mRNA_F-serratus_M_contig7180.18385.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig7180.18385.1
Unique Name	mRNA_F-serratus_M_contig7180.18385.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig7180.18385.1 vs. uniprot
Match: A0A6H5KZM5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM5_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 5.730e-85
Identity = 123/126 (97.62%), Postives = 123/126 (97.62%), Query Frame = 1

Query:    1 MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKRSP 378
            MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRK WKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKK  P
Sbjct:    9 MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKEWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKP 134

[Close]

BLAST of mRNA_F-serratus_M_contig7180.18385.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 9.980e-85
Identity = 123/126 (97.62%), Postives = 124/126 (98.41%), Query Frame = 1

Query:    1 MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKRSP 378
            MNPGENPD+YFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKK  P
Sbjct:  146 MNPGENPDNYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKP 271

[Close]

BLAST of mRNA_F-serratus_M_contig7180.18385.1 vs. uniprot
Match: A0A6H5JLQ5_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ5_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 3.470e-82
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1

Query:    1 MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRA 360
            MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKL+V RDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGF+M TTAS+IICHSCYEPGHIRRNCPKIKNRA
Sbjct:   79 MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLIVLRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFSMVTTASEIICHSCYEPGHIRRNCPKIKNRA 198

[Close]

BLAST of mRNA_F-serratus_M_contig7180.18385.1 vs. uniprot
Match: A0A6H5K783_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K783_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 4.120e-81
Identity = 118/126 (93.65%), Postives = 119/126 (94.44%), Query Frame = 1

Query:    1 MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKRSP 378
            MNPGENPDD FNQKHLLR QLDK+GEPIS RRFKDICVQGFSDE KDVKLMVFRDPTFNVLDMQSTMRNIFLDEQS KGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKK  P
Sbjct:   18 MNPGENPDDNFNQKHLLRAQLDKIGEPISGRRFKDICVQGFSDEDKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSHKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKP 143

[Close]

BLAST of mRNA_F-serratus_M_contig7180.18385.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 259 bits (663), Expect = 8.030e-81
Identity = 123/126 (97.62%), Postives = 123/126 (97.62%), Query Frame = 1

Query:    1 MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKRSP 378
            MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDM STMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKK  P
Sbjct:  164 MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKP 289

[Close]

BLAST of mRNA_F-serratus_M_contig7180.18385.1 vs. uniprot
Match: A0A6H5JZ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ53_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 4.480e-79
Identity = 118/126 (93.65%), Postives = 121/126 (96.03%), Query Frame = 1

Query:    1 MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKRSP 378
            MNPGENPDDYFNQKH L  QLDKMGEPISDRRFKDICVQGFSDEY+DVKLM+FRDPTFNVLDMQSTMRNI+LDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKK  P
Sbjct:    9 MNPGENPDDYFNQKHPLCVQLDKMGEPISDRRFKDICVQGFSDEYEDVKLMLFRDPTFNVLDMQSTMRNIYLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKP 134

[Close]

BLAST of mRNA_F-serratus_M_contig7180.18385.1 vs. uniprot
Match: A0A6H5KVX0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX0_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 6.830e-77
Identity = 111/116 (95.69%), Postives = 113/116 (97.41%), Query Frame = 1

Query:    1 MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKI 348
            MNPGENPDDYFNQK+LLRTQLDKMGE ISDRRFKDICV+GFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFA ATTASDIICHSCYE GHIRRNCPKI
Sbjct:  146 MNPGENPDDYFNQKYLLRTQLDKMGEAISDRRFKDICVRGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFATATTASDIICHSCYESGHIRRNCPKI 261

[Close]

BLAST of mRNA_F-serratus_M_contig7180.18385.1 vs. uniprot
Match: A0A6H5JQF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF5_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 1.750e-76
Identity = 112/122 (91.80%), Postives = 114/122 (93.44%), Query Frame = 1

Query:    1 MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKK 366
            MNPGE+P DYFNQKHLLRTQLDKMGEPISDRRFKDI VQGFSDEYKDVKLMVFR+PTFNVLDMQ TMRNIFLDEQSRKGWKG IA RGFAMATTASDIICHSCYE GHI RN PKIKNRAKK
Sbjct:    9 MNPGEDPGDYFNQKHLLRTQLDKMGEPISDRRFKDIGVQGFSDEYKDVKLMVFRNPTFNVLDMQPTMRNIFLDEQSRKGWKGHIARRGFAMATTASDIICHSCYERGHISRNFPKIKNRAKK 130

[Close]

BLAST of mRNA_F-serratus_M_contig7180.18385.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 5.540e-76
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 1

Query:    1 MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKN 354
            MN GENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASD ICHSCYEPGHIRRNCPKIKN
Sbjct:  122 MNLGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDSICHSCYEPGHIRRNCPKIKN 239

[Close]

BLAST of mRNA_F-serratus_M_contig7180.18385.1 vs. uniprot
Match: A0A6H5JKH7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH7_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 3.460e-75
Identity = 120/126 (95.24%), Postives = 121/126 (96.03%), Query Frame = 1

Query:    1 MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKRSP 378
            MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTF+VLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIIC   YEPGHIRRNCPKIKNRAKKK  P
Sbjct:    9 MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFSVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIIC---YEPGHIRRNCPKIKNRAKKKTKP 131

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig7180.18385.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig7180.18385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KZM5_9PHAE	5.730e-85	97.62	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JF66_9PHAE	9.980e-85	97.62	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A6H5JLQ5_9PHAE	3.470e-82	95.83	CCHC-type domain-containing protein (Fragment) n=1...	[more]
A0A6H5K783_9PHAE	4.120e-81	93.65	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5L580_9PHAE	8.030e-81	97.62	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JZ53_9PHAE	4.480e-79	93.65	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KVX0_9PHAE	6.830e-77	95.69	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JQF5_9PHAE	1.750e-76	91.80	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KT84_9PHAE	5.540e-76	98.31	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JKH7_9PHAE	3.460e-75	95.24	gag_pre-integrs domain-containing protein n=1 Tax=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig7180	contig	F-serratus_M_contig7180:9024..9407 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	384
Cds size	384
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932196.535483-CDS-F-serratus_M_contig7180:9023..9407	1622932196.535483-CDS-F-serratus_M_contig7180:9023..9407	Fucus serratus male	CDS	F-serratus_M_contig7180 9024..9407 -
1690964193.9999194-CDS-F-serratus_M_contig7180:9023..9407	1690964193.9999194-CDS-F-serratus_M_contig7180:9023..9407	Fucus serratus male	CDS	F-serratus_M_contig7180 9024..9407 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig7180.18385.1	prot_F-serratus_M_contig7180.18385.1	Fucus serratus male	polypeptide	F-serratus_M_contig7180 9024..9407 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig7180:9024..9407-
coding sequence from alignment at F-serratus_M_contig7180:9024..9407-

protein sequence of mRNA_F-serratus_M_contig7180.18385.1

>prot_F-serratus_M_contig7180.18385.1 ID=prot_F-serratus_M_contig7180.18385.1|Name=mRNA_F-serratus_M_contig7180.18385.1|organism=Fucus serratus male|type=polypeptide|length=128bp
MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKL
MVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIIC
HSCYEPGHIRRNCPKIKNRAKKKRSPPE

mRNA from alignment at F-serratus_M_contig7180:9024..9407-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig7180.18385.1 ID=mRNA_F-serratus_M_contig7180.18385.1|Name=mRNA_F-serratus_M_contig7180.18385.1|organism=Fucus serratus male|type=mRNA|length=384bp|location=Sequence derived from alignment at F-serratus_M_contig7180:9024..9407- (Fucus serratus male)
ATGAACCCTGGTGAAAATCCCGACGACTACTTCAACCAGAAGCACCTACT
TCGCACCCAGCTGGATAAGATGGGAGAACCCATCTCCGACCGCCGCTTCA
AGGACATCTGCGTACAGGGCTTCTCCGACGAATACAAGGACGTCAAACTG
ATGGTGTTCAGGGACCCAACCTTCAACGTCCTGGACATGCAATCCACCAT
GCGCAACATCTTCTTGGACGAACAATCGCGCAAGGGATGGAAGGGACGCA
TAGCTGGTCGAGGATTTGCCATGGCAACGACCGCGTCTGACATCATCTGC
CACAGCTGCTACGAGCCGGGGCACATCAGGAGGAACTGCCCCAAGATCAA
GAATAGGGCGAAGAAGAAACGAAGCCCGCCGGAG

Coding sequence (CDS) from alignment at F-serratus_M_contig7180:9024..9407-

>mRNA_F-serratus_M_contig7180.18385.1 ID=mRNA_F-serratus_M_contig7180.18385.1|Name=mRNA_F-serratus_M_contig7180.18385.1|organism=Fucus serratus male|type=CDS|length=768bp|location=Sequence derived from alignment at F-serratus_M_contig7180:9024..9407- (Fucus serratus male)
ATGAACCCTGGTGAAAATCCCGACGACTACTTCAACCAGAAGCACCTACT
TCGCACCCAGCTGGATAAGATGGGAGAACCCATCTCCGACCGCCGCTTCA
AGGACATCTGCGTACAGGGCTTCTCCGACGAATACAAGGACGTCAAACTG
ATGGTGTTCAGGGACCCAACCTTCAACGTCCTGGACATGCAATCCACCAT
GCGCAACATCTTCTTGGACGAACAATCGCGCAAGGGATGGAAGGGACGCA
TAGCTGGTCGAGGATTTGCCATGGCAACGACCGCGTCTGACATCATCTGC
CACAGCTGCTACGAGCCGGGGCACATCAGGAGGAACTGCCCCAAGATCAA
GAATAGGGCGAAGAAGAAACGAAGCCCGCCGGAGATGAACCCTGGTGAAA
ATCCCGACGACTACTTCAACCAGAAGCACCTACTTCGCACCCAGCTGGAT
AAGATGGGAGAACCCATCTCCGACCGCCGCTTCAAGGACATCTGCGTACA
GGGCTTCTCCGACGAATACAAGGACGTCAAACTGATGGTGTTCAGGGACC
CAACCTTCAACGTCCTGGACATGCAATCCACCATGCGCAACATCTTCTTG
GACGAACAATCGCGCAAGGGATGGAAGGGACGCATAGCTGGTCGAGGATT
TGCCATGGCAACGACCGCGTCTGACATCATCTGCCACAGCTGCTACGAGC
CGGGGCACATCAGGAGGAACTGCCCCAAGATCAAGAATAGGGCGAAGAAG
AAACGAAGCCCGCCGGAG