mRNA_F-serratus_M_contig712.18334.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig712.18334.1 vs. uniprot
Match: A0A6H5JVR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVR9_9PHAE) HSP 1 Score: 420 bits (1079), Expect = 3.360e-132 Identity = 267/589 (45.33%), Postives = 344/589 (58.40%), Query Frame = 1
Query: 238 SKHPRGFISAYTESETMQALEDDTLLAVATFVDKRDLCTLGCVCRQFAPLPSFDFLWERHALAIVRSPQQLHAVTSALNLSSNRQLVEVFQRIGIPRGVLGLWRADGPTRSWSVHSSAPGPSLPHQDLAPAEVTQAQGELLRLSLVAGGFLCESVAPNGTSHCVFAIRASTTSKGNIKLGFFKLEDDSFATMGGHH--WTPGQSILEAFLERASAIPSAKERTPIRPAGETAFLLDRGDGQTRRYTMIEAPSISPQPALLHTEQGLRVRIAKARSLCGLWCAPYGSHGFEIIHISLDP---PSHDADVPGL----VERMESISEQKSVH--DRSSAVSTCSSGQITPGG-SCYTSAPATESSESGFGGSYSSMESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRLESDEDEEDVILRPVLDTRPSDGHDNKANLDTPLLYGVKVTGDINVPAGKASFVVDLEKEFDPNEELQADTRPVIIFLPTGAVMANLANRRGQIAFWCKGRGRINRIPGRWLPEWVDVDLIGYQPGSRYGFSVIFRQPAHVLRIIMDFERVFDSSEEWPRWPVA 1968
++ P+ A + +T + L+DDT+ VA+F DLC L VCR+F+PLP D LWE AL I+ S Q+H+ S L L+S RQLVE F IGIP GVLG W+A+ PT +W V G D + +A+GELLR++L AGGFLCES+AP+GT +F IR S T G IK+GFF LE +S T+GG + W PG S+ EA AIP + RTPIR +G AF L+R DG+T RY + AP S ++LCGLWCAPYGSHG EII +S DP P+ + + V ++ S+S+ + R +VS S+ ++T G S TS PAT++ S E+D XXXXXXXXXXXXXXXXXX R+ S + T S A++ + L +G KVTGD NVPAGK SFV+DL +FD +EEL++D+RPV+ FLPTGAVMANLANRR QI+ W KGRG+INR+PGRW PEWVDV+ + Y+ GSR FSVIFRQP +R++MDFER EEWP+W A
Sbjct: 42 AERPQQMPRAAADDKT-RLLDDDTINVVASFASCHDLCVLAEVCRRFSPLPFCDDLWELRALDILPSVPQVHSAMSQLKLTSFRQLVEAFTLIGIPGGVLGFWQAEAPTLAWDVQQQQQG----GLDGTTVQQPEARGELLRITLEAGGFLCESIAPSGTRRRIFTIRVSKTPTGRIKIGFFCLEKESALTIGGDNDSWVPGDSMAEALARYTFAIPGSTRRTPIRASGTKAFFLERNDGRTCRYVKLTAPPASSPGG---------AAAGAVKNLCGLWCAPYGSHGLEIIQLSTDPSCSPNEETAAAAVKAATVVKLSSLSQSWAGGRGGRRGSVSGSSTSRVTDGSESVCTSTPATDADGS---------EADSCDEAGGXXXXXXXXXXXXXXXXXXSSDGHGDIESVLDDGCLASIARRKGNS-------LHHADTATAGSGAGAGDASVPSQL-FGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRRQQISCWRKGRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQWSAA 599
BLAST of mRNA_F-serratus_M_contig712.18334.1 vs. uniprot
Match: D7FWS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS5_ECTSI) HSP 1 Score: 361 bits (926), Expect = 5.750e-111 Identity = 233/528 (44.13%), Postives = 292/528 (55.30%), Query Frame = 1
Query: 469 LNLSSNRQLVEVFQRIGIPRGVLGLWRADGPTRSWSVHSSAPGPSLPHQDLAPAEVTQAQGELLRLSLVAGGFLCESVAPNGTSHCVFAIRASTTSKGNIKLGFFKLEDDSFATMGGHH--WTPGQSILEAFLERASAIPSAKERTPIRPAGETAFLLDRGDGQTRRYTMIEAPSISPQPALLHTEQGLRVRIAKARSLCGLWCAPYGSHGFEIIHISLDPP-SHDADVPGL----------VERMESISEQKSVHDRSS---AVSTCSSGQITPGG-SCYTSAPATESSESGFGGSYSSMESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRLESDEDEEDVILRPVL----------DTRPSDGHDNKANLDTPL-LYGVKVTGDINVPAGKASFVVDLEKEFDPNEELQADTRPVIIFLPTGAVMANLANRRGQIAFWCKGRGRINRIPGRWLPEWVDVDLIGYQPGSRYGFSVIFRQPAHVLRIIMDFERVFDSSEEWPRWPVA 1968
L L+S RQLVE F IGIP GVLG W+A+ PT SW V G D A + +A+GELLR++L AGGFLCES+APNGT +F IR S T I +GFF LE +S T+GG W PG S+ EA A+P + +RTP+R +G AF L+R DG+T RY + AP S G+ ++LCGLWCAPYGSHG EII +S DP S D + V ++ S+S Q R +VS CS+ ++T G S TS PAT++ S G + S XXXXXXXXXXXXX +DV L + DT + + P L+G KVTGD NVPAGK SFV+DL +FD +EEL++D+RPV+ FLPTGAVMANLANRR QI+ W GRG+INR+PGRW PEWVDV+ + Y+ GSR FSVIFRQP +R++MDFER EEWP+W A
Sbjct: 4 LKLTSFRQLVEAFTLIGIPGGVLGFWQAEAPTLSWDVQQQQQG----GLDGATVQEREARGELLRITLEAGGFLCESIAPNGTRRRIFTIRVSKTPTDRINIGFFCLEKESSLTIGGDDDSWVPGDSMAEALARYTFAVPGSTKRTPMRASGTKAFFLERNDGRTCRYVKLTAPPAS--------SPGVVAAAGAVKNLCGLWCAPYGSHGLEIIQLSTDPSCSPDEETAAAXXXXXXKAATVAKLSSLS-QSWAGGRGGPRGSVSGCSTSRMTDGSESVCTSTPATDADGSEAGSCDEAGGSSEXXXXXXXXXXXXXSSDGDGDGDVESVL----------------------------DDVCLASIARRKGNSLHHADTGTAGSGAGAGDASVPSQLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRRQQISCWRNGRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQWSAA 490
BLAST of mRNA_F-serratus_M_contig712.18334.1 vs. uniprot
Match: A0A835ZDD8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD8_9STRA) HSP 1 Score: 117 bits (292), Expect = 5.580e-27 Identity = 56/133 (42.11%), Postives = 82/133 (61.65%), Query Frame = 1
Query: 1549 DNKANLDTPLLYGVKVTGDINVPAGKASFVVDLEKEFDPNEELQA-DTRPVIIFLPTGAVMANLANRRGQIAFWCKGRGRINRIPGRWLPEWVDVDLIGYQPGS------RYGFSVIFRQPAHVLRIIMDFER 1926
D A L G K+ GD +VPAG+ SF+VDL +++D + E+ A T V++F P GA + +L R +A WCKGRG++N RW P WVDVD + Y+ G+ Y +S+I+R+P H +RI++DF R
Sbjct: 1 DGAAPAQQLLFRGTKIVGDPHVPAGRCSFLVDLARDYDVDAEIAAASTGLVVVFGPNGAQVLDLGLRAPAVARWCKGRGQVNMRSDRWAPTWVDVDCLLYRTGAGAGGAAEYAYSIIWREPTHGIRILVDFRR 133
BLAST of mRNA_F-serratus_M_contig712.18334.1 vs. uniprot
Match: A0A835ZDM1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDM1_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 2.700e-14 Identity = 49/127 (38.58%), Postives = 70/127 (55.12%), Query Frame = 1
Query: 1576 LLYGVKVTGDINVPAGKA-------SFVVDLEKEFDPNEELQADTRPVIIFLPTGAVMANLANRRGQIAFWCKGRGRIN--RIPGRWLPEWVDVDLIGYQPGSRYGFSVIFRQPAHVLRIIMDFERV 1929
L+ G KV G N +G SF VDL + +D E+ A + V+ F+ GA + +L R IA WCKG+G +N G VDVD + Y P + +GFS+I+R+P H +RII+DF R+
Sbjct: 255 LMRGAKVVGSSNTNSGSTGSADRHWSFAVDLARGYDVAAEMAATSGLVVAFVAGGAHVIDLHARAPSIARWCKGQGHVNGGAAAGAARGAVVDVDCLVYGPRAAHGFSIIWREPKHGVRIIVDFARL 381 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig712.18334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig712.18334.1 >prot_F-serratus_M_contig712.18334.1 ID=prot_F-serratus_M_contig712.18334.1|Name=mRNA_F-serratus_M_contig712.18334.1|organism=Fucus serratus male|type=polypeptide|length=586bp MSGSKHPRGFISAYTESETMQALEDDTLLAVATFVDKRDLCTLGCVCRQFback to top mRNA from alignment at F-serratus_M_contig712:254712..257702- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig712.18334.1 ID=mRNA_F-serratus_M_contig712.18334.1|Name=mRNA_F-serratus_M_contig712.18334.1|organism=Fucus serratus male|type=mRNA|length=2991bp|location=Sequence derived from alignment at F-serratus_M_contig712:254712..257702- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig712:254712..257702- >mRNA_F-serratus_M_contig712.18334.1 ID=mRNA_F-serratus_M_contig712.18334.1|Name=mRNA_F-serratus_M_contig712.18334.1|organism=Fucus serratus male|type=CDS|length=3516bp|location=Sequence derived from alignment at F-serratus_M_contig712:254712..257702- (Fucus serratus male)back to top |