mRNA_F-serratus_M_contig719.18394.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig719.18394.1
Unique NamemRNA_F-serratus_M_contig719.18394.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig719.18394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig719contigF-serratus_M_contig719:208657..209421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size602
Cds size600
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932196.722048-CDS-F-serratus_M_contig719:208656..2091751622932196.722048-CDS-F-serratus_M_contig719:208656..209175Fucus serratus maleCDSF-serratus_M_contig719 208657..209175 +
1690964194.0490258-CDS-F-serratus_M_contig719:208656..2091751690964194.0490258-CDS-F-serratus_M_contig719:208656..209175Fucus serratus maleCDSF-serratus_M_contig719 208657..209175 +
1622932196.743095-CDS-F-serratus_M_contig719:209338..2094191622932196.743095-CDS-F-serratus_M_contig719:209338..209419Fucus serratus maleCDSF-serratus_M_contig719 209339..209419 +
1690964194.060592-CDS-F-serratus_M_contig719:209338..2094191690964194.060592-CDS-F-serratus_M_contig719:209338..209419Fucus serratus maleCDSF-serratus_M_contig719 209339..209419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig719.18394.1prot_F-serratus_M_contig719.18394.1Fucus serratus malepolypeptideF-serratus_M_contig719 208657..209419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig719.18394.1

>prot_F-serratus_M_contig719.18394.1 ID=prot_F-serratus_M_contig719.18394.1|Name=mRNA_F-serratus_M_contig719.18394.1|organism=Fucus serratus male|type=polypeptide|length=200bp
KSHAEVVANEGERERPFLAEIITSYQDQARPPLDNYGKEGKNNRHLSFAA
KSPEWQYSKDTHGSCLIAVLRSLTEVVAANIMCSRTVELSNTREENAVGL
NAAAGMETEVMGFLPTMAERGTSEDGNDRDNQRKGILDNALKLLRELVDN
EVKGNLGKLAKHDIGGECKDFVWDVIVAVLSDSWSDIRRMGADHARHLVA
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mRNA from alignment at F-serratus_M_contig719:208657..209421+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig719.18394.1 ID=mRNA_F-serratus_M_contig719.18394.1|Name=mRNA_F-serratus_M_contig719.18394.1|organism=Fucus serratus male|type=mRNA|length=765bp|location=Sequence derived from alignment at F-serratus_M_contig719:208657..209421+ (Fucus serratus male)
AAATCCCATGCAGAGGTGGTCGCTAACGAGGGAGAAAGAGAGCGTCCTTT
TTTGGCTGAGATAATTACCTCGTACCAGGATCAGGCTCGACCGCCATTGG
ACAACTATGGAAAGGAGGGCAAGAACAATCGTCATCTTTCTTTCGCCGCT
AAGTCGCCTGAATGGCAGTATAGCAAAGACACTCACGGAAGCTGTCTCAT
TGCGGTCCTTAGATCCTTGACAGAGGTGGTCGCCGCAAATATCATGTGCT
CAAGAACAGTAGAGTTGAGTAACACTCGGGAAGAAAACGCAGTGGGCCTG
AATGCCGCAGCGGGTATGGAGACAGAAGTGATGGGTTTCCTGCCGACGAT
GGCTGAACGTGGGACGAGCGAGGACGGCAACGACCGGGATAACCAGCGTA
AAGGTATACTCGACAATGCACTTAAACTTCTGAGGGAGCTCGTCGATAAT
GAAGTCAAGGGAAATCTTGGAAAGCTGGCAAAACACGATATCGGGGGCGA
ATGCAAGGATTTCGTATGGGTGAGACTTTAACTCAGAATATAACTAGTTA
ATCTGGCATCTCTCTGATATCGTGTCTTACCCATTTGATGTCGCCTCACT
TGCCGACTCTAGATTAGTAATCAGCCGTGCATAGATTTGCACCGTCTCGA
CCATTGCTATTTTGTTAAACCGTTCTCGACAGGACGTGATTGTTGCCGTC
CTCTCTGACAGCTGGTCCGACATACGTAGAATGGGGGCTGATCACGCAAG
GCACTTGGTGGCTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig719:208657..209421+

>mRNA_F-serratus_M_contig719.18394.1 ID=mRNA_F-serratus_M_contig719.18394.1|Name=mRNA_F-serratus_M_contig719.18394.1|organism=Fucus serratus male|type=CDS|length=1200bp|location=Sequence derived from alignment at F-serratus_M_contig719:208657..209421+ (Fucus serratus male)
AAATCCCATGCAGAGGTGGTCGCTAACGAGGGAGAAAGAGAGCGTCCTTT
TTTGGCTGAGATAATTACCTCGTACCAGGATCAGGCTCGACCGCCATTGG
ACAACTATGGAAAGGAGGGCAAGAACAATCGTCATCTTTCTTTCGCCGCT
AAGTCGCCTGAATGGCAGTATAGCAAAGACACTCACGGAAGCTGTCTCAT
TGCGGTCCTTAGATCCTTGACAGAGGTGGTCGCCGCAAATATCATGTGCT
CAAGAACAGTAGAGTTGAGTAACACTCGGGAAGAAAACGCAGTGGGCCTG
AATGCCGCAGCGGGTATGGAGACAGAAGTGATGGGTTTCCTGCCGACGAT
GGCTGAACGTGGGACGAGCGAGGACGGCAACGACCGGGATAACCAGCGTA
AAGGTATACTCGACAATGCACTTAAACTTCTGAGGGAGCTCGTCGATAAT
GAAGTCAAGGGAAATCTTGGAAAGCTGGCAAAACACGATATCGGGGGCGA
ATGCAAGGATTTCGTATGGAAATCCCATGCAGAGGTGGTCGCTAACGAGG
GAGAAAGAGAGCGTCCTTTTTTGGCTGAGATAATTACCTCGTACCAGGAT
CAGGCTCGACCGCCATTGGACAACTATGGAAAGGAGGGCAAGAACAATCG
TCATCTTTCTTTCGCCGCTAAGTCGCCTGAATGGCAGTATAGCAAAGACA
CTCACGGAAGCTGTCTCATTGCGGTCCTTAGATCCTTGACAGAGGTGGTC
GCCGCAAATATCATGTGCTCAAGAACAGTAGAGTTGAGTAACACTCGGGA
AGAAAACGCAGTGGGCCTGAATGCCGCAGCGGGTATGGAGACAGAAGTGA
TGGGTTTCCTGCCGACGATGGCTGAACGTGGGACGAGCGAGGACGGCAAC
GACCGGGATAACCAGCGTAAAGGTATACTCGACAATGCACTTAAACTTCT
GAGGGAGCTCGTCGATAATGAAGTCAAGGGAAATCTTGGAAAGCTGGCAA
AACACGATATCGGGGGCGAATGCAAGGATTTCGTATGGGACGTGATTGTT
GCCGTCCTCTCTGACAGCTGGTCCGACATACGTAGAATGGGGGCTGATCA
CGCAAGGCACTTGGTGGCTGACGTGATTGTTGCCGTCCTCTCTGACAGCT
GGTCCGACATACGTAGAATGGGGGCTGATCACGCAAGGCACTTGGTGGCT
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