mRNA_F-serratus_M_contig714.18353.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig714.18353.1
Unique NamemRNA_F-serratus_M_contig714.18353.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig714.18353.1 vs. uniprot
Match: D7G7X7_ECTSI (ATP binding / amino acid binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X7_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 2.040e-21
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 3 
Query:    3 IMNCICSGMAFLHGEGVIHGDLKSANVLFDSAGMAKIADFGTARWTQHVASTCLATAFSTTKSNNAHMSIAWAAPEVGKEG 245
            I+  IC+GMAFLHG+  +HGDLKSANVL D  G AKI DFGT+RW+QH  ST LAT ++T  + +  MS+AW+APEV + G
Sbjct:  911 IIGDICAGMAFLHGKNTVHGDLKSANVLLDGGGRAKIGDFGTSRWSQHTNSTGLAT-YTTKANQSTQMSLAWSAPEVLESG 990
[Close]
BLAST of mRNA_F-serratus_M_contig714.18353.1 vs. uniprot
Match: A0A6H5KF25_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF25_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.040e-21
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 3 
Query:    3 IMNCICSGMAFLHGEGVIHGDLKSANVLFDSAGMAKIADFGTARWTQHVASTCLATAFSTTKSNNAHMSIAWAAPEVGKEG 245
            I+  IC+GMAFLHG+  +HGDLKSANVL D  G AKI DFGT+RW+QH  ST LAT ++T  + +  MS+AW+APEV + G
Sbjct:  936 IIGDICAGMAFLHGKNTVHGDLKSANVLLDGGGRAKIGDFGTSRWSQHTNSTGLAT-YTTKANQSTQMSLAWSAPEVLESG 1015
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BLAST of mRNA_F-serratus_M_contig714.18353.1 vs. uniprot
Match: D8LAU2_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU2_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 2.210e-21
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 3 
Query:    3 IMNCICSGMAFLHGEGVIHGDLKSANVLFDSAGMAKIADFGTARWTQHVASTCLATAFSTTKSNNAHMSIAWAAPEV 233
            I+  +CSGMAFLH +  +HGDLKSANVL D AG AKI DFGT+RW QH  ST LAT ++T  S +  MS+AW+APEV
Sbjct:  223 IIGDVCSGMAFLHSKDTVHGDLKSANVLLDGAGRAKIGDFGTSRWAQHTNSTGLAT-YTTRSSRSTPMSLAWSAPEV 298
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BLAST of mRNA_F-serratus_M_contig714.18353.1 vs. uniprot
Match: D7G7F2_ECTSI (Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs/ leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F2_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 3.810e-21
Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 3 
Query:    3 IMNCICSGMAFLHGEGVIHGDLKSANVLFDSAGMAKIADFGTARWTQHVASTCLATAFSTTKSNNAHMSIAWAAPEV 233
            I+  IC+GMAFLHG+  +HGDLKSANVL D  G AKIADFGT+RWTQ   ST LAT ++T  S    MSIAW+APEV
Sbjct:  995 IIRDICTGMAFLHGKNTVHGDLKSANVLLDGDGRAKIADFGTSRWTQTTNSTGLAT-YTTRSSQTTQMSIAWSAPEV 1070
[Close]
BLAST of mRNA_F-serratus_M_contig714.18353.1 vs. uniprot
Match: D8LRE9_ECTSI (Transmembrane receptor kinase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE9_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 9.600e-21
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 3 
Query:    3 IMNCICSGMAFLHGEGVIHGDLKSANVLFDSAGMAKIADFGTARWTQHVASTCLATAFSTTKSNNAHMSIAWAAPEVGKEG 245
            I+  IC+GMAFLH +  +HGDLKSANVL D +G AKI DFGT+RW+QH  ST LAT ++T  S    MS+AW+APEV + G
Sbjct:  786 IIGDICAGMAFLHSKDTVHGDLKSANVLLDGSGRAKIGDFGTSRWSQHTNSTGLAT-YTTRSSPGTQMSLAWSAPEVLESG 865
[Close]
BLAST of mRNA_F-serratus_M_contig714.18353.1 vs. uniprot
Match: D7FL57_ECTSI (Hypothetical leucine rich repeat kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL57_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 9.610e-21
Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 3 
Query:    3 IMNCICSGMAFLHGEGVIHGDLKSANVLFDSAGMAKIADFGTARWTQHVASTCLATAFSTTKSNNAHMSIAWAAPEV 233
            I+  IC+GMAFLHG+  +HGDLKSANVL D  G AKIADFGT+RWTQ   ST LAT ++T  S    MSIAW+APEV
Sbjct:  817 IIRDICTGMAFLHGKNTVHGDLKSANVLLDGDGRAKIADFGTSRWTQTTNSTGLAT-YTTRSSQTTLMSIAWSAPEV 892
[Close]
BLAST of mRNA_F-serratus_M_contig714.18353.1 vs. uniprot
Match: A0A6H5JSI8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI8_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.440e-20
Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = 3 
Query:    3 IMNCICSGMAFLHGEGVIHGDLKSANVLFDSAGMAKIADFGTARWTQHVASTCLATAFSTTKSNNAHMSIAWAAPEV 233
            I+  IC+GMAFLH +  +HGDLKSANVL D  G AKIADFGT+RWTQ + ST L T ++T  S    MSIAW+APEV
Sbjct:  733 IIRDICTGMAFLHSKNTVHGDLKSANVLLDDIGRAKIADFGTSRWTQTINSTGLTT-YTTKSSQTTQMSIAWSAPEV 808
[Close]
BLAST of mRNA_F-serratus_M_contig714.18353.1 vs. uniprot
Match: D8LHV1_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV1_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 3.350e-20
Identity = 49/81 (60.49%), Postives = 62/81 (76.54%), Query Frame = 3 
Query:    3 IMNCICSGMAFLHGEGVIHGDLKSANVLFDSAGMAKIADFGTARWTQHVASTCLATAFSTTKSNNAHMSIAWAAPEVGKEG 245
            I+  IC+GMAFLH +  +HGDLKSANVL D +G AKI DFGT+RW+QH  ST LAT ++TTK +   MS+AW+APEV + G
Sbjct:  925 IIGDICAGMAFLHEKDTVHGDLKSANVLLDGSGRAKIGDFGTSRWSQHTHSTGLAT-YTTTKPST-QMSLAWSAPEVLESG 1003
[Close]
BLAST of mRNA_F-serratus_M_contig714.18353.1 vs. uniprot
Match: A0A6H5KY76_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY76_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.920e-18
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 3 
Query:    3 IMNCICSGMAFLHGEGVIHGDLKSANVLFDSAGMAKIADFGTARWTQHVASTCLATAFSTTKSNNAHMSIAWAAPEV 233
            I+  IC+GM FLH +  +HGDLKSANVL D AG AKI DFGT+RW+ H  ST LAT   T    N  MS+AW+APEV
Sbjct: 1045 IIGDICAGMHFLHSKETVHGDLKSANVLLDGAGRAKIGDFGTSRWSYHTNSTGLATY--TKAGQNTQMSLAWSAPEV 1119
[Close]
BLAST of mRNA_F-serratus_M_contig714.18353.1 vs. uniprot
Match: D8LTP7_ECTSI (Two component regulator three Y domain protein/ leucine rich repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP7_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 2.590e-18
Identity = 47/77 (61.04%), Postives = 56/77 (72.73%), Query Frame = 3 
Query:    3 IMNCICSGMAFLHGEGVIHGDLKSANVLFDSAGMAKIADFGTARWTQHVASTCLATAFSTTKSNNAHMSIAWAAPEV 233
            I+  +C GMAFLH +  +HGDLKSANVLFD+ G AKIADFGT+ WTQH  ST LAT ++T       MS+ WAAPEV
Sbjct:  697 IVRDVCCGMAFLHAKATVHGDLKSANVLFDATGRAKIADFGTSLWTQH--STRLAT-YTTKPREMVGMSLPWAAPEV 770
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig714.18353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7X7_ECTSI2.040e-2159.26ATP binding / amino acid binding / protein kinase/... [more]
A0A6H5KF25_9PHAE2.040e-2159.26Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LAU2_ECTSI2.210e-2162.34Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G7F2_ECTSI3.810e-2164.94Tyrosine kinase specific for activated (GTP-bound)... [more]
D8LRE9_ECTSI9.600e-2159.26Transmembrane receptor kinase n=2 Tax=Ectocarpus s... [more]
D7FL57_ECTSI9.610e-2164.94Hypothetical leucine rich repeat kinase n=1 Tax=Ec... [more]
A0A6H5JSI8_9PHAE2.440e-2062.34Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LHV1_ECTSI3.350e-2060.49Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5KY76_9PHAE1.920e-1859.74Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LTP7_ECTSI2.590e-1861.04Two component regulator three Y domain protein/ le... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig714contigF-serratus_M_contig714:188458..189054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue3.7e-18
Seed eggNOG ortholog2880.D7G7X7
Preferred nameRIPK4
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K14767,ko:K16175,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04390,ko04391,ko04530,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05165,ko05169,ko05203,map04064,map04210,map04217,map04390,map04391,map04530,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05165,map05169,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG0515@1,COG4886@1,KOG0192@2759,KOG0619@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Exons2
Model size290
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig714.18353.1prot_F-serratus_M_contig714.18353.1Fucus serratus malepolypeptideF-serratus_M_contig714 188458..189049 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932191.6231947-CDS-F-serratus_M_contig714:188457..1886371622932191.6231947-CDS-F-serratus_M_contig714:188457..188637Fucus serratus maleCDSF-serratus_M_contig714 188458..188637 -
1690964192.0437655-CDS-F-serratus_M_contig714:188457..1886371690964192.0437655-CDS-F-serratus_M_contig714:188457..188637Fucus serratus maleCDSF-serratus_M_contig714 188458..188637 -
1622932191.6471221-CDS-F-serratus_M_contig714:188944..1890491622932191.6471221-CDS-F-serratus_M_contig714:188944..189049Fucus serratus maleCDSF-serratus_M_contig714 188945..189049 -
1690964192.066032-CDS-F-serratus_M_contig714:188944..1890491690964192.066032-CDS-F-serratus_M_contig714:188944..189049Fucus serratus maleCDSF-serratus_M_contig714 188945..189049 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932191.67156-UTR-F-serratus_M_contig714:189049..1890541622932191.67156-UTR-F-serratus_M_contig714:189049..189054Fucus serratus maleUTRF-serratus_M_contig714 189050..189054 -
1690964192.0887434-UTR-F-serratus_M_contig714:189049..1890541690964192.0887434-UTR-F-serratus_M_contig714:189049..189054Fucus serratus maleUTRF-serratus_M_contig714 189050..189054 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig714.18353.1

>prot_F-serratus_M_contig714.18353.1 ID=prot_F-serratus_M_contig714.18353.1|Name=mRNA_F-serratus_M_contig714.18353.1|organism=Fucus serratus male|type=polypeptide|length=95bp
MNCICSGMAFLHGEGVIHGDLKSANVLFDSAGMAKIADFGTARWTQHVAS
TCLATAFSTTKSNNAHMSIAWAAPEVGKEGCLGTPHTISYFHRH*
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mRNA from alignment at F-serratus_M_contig714:188458..189054-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig714.18353.1 ID=mRNA_F-serratus_M_contig714.18353.1|Name=mRNA_F-serratus_M_contig714.18353.1|organism=Fucus serratus male|type=mRNA|length=597bp|location=Sequence derived from alignment at F-serratus_M_contig714:188458..189054- (Fucus serratus male)
AAATCATGAATTGCATTTGCTCCGGCATGGCGTTTCTTCACGGCGAGGGC
GTGATCCATGGCGATCTCAAGTCTGCGAATGTGCTCTTTGACAGCGCTGG
CATGGCAAAGGTGACGAGGAAAACCCGTGAGGAAAAAATACTAATAATGT
CGTGCCTGAACGAGGCTCCAAATTATACGCCTTGAGGAGTGCGGGTAGGT
AGATGTACTGGGCATATCTTGCAAGTAGAACTGGGTTGACTGCTTTTGAA
CAAAGGTTCTGCAGATGCTGAAGTTTCGATTTTGTTGCTATATACCACCA
CTACTCCCGTTAAGGGGTACGACGCCACCGCCTTAACGGATGATGCGACC
GGTATTCATAACTTTTCTTTGTATCCTCTTCATTTTGGCGCCGCCGACAC
CCTTGACGATGTGTCAGATTGCTGATTTTGGAACTGCTCGATGGACCCAA
CATGTGGCATCAACGTGCCTGGCTACTGCATTCTCGACTACTAAGAGCAA
CAACGCTCATATGAGCATCGCCTGGGCCGCTCCTGAGGTGGGAAAAGAAG
GATGCCTTGGAACACCCCATACAATATCTTATTTTCATCGGCACTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig714:188458..189054-

>mRNA_F-serratus_M_contig714.18353.1 ID=mRNA_F-serratus_M_contig714.18353.1|Name=mRNA_F-serratus_M_contig714.18353.1|organism=Fucus serratus male|type=CDS|length=570bp|location=Sequence derived from alignment at F-serratus_M_contig714:188458..189054- (Fucus serratus male)
ATGAATTGCATTTGCTCCGGCATGGCGTTTCTTCACGGCGAGGGCGTGAT
CCATGGCGATCTCAAGTCTGCGAATGTGCTCTTTGACAGCGCTGGCATGG
CAAAGATGAATTGCATTTGCTCCGGCATGGCGTTTCTTCACGGCGAGGGC
GTGATCCATGGCGATCTCAAGTCTGCGAATGTGCTCTTTGACAGCGCTGG
CATGGCAAAGATTGCTGATTTTGGAACTGCTCGATGGACCCAACATGTGG
CATCAACGTGCCTGGCTACTGCATTCTCGACTACTAAGAGCAACAACGCT
CATATGAGCATCGCCTGGGCCGCTCCTGAGGTGGGAAAAGAAGGATGCCT
TGGAACACCCCATACAATATCTTATTTTCATCGGCACTGAATTGCTGATT
TTGGAACTGCTCGATGGACCCAACATGTGGCATCAACGTGCCTGGCTACT
GCATTCTCGACTACTAAGAGCAACAACGCTCATATGAGCATCGCCTGGGC
CGCTCCTGAGGTGGGAAAAGAAGGATGCCTTGGAACACCCCATACAATAT
CTTATTTTCATCGGCACTGA
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