mRNA_F-serratus_M_contig719.18389.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig719.18389.1
Unique NamemRNA_F-serratus_M_contig719.18389.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig719.18389.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 3.690e-48
Identity = 91/109 (83.49%), Postives = 100/109 (91.74%), Query Frame = 2
Query:    2 ECVRRIALTGFAVFIYPESSAQIAVVLLLAVIFMVMSEILCPFVRPVEMWLYRAGHYVVFASMYLALLLRVDVSSERTQSQEVFSGVLVIAHVTMILVVIAQGVFVFVG 328
            EC RRIALTGFAVFIYP+SSAQ+A+VLLLA +FMV+SEIL PF RPVEMWLYRAGHYVVFASMYLALLLRVDVS ER QSQEVFSGV+VIAHV M LVV+AQG+ +FVG
Sbjct:  929 ECFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERDQSQEVFSGVIVIAHVAMFLVVVAQGLLIFVG 1037          
BLAST of mRNA_F-serratus_M_contig719.18389.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 3.240e-47
Identity = 89/109 (81.65%), Postives = 99/109 (90.83%), Query Frame = 2
Query:    2 ECVRRIALTGFAVFIYPESSAQIAVVLLLAVIFMVMSEILCPFVRPVEMWLYRAGHYVVFASMYLALLLRVDVSSERTQSQEVFSGVLVIAHVTMILVVIAQGVFVFVG 328
            EC RRIALTGFAVFIYP+SSAQ+A+VLLLA +FMV+SEIL PF RPVEMWLYRAGHYVVFASMYLALLLRVDVS ER QSQEVFSGV+V+AHV M LVV+ QG+ +FVG
Sbjct:  910 ECFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERDQSQEVFSGVIVMAHVAMFLVVVVQGLLIFVG 1018          
BLAST of mRNA_F-serratus_M_contig719.18389.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 2.080e-46
Identity = 87/109 (79.82%), Postives = 97/109 (88.99%), Query Frame = 2
Query:    2 ECVRRIALTGFAVFIYPESSAQIAVVLLLAVIFMVMSEILCPFVRPVEMWLYRAGHYVVFASMYLALLLRVDVSSERTQSQEVFSGVLVIAHVTMILVVIAQGVFVFVG 328
            EC RRIALTGFAVFIYP+SSAQ+A+VLLLA++FMV+SE L PF RPVEMWLYR GHYVVFASMYLALLLRVDVS ER QSQEVFSGVLVIAH  M+LVV+ QG+ +F G
Sbjct:  923 ECFRRIALTGFAVFIYPDSSAQVAIVLLLAIVFMVVSEFLSPFARPVEMWLYRTGHYVVFASMYLALLLRVDVSDERNQSQEVFSGVLVIAHAAMLLVVVLQGLLIFAG 1031          
BLAST of mRNA_F-serratus_M_contig719.18389.1 vs. uniprot
Match: D7FTU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU0_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 3.640e-46
Identity = 85/109 (77.98%), Postives = 97/109 (88.99%), Query Frame = 2
Query:    2 ECVRRIALTGFAVFIYPESSAQIAVVLLLAVIFMVMSEILCPFVRPVEMWLYRAGHYVVFASMYLALLLRVDVSSERTQSQEVFSGVLVIAHVTMILVVIAQGVFVFVG 328
            EC RRIALTGFAVFIYP+SSAQIA+VLLLAV+FMV+SEIL PF RPVEMWLYRAGHYVVFASMYLALLLRVDVS E  QSQ VF+ V+V+AH  M+LVV+ QG+ +F+G
Sbjct:   58 ECFRRIALTGFAVFIYPDSSAQIAIVLLLAVVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDEGDQSQGVFAVVVVVAHACMVLVVLGQGLLIFMG 166          
BLAST of mRNA_F-serratus_M_contig719.18389.1 vs. uniprot
Match: A0A6H5L0E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E1_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 1.310e-45
Identity = 85/109 (77.98%), Postives = 96/109 (88.07%), Query Frame = 2
Query:    2 ECVRRIALTGFAVFIYPESSAQIAVVLLLAVIFMVMSEILCPFVRPVEMWLYRAGHYVVFASMYLALLLRVDVSSERTQSQEVFSGVLVIAHVTMILVVIAQGVFVFVG 328
            EC RRIALTGFAVFIYP+SSAQ+A+VLLLA++FMV+SE L PF RP+EMWLYR GHYVVFASMYLALLLRVDVS E  QSQEVFSGVLVIAH  M+LVV+ QG+ +F G
Sbjct:  168 ECFRRIALTGFAVFIYPDSSAQVAIVLLLAIVFMVVSEFLSPFARPIEMWLYRTGHYVVFASMYLALLLRVDVSDENNQSQEVFSGVLVIAHAAMLLVVVLQGLLIFAG 276          
BLAST of mRNA_F-serratus_M_contig719.18389.1 vs. uniprot
Match: D7G021_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G021_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 4.100e-31
Identity = 64/105 (60.95%), Postives = 83/105 (79.05%), Query Frame = 2
Query:    2 ECVRRIALTGFAVFIYPESSAQIAVVLLLAVIFMVMSEILCPFVRPVEMWLYRAGHYVVFASMYLALLLRVDVSSERTQSQEVFSGVLVIAHVTMILVVIAQGVF 316
            ECVRRIALTG  VFI P S+AQ+A++LLLA  F+V+SE+L PF +P+E WLY +G  V+FASMY ALLL+VDVS+E ++SQ  FS VL+++HV +   V AQGVF
Sbjct:  196 ECVRRIALTGLGVFINPNSAAQVAILLLLAFGFLVLSEVLDPFEKPIETWLYLSGSCVIFASMYAALLLKVDVSNENSESQTAFSAVLILSHVVLFTTVFAQGVF 300          
BLAST of mRNA_F-serratus_M_contig719.18389.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.540e-27
Identity = 59/104 (56.73%), Postives = 79/104 (75.96%), Query Frame = 2
Query:    2 ECVRRIALTGFAVFIYPESSAQIAVVLLLAVIFMVMSEILCPFVRPVEMWLYRAGHYVVFASMYLALLLRVDVSSERTQSQEVFSGVLVIAHVTMILVVIAQGV 313
            EC RRIALTG A F+ P+S+AQ+A+ ++LA IFM +S++L PF  P + WLYR G +++F SMYLALLL+VD S E +QSQ  F+ VL+ AHV M+LVV+ Q V
Sbjct:  957 ECGRRIALTGLAAFLLPDSAAQVAIEVVLAAIFMAVSDVLSPFADPFDGWLYRTGAWIIFFSMYLALLLKVDASDEDSQSQAAFAKVLIAAHVGMVLVVLVQAV 1060          
BLAST of mRNA_F-serratus_M_contig719.18389.1 vs. uniprot
Match: A0A6H5L4E3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E3_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.150e-27
Identity = 57/104 (54.81%), Postives = 76/104 (73.08%), Query Frame = 2
Query:    2 ECVRRIALTGFAVFIYPESSAQIAVVLLLAVIFMVMSEILCPFVRPVEMWLYRAGHYVVFASMYLALLLRVDVSSERTQSQEVFSGVLVIAHVTMILVVIAQGV 313
            EC RRI LTG A F+ P+S+AQ+A+ ++LA IFM +S++L PFV P   WLYR G +++F SMYLALLL+VDVS E  QSQ  F+ VL+ AH  M+ V++ Q V
Sbjct:  110 ECGRRIVLTGLAAFLLPKSAAQVAIEVVLAAIFMAVSDVLPPFVDPFGAWLYRIGGWIIFFSMYLALLLKVDVSDEDNQSQAAFAKVLIAAHAGMVAVIVGQAV 213          
BLAST of mRNA_F-serratus_M_contig719.18389.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 3.230e-26
Identity = 56/104 (53.85%), Postives = 79/104 (75.96%), Query Frame = 2
Query:    2 ECVRRIALTGFAVFIYPESSAQIAVVLLLAVIFMVMSEILCPFVRPVEMWLYRAGHYVVFASMYLALLLRVDVSSERTQSQEVFSGVLVIAHVTMILVVIAQGV 313
            EC RRIALTG AVFIYP S+AQ+A+ ++ A  F+ +S++L PF  P++ WLYR+G +V+F SM+L LLL+VD S E +QSQE+F+ +L+ AHV M+L +  Q V
Sbjct:  281 ECGRRIALTGLAVFIYPGSAAQVALEVVFAAFFIGISDVLSPFADPLDAWLYRSGAWVIFISMFLTLLLKVDASDEDSQSQELFAKLLISAHVGMVLAIAVQAV 384          
BLAST of mRNA_F-serratus_M_contig719.18389.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 8.860e-26
Identity = 56/103 (54.37%), Postives = 77/103 (74.76%), Query Frame = 2
Query:    2 ECVRRIALTGFAVFIYPESSAQIAVVLLLAVIFMVMSEILCPFVRPVEMWLYRAGHYVVFASMYLALLLRVDVSSERTQSQEVFSGVLVIAHVTMILVVIAQG 310
            EC RRI LTG AVF++P ++AQ+A+ +  A   +V+ E+L PFV P++ WLYR+G  VVF SMYLALLL+VD S E ++SQ+VF+ VLV AHV+M+L V+   
Sbjct:  256 ECGRRIVLTGLAVFLFPGTAAQVAIEVAFAAGLLVVFEVLAPFVDPMDAWLYRSGALVVFFSMYLALLLKVDASDENSESQQVFAAVLVAAHVSMVLAVLLSS 358          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig719.18389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTT9_ECTSI3.690e-4883.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L324_9PHAE3.240e-4781.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTU5_ECTSI2.080e-4679.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTU0_ECTSI3.640e-4677.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0E1_9PHAE1.310e-4577.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G021_ECTSI4.100e-3160.95Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5JWI3_9PHAE1.540e-2756.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4E3_9PHAE2.150e-2754.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPF7_ECTSI3.230e-2653.85Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5KHA3_9PHAE8.860e-2654.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig719contigF-serratus_M_contig719:87283..87613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size331
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932196.9334044-CDS-F-serratus_M_contig719:87282..876121622932196.9334044-CDS-F-serratus_M_contig719:87282..87612Fucus serratus maleCDSF-serratus_M_contig719 87283..87612 +
1690964194.1279247-CDS-F-serratus_M_contig719:87282..876121690964194.1279247-CDS-F-serratus_M_contig719:87282..87612Fucus serratus maleCDSF-serratus_M_contig719 87283..87612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig719.18389.1prot_F-serratus_M_contig719.18389.1Fucus serratus malepolypeptideF-serratus_M_contig719 87283..87612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig719.18389.1

>prot_F-serratus_M_contig719.18389.1 ID=prot_F-serratus_M_contig719.18389.1|Name=mRNA_F-serratus_M_contig719.18389.1|organism=Fucus serratus male|type=polypeptide|length=110bp
GVCPSDCLDGVCGVHLPRELGADSSRSSTCGDFHGYVGDPLPVRPSGRDV
ALPRWSLRGLREYVPCTSAARGCLERAHAKPGGLLRCACYRSRHHDSCRD
CSGCVRLCGV
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mRNA from alignment at F-serratus_M_contig719:87283..87613+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig719.18389.1 ID=mRNA_F-serratus_M_contig719.18389.1|Name=mRNA_F-serratus_M_contig719.18389.1|organism=Fucus serratus male|type=mRNA|length=331bp|location=Sequence derived from alignment at F-serratus_M_contig719:87283..87613+ (Fucus serratus male)
GGAGTGTGTCCGTCGGATTGCCTTGACGGGGTTTGCGGTGTTCATCTACC CCGAGAGCTCGGCGCAGATAGCAGTCGTTCTTCTACTTGCGGTGATTTTC ATGGTTATGTCGGAGATCCTCTGCCCGTTCGTCCGTCCGGTCGAGATGTG GCTTTACCGCGCTGGTCACTACGTGGTCTTCGCGAGTATGTACCTTGCAC TTCTGCTGCGCGTGGATGTCTCGAGCGAGCGCACGCAAAGCCAGGAGGTC TTCTCCGGTGTGCTTGTTATCGCTCACGTCACCATGATTCTTGTCGTGAT TGCTCAGGGTGTGTTCGTCTTTGTGGGGTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig719:87283..87613+

>mRNA_F-serratus_M_contig719.18389.1 ID=mRNA_F-serratus_M_contig719.18389.1|Name=mRNA_F-serratus_M_contig719.18389.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig719:87283..87613+ (Fucus serratus male)
GGAGTGTGTCCGTCGGATTGCCTTGACGGGGTTTGCGGTGTTCATCTACC
CCGAGAGCTCGGCGCAGATAGCAGTCGTTCTTCTACTTGCGGTGATTTTC
ATGGTTATGTCGGAGATCCTCTGCCCGTTCGTCCGTCCGGTCGAGATGTG
GCTTTACCGCGCTGGTCACTACGTGGTCTTCGCGAGTATGTACCTTGCAC
TTCTGCTGCGCGTGGATGTCTCGAGCGAGCGCACGCAAAGCCAGGAGGTC
TTCTCCGGTGTGCTTGTTATCGCTCACGTCACCATGATTCTTGTCGTGAT
TGCTCAGGGTGTGTTCGTCTTTGTGGGGTGGGAGTGTGTCCGTCGGATTG
CCTTGACGGGGTTTGCGGTGTTCATCTACCCCGAGAGCTCGGCGCAGATA
GCAGTCGTTCTTCTACTTGCGGTGATTTTCATGGTTATGTCGGAGATCCT
CTGCCCGTTCGTCCGTCCGGTCGAGATGTGGCTTTACCGCGCTGGTCACT
ACGTGGTCTTCGCGAGTATGTACCTTGCACTTCTGCTGCGCGTGGATGTC
TCGAGCGAGCGCACGCAAAGCCAGGAGGTCTTCTCCGGTGTGCTTGTTAT
CGCTCACGTCACCATGATTCTTGTCGTGATTGCTCAGGGTGTGTTCGTCT
TTGTGGGGTG
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