mRNA_F-serratus_M_contig713.18344.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig713.18344.1
Unique NamemRNA_F-serratus_M_contig713.18344.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig713.18344.1 vs. uniprot
Match: D7FRH1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH1_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.930e-12
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 SLSCKTSTHTYYRVYAGFMLLVYPIGIPLLYAIILRKNRHLLNPRLVSGA 150
            SLSCKT  H YYR+YAG M++VYPIGIPLLYA IL  NR  LNPR+ S A
Sbjct:  938 SLSCKTDKHMYYRIYAGIMIVVYPIGIPLLYAFILWINRDSLNPRVRSEA 987
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BLAST of mRNA_F-serratus_M_contig713.18344.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.940e-12
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 SLSCKTSTHTYYRVYAGFMLLVYPIGIPLLYAIILRKNRHLLNPRLVSGA 150
            SLSCKT  H Y+R+YAG M+LVYPIGIPLLYA IL  NR  LNPR+ S A
Sbjct: 1280 SLSCKTDKHMYFRIYAGIMILVYPIGIPLLYAFILWINRESLNPRVRSEA 1329
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BLAST of mRNA_F-serratus_M_contig713.18344.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 4.900e-12
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 SLSCKTSTHTYYRVYAGFMLLVYPIGIPLLYAIILRKNRHLLNPR 135
            SLSC T+THT+Y+VYAG M++VYPIGIPLLYA IL  NR  LNPR
Sbjct:  764 SLSCNTATHTWYKVYAGVMIVVYPIGIPLLYAFILWINRESLNPR 808
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BLAST of mRNA_F-serratus_M_contig713.18344.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 6.740e-12
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 SLSCKTSTHTYYRVYAGFMLLVYPIGIPLLYAIILRKNRHLLNPR 135
            SLSC T THT+Y+VYAG M++VYPIGIPLLYA IL  NR  LNPR
Sbjct: 1269 SLSCNTDTHTWYKVYAGIMIVVYPIGIPLLYAFILWINRDSLNPR 1313
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BLAST of mRNA_F-serratus_M_contig713.18344.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 3.210e-11
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 SLSCKTSTHTYYRVYAGFMLLVYPIGIPLLYAIILRKNRHLLNPRLVSGA 150
            S+ C T  H +Y+VYAG M++VYP+GIPLLYA IL +NR  LNPR+ +GA
Sbjct: 1252 SIQCHTDKHEWYKVYAGVMIMVYPVGIPLLYAFILWQNRESLNPRVKTGA 1301
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BLAST of mRNA_F-serratus_M_contig713.18344.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.090e-10
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    4 LSCKTSTHTYYRVYAGFMLLVYPIGIPLLYAIILRKNRHLLNPR 135
            +SCKT+ H +Y VYAG M+ VYPIGIPLLYA IL +NR  LNPR
Sbjct: 1336 ISCKTNKHAWYEVYAGVMIAVYPIGIPLLYAFILWRNRDSLNPR 1379
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BLAST of mRNA_F-serratus_M_contig713.18344.1 vs. uniprot
Match: A0A835YQE5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQE5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 5.840e-8
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 SLSCKTSTHTYYRVYAGFMLLVYPIGIPLLYAIILRKNR 117
            S+ C+TS H+ Y VYAGFM+LVYPIGIP LYA +LR++R
Sbjct:  142 SMKCQTSEHSAYMVYAGFMILVYPIGIPALYAWVLRQHR 180
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BLAST of mRNA_F-serratus_M_contig713.18344.1 vs. uniprot
Match: D8LRF9_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF9_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.470e-7
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 SLSCKTSTHTYYRVYAGFMLLVYPIGIPLLYAIILRKNRHLLNPR 135
            SL C T  H  YR YAG M+LVYPIGIPLLYA +L ++RH + P+
Sbjct: 1405 SLECYTPEHKLYRGYAGIMILVYPIGIPLLYAWLLFRHRHRIYPK 1449
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BLAST of mRNA_F-serratus_M_contig713.18344.1 vs. uniprot
Match: A0A6H5JUJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ2_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.000e-7
Identity = 23/48 (47.92%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 SLSCKTSTHTYYRVYAGFMLLVYPIGIPLLYAIILRKNRHLLNPRLVS 144
            S+SC    HT+Y+ YA  M+L+YPIG+P+L+A++L K R  LNP +++
Sbjct: 1361 SISCDHPDHTFYKAYAALMILLYPIGVPMLFAVLLLKRRDKLNPPVMT 1408
[Close]
BLAST of mRNA_F-serratus_M_contig713.18344.1 vs. uniprot
Match: A0A6H5JU65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU65_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.010e-7
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 SLSCKTSTHTYYRVYAGFMLLVYPIGIPLLYAIILRKNRHLLNPR 135
            SL C T  H  YR YAG M+LVYPIGIPLLYA +L ++RH + P+
Sbjct: 1700 SLECYTPEHKLYRGYAGIMILVYPIGIPLLYAWLLFQHRHRIYPK 1744
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig713.18344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRH1_ECTSI1.930e-1270.00Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JS31_9PHAE1.940e-1270.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCK8_9PHAE4.900e-1273.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRG6_ECTSI6.740e-1273.33Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
D7FRH4_ECTSI3.210e-1160.00Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FRH0_ECTSI2.090e-1068.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YQE5_9STRA5.840e-866.67Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LRF9_ECTSI1.470e-760.00Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JUJ2_9PHAE2.000e-747.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU65_9PHAE2.010e-760.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig713contigF-serratus_M_contig713:281192..281830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size276
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932190.4939144-CDS-F-serratus_M_contig713:281193..2814031622932190.4939144-CDS-F-serratus_M_contig713:281193..281403Fucus serratus maleCDSF-serratus_M_contig713 281194..281403 -
1690964191.5452943-CDS-F-serratus_M_contig713:281193..2814031690964191.5452943-CDS-F-serratus_M_contig713:281193..281403Fucus serratus maleCDSF-serratus_M_contig713 281194..281403 -
1622932190.5151224-CDS-F-serratus_M_contig713:281767..2818301622932190.5151224-CDS-F-serratus_M_contig713:281767..281830Fucus serratus maleCDSF-serratus_M_contig713 281768..281830 -
1690964191.5568144-CDS-F-serratus_M_contig713:281767..2818301690964191.5568144-CDS-F-serratus_M_contig713:281767..281830Fucus serratus maleCDSF-serratus_M_contig713 281768..281830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig713.18344.1prot_F-serratus_M_contig713.18344.1Fucus serratus malepolypeptideF-serratus_M_contig713 281194..281830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig713.18344.1

>prot_F-serratus_M_contig713.18344.1 ID=prot_F-serratus_M_contig713.18344.1|Name=mRNA_F-serratus_M_contig713.18344.1|organism=Fucus serratus male|type=polypeptide|length=91bp
SLSCKTSTHTYYRVYAGFMLLVYPIGIPLLYAIILRKNRHLLNPRLVSGA
RAEQGRQVEEGKEGDQEAEGVDQSNTGGQRRNYLPSLEEEE
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mRNA from alignment at F-serratus_M_contig713:281192..281830-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig713.18344.1 ID=mRNA_F-serratus_M_contig713.18344.1|Name=mRNA_F-serratus_M_contig713.18344.1|organism=Fucus serratus male|type=mRNA|length=639bp|location=Sequence derived from alignment at F-serratus_M_contig713:281192..281830- (Fucus serratus male)
AGCCTGTCATGTAAAACAAGCACTCATACTTACTACAGGGTCTACGCGGG
CTTCATGCTCCTGGTGGGTGACCTGCCTGTATTATCCGTTGATAAGGGGC
GCATATGTTATCAGCGATGATCTTGAGTCCCCGACCTAGAAGCTATGATA
TAGAATACTGCCGAGCGGCGATGTTTGGTATCCAGACGATAAGAGGTATG
TTATGTAACGATTTCCAAGTCCGAAGGGACGTGGTCAGAATATAGCCCAT
GTCAGGGAAAGTTTGATAGATCCCTTGGTGAAGATAAGGAGGTCGGCATC
CCCGGGTCACCATGCCTTTTTTACCTTTCTATCGTCCGTATTCATCATCT
GTCAAACCTTGGCGCACATATCACCCTCTCCAGCCCTGTACGCCTAACCT
CTTGGCCCTAACCTACTCGTCACACAGGTGTACCCTATCGGTATCCCCCT
ACTGTATGCTATCATTCTCCGGAAGAACCGGCACCTGCTCAACCCCAGGT
TGGTGTCTGGGGCAAGAGCCGAGCAAGGGCGGCAGGTTGAAGAAGGCAAA
GAGGGCGATCAAGAGGCAGAGGGCGTCGATCAAAGCAACACAGGTGGTCA
GAGAAGGAACTACCTGCCGTCCCTAGAGGAGGAAGAGCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig713:281192..281830-

>mRNA_F-serratus_M_contig713.18344.1 ID=mRNA_F-serratus_M_contig713.18344.1|Name=mRNA_F-serratus_M_contig713.18344.1|organism=Fucus serratus male|type=CDS|length=546bp|location=Sequence derived from alignment at F-serratus_M_contig713:281192..281830- (Fucus serratus male)
AGCCTGTCATGTAAAACAAGCACTCATACTTACTACAGGGTCTACGCGGG
CTTCATGCTCCTGAGCCTGTCATGTAAAACAAGCACTCATACTTACTACA
GGGTCTACGCGGGCTTCATGCTCCTGGTGTACCCTATCGGTATCCCCCTA
CTGTATGCTATCATTCTCCGGAAGAACCGGCACCTGCTCAACCCCAGGTT
GGTGTCTGGGGCAAGAGCCGAGCAAGGGCGGCAGGTTGAAGAAGGCAAAG
AGGGCGATCAAGAGGCAGAGGGCGTCGATCAAAGCAACACAGGTGGTCAG
AGAAGGAACTACCTGCCGTCCCTAGAGGAGGAAGAGGTGTACCCTATCGG
TATCCCCCTACTGTATGCTATCATTCTCCGGAAGAACCGGCACCTGCTCA
ACCCCAGGTTGGTGTCTGGGGCAAGAGCCGAGCAAGGGCGGCAGGTTGAA
GAAGGCAAAGAGGGCGATCAAGAGGCAGAGGGCGTCGATCAAAGCAACAC
AGGTGGTCAGAGAAGGAACTACCTGCCGTCCCTAGAGGAGGAAGAG
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