mRNA_F-serratus_M_contig714.18351.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig714.18351.1
Unique NamemRNA_F-serratus_M_contig714.18351.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig714.18351.1 vs. uniprot
Match: A0A382BNH5_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382BNH5_9ZZZZ)

HSP 1 Score: 64.3 bits (155), Expect = 5.110e-12
Identity = 34/73 (46.58%), Postives = 42/73 (57.53%), Query Frame = 1 
Query:    7 RHRAGVNPYTPSYELAETCGFDKLSPPPILCQKLKLSPKYLL-----LIPKLQSHFVKFLQHGYLKACGICPI 210
            RHRAGV PYT SYE AE   F+K S PP+ C    L P+ L      L+PKL+ HF +FL    LK  G+  +
Sbjct:    1 RHRAGVTPYTSSYEFAECYVFNKQSQPPLCCNPFPLQPQGLHVSGAHLLPKLRCHFAEFLHPSCLKRLGLLAL 73
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BLAST of mRNA_F-serratus_M_contig714.18351.1 vs. uniprot
Match: A0A1V5J5Q1_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium ADurb.BinA012 TaxID=1852815 RepID=A0A1V5J5Q1_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 5.020e-10
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:    1 TSRHRAGVNPYTPSYELAETCGFDKLSPPPILCQKLKLSPKYLLLIPKLQSHFVKFLQHGYLKACGI 201
            T +HRAGV+PYT S++LAETC F K S  P LC  L ++P    L+PKL+ +F +FL +  L    I
Sbjct:   81 TFQHRAGVSPYTSSFDLAETCVFAKQSLGPFLCGHLSVAP----LLPKLRGYFAEFLNNASLAHLRI 143
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BLAST of mRNA_F-serratus_M_contig714.18351.1 vs. uniprot
Match: A7VSA7_9FIRM (Uncharacterized protein n=1 Tax=[Clostridium] leptum DSM 753 TaxID=428125 RepID=A7VSA7_9FIRM)

HSP 1 Score: 55.8 bits (133), Expect = 4.130e-8
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:    1 TSRHRAGVNPYTPSYELAETCGFDKLSPPPILCQKLKLSPKYLLLIPKLQSHFVKFLQH 177
            T +HRAGV+PYT S++LAETC F K SP PI C  +  +     L PKL+  F +FL +
Sbjct:   47 TFQHRAGVSPYTSSFDLAETCVFAKQSPGPIHCGSISGAS----LFPKLRDQFAEFLNY 101
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BLAST of mRNA_F-serratus_M_contig714.18351.1 vs. uniprot
Match: A0A078KVC2_9FIRM (Uncharacterized protein n=1 Tax=[Clostridium] cellulosi TaxID=29343 RepID=A0A078KVC2_9FIRM)

HSP 1 Score: 52.0 bits (123), Expect = 1.720e-6
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    1 TSRHRAGVNPYTPSYELAETCGFDKLSPPPILC 99
            T RHRAGV+PYT S++LAETC F K SP PILC
Sbjct:   47 TFRHRAGVSPYTSSFDLAETCVFAKQSPGPILC 79
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BLAST of mRNA_F-serratus_M_contig714.18351.1 vs. uniprot
Match: A0A1C6I9E2_9FIRM (Uncharacterized protein n=1 Tax=uncultured Ruminococcus sp. TaxID=165186 RepID=A0A1C6I9E2_9FIRM)

HSP 1 Score: 52.0 bits (123), Expect = 2.820e-6
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    1 TSRHRAGVNPYTPSYELAETCGFDKLSPPPILC 99
            T RHRAGV+PYT S++LAETC F K SP PILC
Sbjct:   47 TFRHRAGVSPYTSSFDLAETCVFAKQSPGPILC 79
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BLAST of mRNA_F-serratus_M_contig714.18351.1 vs. uniprot
Match: A0A0J8BG93_BETVV (Uncharacterized protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8BG93_BETVV)

HSP 1 Score: 47.0 bits (110), Expect = 7.800e-5
Identity = 22/33 (66.67%), Postives = 23/33 (69.70%), Query Frame = 1 
Query:    1 TSRHRAGVNPYTPSYELAETCGFDKLSPPPILC 99
            T RHRAGV PYT SY+ AE C F K  PPP LC
Sbjct:   62 TFRHRAGVRPYTSSYDFAEPCVFVKQLPPPGLC 94
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BLAST of mRNA_F-serratus_M_contig714.18351.1 vs. uniprot
Match: A0A0N9HU65_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium 5G12 TaxID=1701325 RepID=A0A0N9HU65_9BACT)

HSP 1 Score: 45.1 bits (105), Expect = 8.260e-5
Identity = 22/38 (57.89%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:    1 TSRHRAGVNPYTPSYELAETCGFDKLSPPPILCQKLKL 114
            T RHRAGV+PYT S++ AETC F K S  P  C  L+L
Sbjct:    2 TFRHRAGVSPYTSSFDFAETCVFGKQSLGPFHCGHLEL 39
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig714.18351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A382BNH5_9ZZZZ5.110e-1246.58Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A1V5J5Q1_9BACT5.020e-1047.76Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
A7VSA7_9FIRM4.130e-849.15Uncharacterized protein n=1 Tax=[Clostridium] lept... [more]
A0A078KVC2_9FIRM1.720e-672.73Uncharacterized protein n=1 Tax=[Clostridium] cell... [more]
A0A1C6I9E2_9FIRM2.820e-672.73Uncharacterized protein n=1 Tax=uncultured Ruminoc... [more]
A0A0J8BG93_BETVV7.800e-566.67Uncharacterized protein (Fragment) n=1 Tax=Beta vu... [more]
A0A0N9HU65_9BACT8.260e-557.89Uncharacterized protein n=1 Tax=uncultured bacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig714contigF-serratus_M_contig714:92984..93196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932191.3932326-CDS-F-serratus_M_contig714:92983..931961622932191.3932326-CDS-F-serratus_M_contig714:92983..93196Fucus serratus maleCDSF-serratus_M_contig714 92984..93196 +
1690964191.9468863-CDS-F-serratus_M_contig714:92983..931961690964191.9468863-CDS-F-serratus_M_contig714:92983..93196Fucus serratus maleCDSF-serratus_M_contig714 92984..93196 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig714.18351.1prot_F-serratus_M_contig714.18351.1Fucus serratus malepolypeptideF-serratus_M_contig714 92984..93196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig714.18351.1

>prot_F-serratus_M_contig714.18351.1 ID=prot_F-serratus_M_contig714.18351.1|Name=mRNA_F-serratus_M_contig714.18351.1|organism=Fucus serratus male|type=polypeptide|length=71bp
TSRHRAGVNPYTPSYELAETCGFDKLSPPPILCQKLKLSPKYLLLIPKLQ
SHFVKFLQHGYLKACGICPI*
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mRNA from alignment at F-serratus_M_contig714:92984..93196+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig714.18351.1 ID=mRNA_F-serratus_M_contig714.18351.1|Name=mRNA_F-serratus_M_contig714.18351.1|organism=Fucus serratus male|type=mRNA|length=213bp|location=Sequence derived from alignment at F-serratus_M_contig714:92984..93196+ (Fucus serratus male)
ACCTCCCGACACCGGGCAGGTGTCAATCCCTATACACCCTCTTACGAGTT
AGCAGAGACCTGTGGTTTTGATAAATTGTCGCCACCCCCGATTTTGTGTC
AAAAATTGAAGCTTTCACCTAAATATTTACTCCTTATTCCAAAGTTACAG
AGTCATTTTGTAAAGTTCCTTCAACACGGTTATCTCAAAGCCTGTGGTAT
TTGCCCTATCTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig714:92984..93196+

>mRNA_F-serratus_M_contig714.18351.1 ID=mRNA_F-serratus_M_contig714.18351.1|Name=mRNA_F-serratus_M_contig714.18351.1|organism=Fucus serratus male|type=CDS|length=426bp|location=Sequence derived from alignment at F-serratus_M_contig714:92984..93196+ (Fucus serratus male)
ACCTCCCGACACCGGGCAGGTGTCAATCCCTATACACCCTCTTACGAGTT
AGCAGAGACCTGTGGTTTTGATAAATTGTCGCCACCCCCGATTTTGTGTC
AAAAATTGAAGCTTTCACCTAAATATTTACTCCTTATTCCAAAGTTACAG
AGTCATTTTGTAAAGTTCCTTCAACACGGTTATCTCAAAGCCTGTGGTAT
TTGCCCTATCTAAACCTCCCGACACCGGGCAGGTGTCAATCCCTATACAC
CCTCTTACGAGTTAGCAGAGACCTGTGGTTTTGATAAATTGTCGCCACCC
CCGATTTTGTGTCAAAAATTGAAGCTTTCACCTAAATATTTACTCCTTAT
TCCAAAGTTACAGAGTCATTTTGTAAAGTTCCTTCAACACGGTTATCTCA
AAGCCTGTGGTATTTGCCCTATCTAA
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