mRNA_F-serratus_M_contig719.18391.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig719.18391.1
Unique NamemRNA_F-serratus_M_contig719.18391.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig719.18391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig719contigF-serratus_M_contig719:88651..91094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2444
Cds size1299
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig719.18391.1prot_F-serratus_M_contig719.18391.1Fucus serratus malepolypeptideF-serratus_M_contig719 88784..90082 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932197.0453017-UTR-F-serratus_M_contig719:88650..887831622932197.0453017-UTR-F-serratus_M_contig719:88650..88783Fucus serratus maleUTRF-serratus_M_contig719 88651..88783 +
1690964194.148397-UTR-F-serratus_M_contig719:88650..887831690964194.148397-UTR-F-serratus_M_contig719:88650..88783Fucus serratus maleUTRF-serratus_M_contig719 88651..88783 +
1622932197.0864372-UTR-F-serratus_M_contig719:90082..910941622932197.0864372-UTR-F-serratus_M_contig719:90082..91094Fucus serratus maleUTRF-serratus_M_contig719 90083..91094 +
1690964194.1712837-UTR-F-serratus_M_contig719:90082..910941690964194.1712837-UTR-F-serratus_M_contig719:90082..91094Fucus serratus maleUTRF-serratus_M_contig719 90083..91094 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932197.0672395-CDS-F-serratus_M_contig719:88783..900821622932197.0672395-CDS-F-serratus_M_contig719:88783..90082Fucus serratus maleCDSF-serratus_M_contig719 88784..90082 +
1690964194.1583405-CDS-F-serratus_M_contig719:88783..900821690964194.1583405-CDS-F-serratus_M_contig719:88783..90082Fucus serratus maleCDSF-serratus_M_contig719 88784..90082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig719.18391.1

>prot_F-serratus_M_contig719.18391.1 ID=prot_F-serratus_M_contig719.18391.1|Name=mRNA_F-serratus_M_contig719.18391.1|organism=Fucus serratus male|type=polypeptide|length=433bp
MSSIEGFGVKRASSEQSSIGMAGVGALYLHRHRRATVGPGSAASWNRLTI
SDSGCSETTGYSVGSQEIFSPLSRLRGRTAFMTALPPHTEESRNVDPSSG
LGATPESAAGRRMVRVTRKYKSLSPRSFGKNSSIDAESEADQHNAGESLT
SAATSFPSGHLNQSYKYRSFNPKRGFPHKRFLGATASIAGGPQDTNGDGT
QATQGFVGQHRSLSFTEHDVNQIVTTATREPLLKNKKSRRQIHRGAIVIT
PNSITSEVGASTFYAGAPTQDSPQNSTDKKATKAAADSVADRRPIMRAKT
WAVDTGSPVGASGITQAHPFSGRASCNPSGEDNVESPWASEKTGTSLVPD
ATLRFNRVPKGGRERAGSEGGVGTRQLPTVIKLRPSKETPTYDCEGVGLP
SDGMEKAGRRAAVKQGWERRFPSSQDSFDTPK*
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mRNA from alignment at F-serratus_M_contig719:88651..91094+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig719.18391.1 ID=mRNA_F-serratus_M_contig719.18391.1|Name=mRNA_F-serratus_M_contig719.18391.1|organism=Fucus serratus male|type=mRNA|length=2444bp|location=Sequence derived from alignment at F-serratus_M_contig719:88651..91094+ (Fucus serratus male)
CGCTACCTTCGGTCACATATTTGACGGGCGCAAACGCCGTGATGCTGCTG
CTGCTTGTGATAGTTCTGCTGTGTTCAGCCGTGATGATGAAGTGAACTCC
AGGGGCAGCAGCTCAAATTCTTCACCCAGGGCTATGTCGTCAATCGAAGG
CTTCGGTGTCAAGCGCGCTTCGTCAGAGCAGTCGTCCATTGGCATGGCCG
GGGTTGGAGCTCTCTATCTCCACCGTCACCGCCGCGCCACCGTTGGCCCT
GGTAGTGCCGCCAGTTGGAACCGATTGACCATCAGTGACTCGGGATGCAG
CGAGACAACGGGATATTCGGTTGGATCTCAGGAAATATTCTCGCCGCTGA
GCCGCTTGCGCGGGCGGACTGCCTTTATGACGGCGCTTCCTCCACACACC
GAGGAATCGCGCAACGTTGACCCGTCGAGTGGGTTGGGCGCCACCCCAGA
GTCTGCCGCGGGTAGGCGCATGGTAAGGGTGACGAGAAAGTATAAGTCTC
TGAGTCCAAGGTCCTTCGGCAAGAACAGCTCTATAGACGCGGAGAGTGAA
GCTGATCAACATAACGCTGGGGAAAGTTTGACCAGCGCAGCCACGAGTTT
CCCCTCGGGGCATCTCAATCAGTCATACAAATACCGTTCGTTCAACCCCA
AGAGAGGGTTCCCTCATAAGAGATTCTTAGGGGCAACAGCGTCGATCGCT
GGTGGACCACAAGATACCAACGGCGACGGCACTCAGGCAACGCAAGGATT
TGTTGGACAGCATCGAAGCCTGAGCTTTACCGAGCACGACGTAAACCAGA
TCGTCACGACTGCGACAAGAGAGCCACTGCTGAAAAACAAAAAGTCGAGG
CGGCAGATCCATCGCGGTGCTATTGTCATCACCCCAAACTCAATAACAAG
CGAGGTTGGCGCCTCCACGTTTTACGCTGGAGCTCCGACACAGGATTCAC
CGCAAAATTCAACAGATAAGAAGGCGACGAAAGCCGCCGCCGATTCTGTC
GCCGATCGGCGCCCTATTATGCGTGCAAAAACCTGGGCCGTGGACACGGG
TTCACCAGTGGGCGCTAGTGGTATCACCCAGGCGCATCCTTTCTCAGGGA
GAGCAAGTTGCAATCCTAGCGGAGAGGATAACGTGGAGAGTCCGTGGGCG
AGTGAGAAAACCGGCACATCCCTCGTCCCGGACGCTACTCTAAGGTTCAA
TCGGGTGCCCAAGGGAGGACGAGAGAGAGCGGGGTCGGAGGGGGGAGTGG
GTACACGGCAGCTGCCCACAGTGATAAAATTGCGACCGTCGAAAGAAACC
CCCACCTACGATTGCGAAGGGGTTGGCTTACCCTCGGATGGAATGGAAAA
AGCGGGACGGCGTGCTGCAGTGAAGCAAGGCTGGGAAAGGCGGTTCCCGT
CTAGCCAAGATTCCTTCGACACCCCTAAATAAGCCTCGTTGGCACTACTG
TACTAGTTTGCTGAGCTCGGAGAAGCCACGAGTTTCGATATGCCGTCCGT
CTCGGCTGCTTCTTGATATGCTTTAGTTTGATTGATTTTGGAGTTTGTGG
TTCGTTCGGGCAGACTGATAATATTCTCGTTTATATTTCACAGGCATTCA
TAAACCGGGGTAGGACATGGGCGAACCTCGGGGGTTGCACTGATCGATGT
CTGCTTTCTTTTGCTTGTTGTTTTCCCTCGCGCTTTATATCGTAATCCAG
TGGCTCTAAACTGTACCAGTATACTTATATCGTTGGAATGCACGGCGGAC
AGATGGGCATCTGACTCATCGTGTAATGAACAGTAAATGGATTTGTTGCT
CACTTCGAACATATTAGTCTATACCTATAATGATGAAAGACTGTATATAA
GCTCCGGACTCTGAACACGTACGGTCGTCCTTTCCCGCTTGCTGTGCCGC
GGCCTTTGACTTTGTATTAATGGTATGTTTCAGAGATGGCATTATATTAA
TGGTATGTTTCGCAGAGCTAGGCTCGGCCTTTGACTTTGTTTGGAAACCA
CTTGTAGAAGCAAGTAAGCACCTGTTATGTTCTCATGGCCTGAAATAAAA
TGGGGAAATTTCACGAAATTGTTGGTCGTGGTACACAGCTTGGGGGTAGA
AAAAAAGGTGTTGAGTGACCATGATAGATGATCGTATATGTACTTGTATC
AGATTGGGGTGCTATTGTACGCCAAATCGTTAGGGATCAGTTGACCTCCT
AGTTGCCCCATGCTCTTGAATTTTGGGAGCACAAACAGCTGGTGTGCCTT
ACTTGGAACCGGTAAAAGTGGTACACAGATCATAGCTTATACATGCGGCA
GCATCACGCCAATTACACCAAACCGGCACATATCAAACCAACGAGCATTG
CATCGCGTGAGGCGTGGGAGGGCTATTGCGAGAAAAACTTGACCGATTGG
TTCTGTAGGTGCTGGAAGTCGGAAGCTGTGACTTGAGTTATCCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig719:88651..91094+

>mRNA_F-serratus_M_contig719.18391.1 ID=mRNA_F-serratus_M_contig719.18391.1|Name=mRNA_F-serratus_M_contig719.18391.1|organism=Fucus serratus male|type=CDS|length=2598bp|location=Sequence derived from alignment at F-serratus_M_contig719:88651..91094+ (Fucus serratus male)
ATGTCGTCAATCGAAGGCTTCGGTGTCAAGCGCGCTTCGTCAGAGCAGTC
GTCCATTGGCATGGCCGGGGTTGGAGCTCTCTATCTCCACCGTCACCGCC
GCGCCACCGTTGGCCCTGGTAGTGCCGCCAGTTGGAACCGATTGACCATC
AGTGACTCGGGATGCAGCGAGACAACGGGATATTCGGTTGGATCTCAGGA
AATATTCTCGCCGCTGAGCCGCTTGCGCGGGCGGACTGCCTTTATGACGG
CGCTTCCTCCACACACCGAGGAATCGCGCAACGTTGACCCGTCGAGTGGG
TTGGGCGCCACCCCAGAGTCTGCCGCGGGTAGGCGCATGGTAAGGGTGAC
GAGAAAGTATAAGTCTCTGAGTCCAAGGTCCTTCGGCAAGAACAGCTCTA
TAGACGCGGAGAGTGAAGCTGATCAACATAACGCTGGGGAAAGTTTGACC
AGCGCAGCCACGAGTTTCCCCTCGGGGCATCTCAATCAGTCATACAAATA
CCGTTCGTTCAACCCCAAGAGAGGGTTCCCTCATAAGAGATTCTTAGGGG
CAACAGCGTCGATCGCTGGTGGACCACAAGATACCAACGGCGACGGCACT
CAGGCAACGCAAGGATTTGTTGGACAGCATCGAAGCCTGAGCTTTACCGA
GCACGACGTAAACCAGATCGTCACGACTGCGACAAGAGAGCCACTGCTGA
AAAACAAAAAGTCGAGGCGGCAGATCCATCGCGGTGCTATTGTCATCACC
CCAAACTCAATAACAAGCGAGGTTGGCGCCTCCACGTTTTACGCTGGAGC
TCCGACACAGGATTCACCGCAAAATTCAACAGATAAGAAGGCGACGAAAG
CCGCCGCCGATTCTGTCGCCGATCGGCGCCCTATTATGCGTGCAAAAACC
TGGGCCGTGGACACGGGTTCACCAGTGGGCGCTAGTGGTATCACCCAGGC
GCATCCTTTCTCAGGGAGAGCAAGTTGCAATCCTAGCGGAGAGGATAACG
TGGAGAGTCCGTGGGCGAGTGAGAAAACCGGCACATCCCTCGTCCCGGAC
GCTACTCTAAGGTTCAATCGGGTGCCCAAGGGAGGACGAGAGAGAGCGGG
GTCGGAGGGGGGAGTGGGTACACGGCAGCTGCCCACAGTGATAAAATTGC
GACCGTCGAAAGAAACCCCCACCTACGATTGCGAAGGGGTTGGCTTACCC
TCGGATGGAATGGAAAAAGCGGGACGGCGTGCTGCAGTGAAGCAAGGCTG
GGAAAGGCGGTTCCCGTCTAGCCAAGATTCCTTCGACACCCCTAAATAAA
TGTCGTCAATCGAAGGCTTCGGTGTCAAGCGCGCTTCGTCAGAGCAGTCG
TCCATTGGCATGGCCGGGGTTGGAGCTCTCTATCTCCACCGTCACCGCCG
CGCCACCGTTGGCCCTGGTAGTGCCGCCAGTTGGAACCGATTGACCATCA
GTGACTCGGGATGCAGCGAGACAACGGGATATTCGGTTGGATCTCAGGAA
ATATTCTCGCCGCTGAGCCGCTTGCGCGGGCGGACTGCCTTTATGACGGC
GCTTCCTCCACACACCGAGGAATCGCGCAACGTTGACCCGTCGAGTGGGT
TGGGCGCCACCCCAGAGTCTGCCGCGGGTAGGCGCATGGTAAGGGTGACG
AGAAAGTATAAGTCTCTGAGTCCAAGGTCCTTCGGCAAGAACAGCTCTAT
AGACGCGGAGAGTGAAGCTGATCAACATAACGCTGGGGAAAGTTTGACCA
GCGCAGCCACGAGTTTCCCCTCGGGGCATCTCAATCAGTCATACAAATAC
CGTTCGTTCAACCCCAAGAGAGGGTTCCCTCATAAGAGATTCTTAGGGGC
AACAGCGTCGATCGCTGGTGGACCACAAGATACCAACGGCGACGGCACTC
AGGCAACGCAAGGATTTGTTGGACAGCATCGAAGCCTGAGCTTTACCGAG
CACGACGTAAACCAGATCGTCACGACTGCGACAAGAGAGCCACTGCTGAA
AAACAAAAAGTCGAGGCGGCAGATCCATCGCGGTGCTATTGTCATCACCC
CAAACTCAATAACAAGCGAGGTTGGCGCCTCCACGTTTTACGCTGGAGCT
CCGACACAGGATTCACCGCAAAATTCAACAGATAAGAAGGCGACGAAAGC
CGCCGCCGATTCTGTCGCCGATCGGCGCCCTATTATGCGTGCAAAAACCT
GGGCCGTGGACACGGGTTCACCAGTGGGCGCTAGTGGTATCACCCAGGCG
CATCCTTTCTCAGGGAGAGCAAGTTGCAATCCTAGCGGAGAGGATAACGT
GGAGAGTCCGTGGGCGAGTGAGAAAACCGGCACATCCCTCGTCCCGGACG
CTACTCTAAGGTTCAATCGGGTGCCCAAGGGAGGACGAGAGAGAGCGGGG
TCGGAGGGGGGAGTGGGTACACGGCAGCTGCCCACAGTGATAAAATTGCG
ACCGTCGAAAGAAACCCCCACCTACGATTGCGAAGGGGTTGGCTTACCCT
CGGATGGAATGGAAAAAGCGGGACGGCGTGCTGCAGTGAAGCAAGGCTGG
GAAAGGCGGTTCCCGTCTAGCCAAGATTCCTTCGACACCCCTAAATAA
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