mRNA_F-serratus_M_contig7136.18348.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7136.18348.1
Unique NamemRNA_F-serratus_M_contig7136.18348.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig7136.18348.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.290e-40
Identity = 125/199 (62.81%), Postives = 137/199 (68.84%), Query Frame = 1 
Query:    1 GKYEEAEPLYKRSLAIDEKVYGPDHPEVATDLNNWARLFK----TLPYTNSL---------LLSQGKLAEAEPLYERSQAIQEKVLGPEHPAVATVLNNRALLLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLFKTLPYTNPLLLSQGKLAEAEPLYERSQAIREKALGPEHPDVAQSLNNRALLLQ 558
            GKY+EAEPLYKRSLAIDEKVYGPDHP+VAT LNNW RL       L Y  +L         L+ QGK  +A PLY+RS AI EKV GP+HP VA  LNNRA LL+  XXXXXXXXXXXXXXXXXXXXXXXX               + L     LL +QGK  +AEPL ERSQ IREK LGPEHPDVAQSLNNRA LL+
Sbjct:  352 GKYDEAEPLYKRSLAIDEKVYGPDHPDVATALNNWVRLLSICSSALKYLLALTTLLPVVPFLIFQGKYDQAGPLYDRSLAILEKVHGPDHPDVAQSLNNRAELLRAQXXXXXXXXXXXXXXXXXXXXXXXXLES------------QLLSNRAELLRAQGKYDDAEPLNERSQTIREKVLGPEHPDVAQSLNNRAGLLE 538
[Close]
BLAST of mRNA_F-serratus_M_contig7136.18348.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.920e-29
Identity = 91/206 (44.17%), Postives = 103/206 (50.00%), Query Frame = 1 
Query:    1 GKYEEAEPLYKRSLAIDEKVYGPDHPEVATDLNNWARLFKT--------------------LPYTNSLLLSQGKLAEAEPLYERSQAIQEKVLGPEHPAVATVLNNRALLLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLFKTLPYTNPLLLSQGKLAEAEPLYERSQAIREKALGPEHPDVAQSLNNRALLLQ 558
            G Y+EA  LY+RSLAI EK  GPDHP+VA  LNNWA L ++                    L     LL +QGK  EA  L ERS AI+EK LGP+HP VA  LNN ALLL+                                           L     LL +QG   EA  LYERS AIREKALGP+HPDVAQSLNN ALLL+
Sbjct:  284 GNYDEAGKLYERSLAIREKALGPDHPDVAQSLNNWALLLESQVRAIRIPGSFLWYPIHSGVLNNRALLLKAQGKYDEAGKLCERSLAIREKALGPDHPDVAQSLNNWALLLESQVRAIRIPGSFLWYPIHSG----------------------VLNNRALLLKAQGNYDEAGKLYERSLAIREKALGPDHPDVAQSLNNWALLLE 467
[Close]
BLAST of mRNA_F-serratus_M_contig7136.18348.1 vs. uniprot
Match: A0A6H5LI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI51_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.410e-28
Identity = 80/191 (41.88%), Postives = 96/191 (50.26%), Query Frame = 1 
Query:    1 GKYEEAEPLYKRSLAIDEKVYGPDHPEVATDLNNWARLFKTLPYT-----NSLLLSQGKLAEAEPLYERSQAIQEKVLGPEHPAVATVLNNRALLLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLFKTLPYTNPLLLSQGKLAEAEPLYERSQAIREKALGPEHPDVAQSLNNRALLLQ 558
            GK+ EAE LYKRSL+IDEKVYGPDHPEVA DLNN A L ++           L  + GK  EA PL+ +S  I+EK LGPEHP VA  LNN A +L                                          ++    NP+        +AEPLYERS AI EK  GP+HP+VA  LNN A L +
Sbjct:    7 GKFHEAESLYKRSLSIDEKVYGPDHPEVAADLNNMAVLMESQARRWGSSDKFLGSTSGKCVEAVPLHRQSLGIREKTLGPEHPDVAESLNNLAGVL------------------------------------------RSQASVNPVFEILRNFQDAEPLYERSLAIDEKVYGPDHPEVATDLNNWAALYE 155
[Close]
BLAST of mRNA_F-serratus_M_contig7136.18348.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.320e-25
Identity = 124/220 (56.36%), Postives = 134/220 (60.91%), Query Frame = 1 
Query:    1 GKYEEAEPLYKRSLAIDEKVYGPDHPEVATDLNNWARLFKT----------LPYTNSLLLSQGKLAEAEPLYERSQAIQEKVLGPEHPAVATVLNNRALLLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAR-------------------LFKT-----LPYTNPLLLSQGKLAEAEPLYERSQAIREKALGPEHPDVAQSLNNRALLLQ 558
            GKY EAEPLY+R  AI E   GP+HP VAT LNN A L +           LP T      QGK  EAEPLY  S AI EKV GP+H  VA  LNN A LL   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     LF T       + N   + QG  AEA+PLYERSQAIR+K LGP+HPDVA  LNNRA LL+
Sbjct:   31 GKYAEAEPLYERWQAIFETALGPEHPNVATALNNRAGLLEDQRRQTNFSPPLPVT-----FQGKYEEAEPLYMLSLAIDEKVYGPDHLEVAEDLNNCAGLLSIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESQALNKRVGVEGKCLCLFATSYRPHFVWLNYEYICQGNYAEAKPLYERSQAIRKKVLGPDHPDVATVLNNRAGLLK 245
[Close]
BLAST of mRNA_F-serratus_M_contig7136.18348.1 vs. uniprot
Match: D7G180_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G180_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 8.380e-24
Identity = 105/207 (50.72%), Postives = 121/207 (58.45%), Query Frame = 1 
Query:    1 GKYEEAEPLYKRSLAIDEKVYGPDHPEVATDLNNWARLFKTL----------------PYTNSLLL-----SQGKLAEAEPLYERSQAIQEKVLGPEHPAVATVLNNRALLLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLFKTLPYTNPLLLSQGKLAEAEPLYERSQAIREKALGPEHPDVAQSLNNRALLLQ 558
            GK+EEAEPLY+RSLAIDE+VYGPDHPEVATDLNN A L +T                 P T+ L L     +QGK  EAEPL+ RS AI E+V GP+HP VAT L+N A LL+  XXXXXXXXXXXXXXXXXXXXXXX                            QGK  EA  L ER+  IR   LG +HP    +++ R LL Q
Sbjct:   82 GKHEEAEPLYRRSLAIDEEVYGPDHPEVATDLNNLAGLLETQIMTSVVRQSHSVNSHEPSTDVLGLRQPDVAQGKYEEAEPLHRRSLAIDEEVYGPDHPNVATGLSNLAGLLESQXXXXXXXXXXXXXXXXXXXXXXX----------------------------QGKHTEAASLLERALTIRIDKLGEDHP---HTMSTRTLLQQ 257
[Close]
BLAST of mRNA_F-serratus_M_contig7136.18348.1 vs. uniprot
Match: A0A6H5JIH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIH9_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.460e-23
Identity = 115/223 (51.57%), Postives = 129/223 (57.85%), Query Frame = 1 
Query:    1 GKYEEAEPLYKRSLAIDEKVYGPDHPE-------------------VATDLNNWARLFKTLPYTNSLLLSQGKLAEAEPLYERSQAIQEKVLGPEHPAVATVLNNRALLLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAR-----------------------LFKTLPYTNPLLLSQGKLAEAEPLYERSQAIREKALGPEHPDVAQSLNNR 543
            GK  EAEPLY+RS AI EKV GP+ P+                   VA D ++     + LP+ +     QGK AE EPLYE+SQAI EKVLGPEHP VATVL  R     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +R                         + LP+ +     QGK AE EPLYE+SQAI EK LGPEHPDVA  L  R
Sbjct:  858 GKDAEAEPLYERSQAIQEKVLGPEQPDLRRRSTNGRCCWLISTLSVVAYDRSSSGSASRYLPWLSVRTACQGKYAEPEPLYEQSQAITEKVLGPEHPDVATVLKKRCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRRCSRDEXXXXXXXTLSVVAYDRSSSGSASRYLPWLSVRTACQGKYAEPEPLYEQSQAITEKVLGPEHPDVATVLKKR 1080
[Close]
BLAST of mRNA_F-serratus_M_contig7136.18348.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 3.250e-23
Identity = 124/245 (50.61%), Postives = 142/245 (57.96%), Query Frame = 1 
Query:    1 GKYEEAEPLYKRSLAIDEKVYGPDHPEVATDLNNWARLFKTLP----------YTNSLLLS-QGKLAEAEPLYERSQAIQEKVLGPEHPAVATVLNNRALLLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLF-------------------------------------------KTLPYTNPLLLS-----QGKLAEAEPLYERSQAIREKALGPEHPDVAQSLNNRALLLQ 558
            GK+ EAEPLY+R+  I E   GP+HP++AT LNN A L   +P           T+ + ++ QGK  EA PLYERS AI+EKVLGP+HP VA  LNNRALL  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                T+P    LL       +GK  +AEPLYER QAI EK LGPEHP VA +LNNRA LL+
Sbjct:  736 GKFAEAEPLYRRATEIWETALGPEHPQMATALNNRAGLLSNVPPHSLSSFHSSNTHHVFITFQGKYEEAGPLYERSLAIREKVLGPDHPDVAQSLNNRALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAXATPSTVPQLKLLLYCAVNCIKGKYTDAEPLYERCQAIYEKRLGPEHPYVATTLNNRAGLLE 980
[Close]
BLAST of mRNA_F-serratus_M_contig7136.18348.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 6.820e-23
Identity = 125/225 (55.56%), Postives = 138/225 (61.33%), Query Frame = 1 
Query:    1 GKYEEAEPLYKRSLAIDEKVYGPDHPEVATDLNNWARLF--------KTL----------PYTNSLLLS--QGKLAEAEPLYERSQAIQEKVLGPEHPAVATVLNNRALLLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------ARLFKTLPYTNPLLLS-------------QGKLAEAEPLYERSQAIREKALGPEHPDVAQSLNNRALLL 555
            GKY  A PLY R  AI E V GP+HP +AT L+NWA L         +TL          P T S L    QGKL EA PL +RS AI+E+VLGP+HP VAT LNN   LL+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        R  KT+  T   L +             QGK  EAEPL ERS AI +KALGP+HPDVA  LNN   LL
Sbjct: 1902 GKYAAAGPLYARCQAIQETVLGPEHPRLATTLSNWAALLYEQVTIAPETLFSACCSAIGPPMTPSRLPFPFQGKLEEAGPLVKRSLAIKERVLGPDHPDVATSLNNLGCLLESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRAVKTVHETERYLCTRKSNNHSLVSLTLQGKNEEAEPLLERSLAITKKALGPDHPDVAVVLNNWGGLL 2126
[Close]
BLAST of mRNA_F-serratus_M_contig7136.18348.1 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 6.290e-21
Identity = 74/186 (39.78%), Postives = 93/186 (50.00%), Query Frame = 1 
Query:   40 LAIDEKVYGPDHPEVATDLNNWARL----FKTLPYTNSLLLS---------QGKLAEAEPLYERSQAIQEKVLGPEHPAVATVLNNRALLLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLFKTLPYTNPLLLSQGKLAEAEPLYERSQAIREKALGPEHPDVAQSLNNRALLLQ 558
            +AI EKV GP+HP+VA  LNN A L    F T+P+T   L           QGK +EAEPLY+R QA++ K LGPEHP++A  LNNRA LL+                                     AR    L  T   LL+       +PL+ R+  I EK LGP+HPD+A  LNNRA LL+
Sbjct:  135 MAIREKVLGPEHPDVAASLNNRAGLLRKCFSTIPFTIFTLKHDSSRYPHCIQGKYSEAEPLYDRCQAMKGKALGPEHPSLAATLNNRAELLRAQGGVVEQLL---------------------------ARCQSPLALTT--LLTCLPFTSQDPLFLRAIEIGEKTLGPDHPDLATRLNNRAELLR 291
[Close]
BLAST of mRNA_F-serratus_M_contig7136.18348.1 vs. uniprot
Match: A0A6H5J9V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V8_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.470e-20
Identity = 53/97 (54.64%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:    1 GKYEEAEPLYKRSLAIDEKVYGPDHPEVATDLNNWARLFKTLPYTNSLLLS-----QGKLAEAEPLYERSQAIQEKVLGPEHPAVATVLNNRALLLQ 276
            GK+EEAE +Y+ S++I +K +GPDHPE+AT LNNWA L  +  +  +  L+     QGK   AEPLY RS AI+EKV GP+HP VAT LNNRA  L+
Sbjct:  339 GKFEEAETIYRHSMSILKKTHGPDHPEIATGLNNWAGLLSSQHHEANFSLAFRVPCQGKYDAAEPLYVRSLAIREKVYGPDHPEVATSLNNRAEFLR 435
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7136.18348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIY6_9PHAE1.290e-4062.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4D0_9PHAE1.920e-2944.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LI51_9PHAE2.410e-2841.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5H9_9PHAE1.320e-2556.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G180_ECTSI8.380e-2450.72TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIH9_9PHAE1.460e-2351.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJK0_9PHAE3.250e-2350.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHN5_9PHAE6.820e-2355.56CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JUC1_9PHAE6.290e-2139.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J9V8_9PHAE1.470e-2054.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7136contigF-serratus_M_contig7136:12720..15176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue5.6e-22
Seed eggNOG ortholog2880.D7G180
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons9
Model size1092
Cds size1092
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932190.8812966-CDS-F-serratus_M_contig7136:12719..128821622932190.8812966-CDS-F-serratus_M_contig7136:12719..12882Fucus serratus maleCDSF-serratus_M_contig7136 12720..12882 -
1690964191.7274225-CDS-F-serratus_M_contig7136:12719..128821690964191.7274225-CDS-F-serratus_M_contig7136:12719..12882Fucus serratus maleCDSF-serratus_M_contig7136 12720..12882 -
1622932190.8988936-CDS-F-serratus_M_contig7136:12976..130861622932190.8988936-CDS-F-serratus_M_contig7136:12976..13086Fucus serratus maleCDSF-serratus_M_contig7136 12977..13086 -
1690964191.7395856-CDS-F-serratus_M_contig7136:12976..130861690964191.7395856-CDS-F-serratus_M_contig7136:12976..13086Fucus serratus maleCDSF-serratus_M_contig7136 12977..13086 -
1622932190.916242-CDS-F-serratus_M_contig7136:13419..135391622932190.916242-CDS-F-serratus_M_contig7136:13419..13539Fucus serratus maleCDSF-serratus_M_contig7136 13420..13539 -
1690964191.756421-CDS-F-serratus_M_contig7136:13419..135391690964191.756421-CDS-F-serratus_M_contig7136:13419..13539Fucus serratus maleCDSF-serratus_M_contig7136 13420..13539 -
1622932190.9342694-CDS-F-serratus_M_contig7136:13635..136491622932190.9342694-CDS-F-serratus_M_contig7136:13635..13649Fucus serratus maleCDSF-serratus_M_contig7136 13636..13649 -
1690964191.7662222-CDS-F-serratus_M_contig7136:13635..136491690964191.7662222-CDS-F-serratus_M_contig7136:13635..13649Fucus serratus maleCDSF-serratus_M_contig7136 13636..13649 -
1622932190.974249-CDS-F-serratus_M_contig7136:13661..137821622932190.974249-CDS-F-serratus_M_contig7136:13661..13782Fucus serratus maleCDSF-serratus_M_contig7136 13662..13782 -
1690964191.7774138-CDS-F-serratus_M_contig7136:13661..137821690964191.7774138-CDS-F-serratus_M_contig7136:13661..13782Fucus serratus maleCDSF-serratus_M_contig7136 13662..13782 -
1622932190.9911969-CDS-F-serratus_M_contig7136:14114..142751622932190.9911969-CDS-F-serratus_M_contig7136:14114..14275Fucus serratus maleCDSF-serratus_M_contig7136 14115..14275 -
1690964191.789461-CDS-F-serratus_M_contig7136:14114..142751690964191.789461-CDS-F-serratus_M_contig7136:14114..14275Fucus serratus maleCDSF-serratus_M_contig7136 14115..14275 -
1622932191.0144355-CDS-F-serratus_M_contig7136:14358..144791622932191.0144355-CDS-F-serratus_M_contig7136:14358..14479Fucus serratus maleCDSF-serratus_M_contig7136 14359..14479 -
1690964191.8081992-CDS-F-serratus_M_contig7136:14358..144791690964191.8081992-CDS-F-serratus_M_contig7136:14358..14479Fucus serratus maleCDSF-serratus_M_contig7136 14359..14479 -
1622932191.0326884-CDS-F-serratus_M_contig7136:14811..149721622932191.0326884-CDS-F-serratus_M_contig7136:14811..14972Fucus serratus maleCDSF-serratus_M_contig7136 14812..14972 -
1690964191.820137-CDS-F-serratus_M_contig7136:14811..149721690964191.820137-CDS-F-serratus_M_contig7136:14811..14972Fucus serratus maleCDSF-serratus_M_contig7136 14812..14972 -
1622932191.0481033-CDS-F-serratus_M_contig7136:15055..151761622932191.0481033-CDS-F-serratus_M_contig7136:15055..15176Fucus serratus maleCDSF-serratus_M_contig7136 15056..15176 -
1690964191.8318965-CDS-F-serratus_M_contig7136:15055..151761690964191.8318965-CDS-F-serratus_M_contig7136:15055..15176Fucus serratus maleCDSF-serratus_M_contig7136 15056..15176 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7136.18348.1prot_F-serratus_M_contig7136.18348.1Fucus serratus malepolypeptideF-serratus_M_contig7136 12720..15176 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7136.18348.1

>prot_F-serratus_M_contig7136.18348.1 ID=prot_F-serratus_M_contig7136.18348.1|Name=mRNA_F-serratus_M_contig7136.18348.1|organism=Fucus serratus male|type=polypeptide|length=364bp
GKYEEAEPLYKRSLAIDEKVYGPDHPEVATDLNNWARLFKTLPYTNSLLL
SQGKLAEAEPLYERSQAIQEKVLGPEHPAVATVLNNRALLLQKQGKYEEA
EPLYKRSLAIDEKVYGPDHPEVATDLNNWARLFKTLPYTNPLLLSQGKLA
EAEPLYERSQAIREKALGPEHPDVAQSLNNRALLLQKQGKYEEAEPLYKR
SLAIDEKVYGPDHPEVATDLNNWARLFKNWTDFFPEAEPLYERSQAIREK
ALGPEHPDVALSLNNRASLLQKQGKYEEAEPLYKRSLAIDEKVYGPDHPE
VATDLNNWASTALHQPTTSHRASFLRPSHFMSGHRLYERRPWVRSTLMWP
CHSTTGRCCCRNR*
back to top

mRNA from alignment at F-serratus_M_contig7136:12720..15176-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7136.18348.1 ID=mRNA_F-serratus_M_contig7136.18348.1|Name=mRNA_F-serratus_M_contig7136.18348.1|organism=Fucus serratus male|type=mRNA|length=2457bp|location=Sequence derived from alignment at F-serratus_M_contig7136:12720..15176- (Fucus serratus male)
GGCAAGTACGAGGAGGCGGAACCGTTATACAAGCGCTCGCTTGCTATTGA
TGAGAAAGTTTACGGTCCTGACCACCCAGAGGTCGCTACAGATCTCAACA
ACTGGGCGAGGTTGTTTAAGAGTCATATATGAGATTGGACTGATTTTGTC
GTAAATTTCGTACGGTCCGTATTTCTGGGTGAAATATCTTGGTTTTTGTT
GGAGCACTGCCTTACACCAACTCACTACTTCTGTCACAGGGCAAGCTTGC
TGAGGCCGAGCCACTTTATGAGCGGTCACAGGCTATACAAGAGAAGGTCT
TGGGTCCGGAGCACCCTGCGGTTGCAACTGTGCTCAACAACCGGGCTTTG
TTGTTGCAGAAACAGGTGAGAGCCGTAATAATTTCCAACAAAGTTTTTAT
GGTGCTCAGTGGGTGTCATAGAACCGGGCGTCGTTGTTGGAGTCAGATGA
TGGCCATCATAATTTCCAGGGAACAGTCTTGTGGACAGGGGAAATCAATG
TGAATTTTGAATAATATTACTTGACGACGAAGCAGTACGAAGCGACGGAC
CCTCTCTATCTTGGAGCTATTGCGATTGAGATTGGGGAGAAGGGCGTGGT
TGTTGAGAATTTGTTCCTCCGCAGTTCGCTCCGCTAGCCTTGATCACACT
CCTATCGCGTTTTTCCCCTACAATAATATTAATATCAATATTTATAGGGC
AAGTACGAGGAGGCGGAACCGTTGTACAAGCGCTCGCTTGCTATTGATGA
GAAAGTTTACGGTCCTGACCACCCAGAGGTCGCTACAGATCTCAACAACT
GGGCGAGGTTGTTTAAGAGTCATATATGAGATTGGACTGATTTTGTCGTA
AATTTCGTACGGTCCGTATTTCTGGGTGAAATATCTTGGTTTTTGTTGGA
GCACTGCCTTACACCAACCCACTACTTCTGTCACAGGGCAAGCTTGCTGA
GGCCGAGCCACTTTATGAGCGGTCACAGGCTATACGAGAGAAGGCCTTGG
GTCCGGAGCACCCCGATGTGGCCCAGTCACTCAACAACCGGGCGTTGTTG
TTGCAGAAACAGGTGAGAGCCGTATGAATTTCCAGGGAAGTTTTTGTGGT
GCTCAGTGGGTGTCATAGGACCGGGCGTCGTTGTTGGAGTCAGGTGATGG
CCATCATAATTTCCAGGGAACAGTCTTGTGGACAGGGGAAATGAATGTGA
ATTTTGAATAATATTACTTGACGACGAAGCAGTACGAAGCGACGGACCCT
CTCTATCTTGGAGCTATTGCGATTGAGATTGGGGAGAAGGGCGTGGTTGT
TGAGAATTTGTTCCTCCGCAGTTCGCTCCGCTAGCCTTGGTCACACTCCT
ATCGCGTTTTTCCCCTACAATAATATCAATATCAATATTCATAGGGCAAG
TACGAGGAGGCGGAACCGTTGTACAAGCGCTCGCTTGCTATTGATGAGAA
AGTTTACGGTCCTGACCACCCAGAGGTCGCTACAGATCTCAACAACTGGG
CGAGGTTGTTTAAGAGTCATATATGAGATTGGACTGATTTTGTCGTAAAT
TTCGTACGGTCCGTATTTCTGGGTGAAATATCTTGGTTTTTGTTGGAGCA
CTGCCTTACACCAACCCACTACTTCTCACAGGGCAAGTTTCCTGAGGCCG
AGCCACTTTATGAGCGGTCACAGGCTATACGAGAGAAGGCCTTGGGTCCG
GAGCACCCCGATGTGGCCCTGTCACTCAACAACAGGGCTTCGTTGTTGCA
GAAACAGGTGAGACCCGTAAGAAATTTCCAGGGAAGTTTTTGTGGTGCTC
AGTGGGTGTCATCGGACCGGGCGTCGTTGTTGGAGTCAGGTGATGGCCAT
CATAATTTCCAGGGAACAGTCTTGTGGACAGGGGAAATGAATGTAAATTT
TGAATAATATTACTTGACGACGAAGCAGTACGAAGCGACGGACCCTCTCT
ATCTTGGAGCTATTGCGATTGAGATTGGGGAGAAGGGCGTGGCTGTTGAG
AATTTGTTCCTCCGCAGTTCGCTCCGCTAGCCTTGATCACACTCCTATCG
CGTTTTTCCCCTACAATAATATTAATATCAATATTTATAGGGTAAGTACG
AGGAGGCGGAACCGTTGTACAAGCGCTCGCTTGCTATTGATGAGAAAGTT
TACGGTCCTGACCACCCAGAGGTCGCTACAGATCTCAACAACTGGGCGAG
GTTGTTTAAGAGTCATATATGAGATTGGACTGATTTTGTCGTAAATTTCG
TACGGTCCGTATTTCTGGGTGAAATATCTTGGTTTTTGTTGGAGCACTGC
CTTACACCAACCCACTACTTCTCACAGGGCAAGTTTCCTCAGGCCGAGCC
ACTTTATGAGCGGTCACAGGCTATACGAGAGAAGGCCTTGGGTCCGGAGC
ACCCTGATGTGGCCCTGTCACTCAACAACCGGGCGTTGTTGTTGCAGAAA
CAGGTGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig7136:12720..15176-

>mRNA_F-serratus_M_contig7136.18348.1 ID=mRNA_F-serratus_M_contig7136.18348.1|Name=mRNA_F-serratus_M_contig7136.18348.1|organism=Fucus serratus male|type=CDS|length=2184bp|location=Sequence derived from alignment at F-serratus_M_contig7136:12720..15176- (Fucus serratus male)
GGCAAGTACGAGGAGGCGGAACCGTTATACAAGCGCTCGCTTGCTATTGA
TGAGAAAGTTTACGGTCCTGACCACCCAGAGGTCGCTACAGATCTCAACA
ACTGGGCGAGGTTGTTTAAGAGGCAAGTACGAGGAGGCGGAACCGTTATA
CAAGCGCTCGCTTGCTATTGATGAGAAAGTTTACGGTCCTGACCACCCAG
AGGTCGCTACAGATCTCAACAACTGGGCGAGGTTGTTTAAGACACTGCCT
TACACCAACTCACTACTTCTGTCACAGGGCAAGCTTGCTGAGGCCGAGCC
ACTTTATGAGCGGTCACAGGCTATACAAGAGAAGGTCTTGGGTCCGGAGC
ACCCTGCGGTTGCAACTGTGCTCAACAACCGGGCTTTGTTGTTGCAGAAA
CAGCACTGCCTTACACCAACTCACTACTTCTGTCACAGGGCAAGCTTGCT
GAGGCCGAGCCACTTTATGAGCGGTCACAGGCTATACAAGAGAAGGTCTT
GGGTCCGGAGCACCCTGCGGTTGCAACTGTGCTCAACAACCGGGCTTTGT
TGTTGCAGAAACAGGGCAAGTACGAGGAGGCGGAACCGTTGTACAAGCGC
TCGCTTGCTATTGATGAGAAAGTTTACGGTCCTGACCACCCAGAGGTCGC
TACAGATCTCAACAACTGGGCGAGGTTGTTTAAGAGGCAAGTACGAGGAG
GCGGAACCGTTGTACAAGCGCTCGCTTGCTATTGATGAGAAAGTTTACGG
TCCTGACCACCCAGAGGTCGCTACAGATCTCAACAACTGGGCGAGGTTGT
TTAAGACACTGCCTTACACCAACCCACTACTTCTGTCACAGGGCAAGCTT
GCTGAGGCCGAGCCACTTTATGAGCGGTCACAGGCTATACGAGAGAAGGC
CTTGGGTCCGGAGCACCCCGATGTGGCCCAGTCACTCAACAACCGGGCGT
TGTTGTTGCAGAAACAGCACTGCCTTACACCAACCCACTACTTCTGTCAC
AGGGCAAGCTTGCTGAGGCCGAGCCACTTTATGAGCGGTCACAGGCTATA
CGAGAGAAGGCCTTGGGTCCGGAGCACCCCGATGTGGCCCAGTCACTCAA
CAACCGGGCGTTGTTGTTGCAGAAACAGGGCAAGTACGAGGAGGCGGAAC
CGTTGTACAAGCGCTCGCTTGCTATTGATGAGAAAGTTTACGGTCCTGAC
CACCCAGAGGTCGCTACAGATCTCAACAACTGGGCGAGGTTGTTTAAGAG
GCAAGTACGAGGAGGCGGAACCGTTGTACAAGCGCTCGCTTGCTATTGAT
GAGAAAGTTTACGGTCCTGACCACCCAGAGGTCGCTACAGATCTCAACAA
CTGGGCGAGGTTGTTTAAGAATTGGACTGATTTTATTGGACTGATTTTTT
TCCTGAGGCCGAGCCACTTTATGAGCGGTCACAGGCTATACGAGAGAAGG
CCTTGGGTCCGGAGCACCCCGATGTGGCCCTGTCACTCAACAACAGGGCT
TCGTTGTTGCAGAAACAGTTTCCTGAGGCCGAGCCACTTTATGAGCGGTC
ACAGGCTATACGAGAGAAGGCCTTGGGTCCGGAGCACCCCGATGTGGCCC
TGTCACTCAACAACAGGGCTTCGTTGTTGCAGAAACAGGGTAAGTACGAG
GAGGCGGAACCGTTGTACAAGCGCTCGCTTGCTATTGATGAGAAAGTTTA
CGGTCCTGACCACCCAGAGGTCGCTACAGATCTCAACAACTGGGCGAGGG
TAAGTACGAGGAGGCGGAACCGTTGTACAAGCGCTCGCTTGCTATTGATG
AGAAAGTTTACGGTCCTGACCACCCAGAGGTCGCTACAGATCTCAACAAC
TGGGCGAGCACTGCCTTACACCAACCCACTACTTCTCACAGGGCAAGTTT
CCTCAGGCCGAGCCACTTTATGAGCGGTCACAGGCTATACGAGAGAAGGC
CTTGGGTCCGGAGCACCCTGATGTGGCCCTGTCACTCAACAACCGGGCGT
TGTTGTTGCAGAAACAGGTGACACTGCCTTACACCAACCCACTACTTCTC
ACAGGGCAAGTTTCCTCAGGCCGAGCCACTTTATGAGCGGTCACAGGCTA
TACGAGAGAAGGCCTTGGGTCCGGAGCACCCTGATGTGGCCCTGTCACTC
AACAACCGGGCGTTGTTGTTGCAGAAACAGGTGA
back to top