTTTT
ACTCCCGACGGGTTTAGCAGGCTTGGTGAAAGGGTGGGAGTAGGCGACGT
AATTTGACGTGTAGAAGGCTCTAACGTTCACGAGCTGTCGAGGTACATGC
TGGAAGGTGACGATAGTGGTATCCGGAGTAGGCACGGCAGTCACAGTGCG
AGATAGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig719:218622..222778+

>mRNA_F-serratus_M_contig719.18397.1 ID=mRNA_F-serratus_M_contig719.18397.1|Name=mRNA_F-serratus_M_contig719.18397.1|organism=Fucus serratus male|type=CDS|length=834bp|location=Sequence derived from alignment at F-serratus_M_contig719:218622..222778+ (Fucus serratus male)
ATGCCACTGGCCGTGCGGACCCCGACAACAATCTCCAAAACGCGCAGCCC
AAGGCCGGGGCGACCGCTCTCCGCTCCAGCTCTTCGAGGGGACAGGCCAT
CGCGCCTTCCTGCTTCACCGCTCCCACCTCGGAACAGAAGCGCAAAATCT
TTAGGTATCCACGCAAGAACAAAGGTGGCCATTCGGCCGCAATCAGCCGG
AAGTTGTCGCACACACGAAAGGGAAAGGGGGATAGGGTTTCGGCAATGGG
GGCGAAACGATGAGTGGGACAGGCAGGAGCGAGACCGGTGGGGAGCAAAG
AACGAAGGCGCTGGAGTACAAAAGAGCTTGCGAGGCTTGCAATCCCGTAT
AGCGAAGGTGACTTATTTATTTTTACTCCCGACGGGTTTAGCAGGCTTGG
TGAAAGGGTGGGAGTAGATGCCACTGGCCGTGCGGACCCCGACAACAATC
TCCAAAACGCGCAGCCCAAGGCCGGGGCGACCGCTCTCCGCTCCAGCTCT
TCGAGGGGACAGGCCATCGCGCCTTCCTGCTTCACCGCTCCCACCTCGGA
ACAGAAGCGCAAAATCTTTAGGTATCCACGCAAGAACAAAGGTGGCCATT
CGGCCGCAATCAGCCGGAAGTTGTCGCACACACGAAAGGGAAAGGGGGAT
AGGGTTTCGGCAATGGGGGCGAAACGATGAGTGGGACAGGCAGGAGCGAG
ACCGGTGGGGAGCAAAGAACGAAGGCGCTGGAGTACAAAAGAGCTTGCGA
GGCTTGCAATCCCGTATAGCGAAGGTGACTTATTTATTTTTACTCCCGAC
GGGTTTAGCAGGCTTGGTGAAAGGGTGGGAGTAG
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