mRNA_F-serratus_M_contig712.18336.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig712.18336.1
Unique NamemRNA_F-serratus_M_contig712.18336.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig712.18336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig712contigF-serratus_M_contig712:332558..332891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size163
Cds size117
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig712.18336.1prot_F-serratus_M_contig712.18336.1Fucus serratus malepolypeptideF-serratus_M_contig712 332604..332891 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932188.8066425-UTR-F-serratus_M_contig712:332557..3326031622932188.8066425-UTR-F-serratus_M_contig712:332557..332603Fucus serratus maleUTRF-serratus_M_contig712 332558..332603 -
1690964190.831486-UTR-F-serratus_M_contig712:332557..3326031690964190.831486-UTR-F-serratus_M_contig712:332557..332603Fucus serratus maleUTRF-serratus_M_contig712 332558..332603 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932188.8187318-CDS-F-serratus_M_contig712:332603..3326391622932188.8187318-CDS-F-serratus_M_contig712:332603..332639Fucus serratus maleCDSF-serratus_M_contig712 332604..332639 -
1690964190.844943-CDS-F-serratus_M_contig712:332603..3326391690964190.844943-CDS-F-serratus_M_contig712:332603..332639Fucus serratus maleCDSF-serratus_M_contig712 332604..332639 -
1622932188.8320105-CDS-F-serratus_M_contig712:332810..3328911622932188.8320105-CDS-F-serratus_M_contig712:332810..332891Fucus serratus maleCDSF-serratus_M_contig712 332811..332891 -
1690964190.8549998-CDS-F-serratus_M_contig712:332810..3328911690964190.8549998-CDS-F-serratus_M_contig712:332810..332891Fucus serratus maleCDSF-serratus_M_contig712 332811..332891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig712.18336.1

>prot_F-serratus_M_contig712.18336.1 ID=prot_F-serratus_M_contig712.18336.1|Name=mRNA_F-serratus_M_contig712.18336.1|organism=Fucus serratus male|type=polypeptide|length=39bp
GYDHESSTHRHFISLLTFLLKKGVMMKVDYELRVQDQE*
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mRNA from alignment at F-serratus_M_contig712:332558..332891-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig712.18336.1 ID=mRNA_F-serratus_M_contig712.18336.1|Name=mRNA_F-serratus_M_contig712.18336.1|organism=Fucus serratus male|type=mRNA|length=334bp|location=Sequence derived from alignment at F-serratus_M_contig712:332558..332891- (Fucus serratus male)
GGGTATGATCACGAGAGCAGCACCCATCGGCATTTCATCTCCCTTCTGAC
TTTCCTTTTGAAAAAGGGTGTCATGATGAAGGTGGGTGATCGAGTTACAG
ACAACTACAAAATGGACGTGAAACTGAGGATCGAACGACAGTTCTGACTG
ACGACAGTGTCCATTATTACCTTAGGGCGAGGCAAAATACCTCGCGCGTG
GTTTTGTTTCTGGATTCGAAAATTTCCCATACAGCATAATTTGTTTTGAC
AGGTGGACTACGAGCTTCGAGTACAAGACCAAGAGTAGCATCTCTCCAGG
CCACCGTAAGAGACGACGAGGGCGTAATGTTCAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig712:332558..332891-

>mRNA_F-serratus_M_contig712.18336.1 ID=mRNA_F-serratus_M_contig712.18336.1|Name=mRNA_F-serratus_M_contig712.18336.1|organism=Fucus serratus male|type=CDS|length=234bp|location=Sequence derived from alignment at F-serratus_M_contig712:332558..332891- (Fucus serratus male)
GGGTATGATCACGAGAGCAGCACCCATCGGCATTTCATCTCCCTTCTGAC
TTTCCTTTTGAAAAAGGGTGTCATGATGAAGGGGTATGATCACGAGAGCA
GCACCCATCGGCATTTCATCTCCCTTCTGACTTTCCTTTTGAAAAAGGGT
GTCATGATGAAGGTGGACTACGAGCTTCGAGTACAAGACCAAGAGTAGGT
GGACTACGAGCTTCGAGTACAAGACCAAGAGTAG
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