mRNA_F-serratus_M_contig7119.18331.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7119.18331.1
Unique NamemRNA_F-serratus_M_contig7119.18331.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7119.18331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7119contigF-serratus_M_contig7119:14318..17875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1145
Cds size1143
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7119.18331.1prot_F-serratus_M_contig7119.18331.1Fucus serratus malepolypeptideF-serratus_M_contig7119 14318..17874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932188.7221653-CDS-F-serratus_M_contig7119:14317..144761622932188.7221653-CDS-F-serratus_M_contig7119:14317..14476Fucus serratus maleCDSF-serratus_M_contig7119 14318..14476 +
1690964190.7879286-CDS-F-serratus_M_contig7119:14317..144761690964190.7879286-CDS-F-serratus_M_contig7119:14317..14476Fucus serratus maleCDSF-serratus_M_contig7119 14318..14476 +
1622932188.7398846-CDS-F-serratus_M_contig7119:14691..153481622932188.7398846-CDS-F-serratus_M_contig7119:14691..15348Fucus serratus maleCDSF-serratus_M_contig7119 14692..15348 +
1690964190.8016825-CDS-F-serratus_M_contig7119:14691..153481690964190.8016825-CDS-F-serratus_M_contig7119:14691..15348Fucus serratus maleCDSF-serratus_M_contig7119 14692..15348 +
1622932188.7569318-CDS-F-serratus_M_contig7119:17547..178741622932188.7569318-CDS-F-serratus_M_contig7119:17547..17874Fucus serratus maleCDSF-serratus_M_contig7119 17548..17874 +
1690964190.8178444-CDS-F-serratus_M_contig7119:17547..178741690964190.8178444-CDS-F-serratus_M_contig7119:17547..17874Fucus serratus maleCDSF-serratus_M_contig7119 17548..17874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7119.18331.1

>prot_F-serratus_M_contig7119.18331.1 ID=prot_F-serratus_M_contig7119.18331.1|Name=mRNA_F-serratus_M_contig7119.18331.1|organism=Fucus serratus male|type=polypeptide|length=381bp
KASAHRKGVPATPCEGGVQTGNGRLPVFGSVFDKTQEKDGQALLVVRKQD
ARKASALRMGQREIEAGNADECVKVQEDVTFSTPQAPELTARGEGGVLET
KVHLPSTPGKASAHRKGVPATPCEGGVQTGNGRLPGKADFPLVKCASPRI
DAPPDSRRSRMKPIDSSPPDNSCPEVLPRRFCPPTKAKGDQLAALPTAAV
AKASGGYATEVPFLSLLARGKDEDAGLDEAKATLILAKRSRAARAVFGSI
FDKTQEKDGQALLVDRKQDTRKASALRMGQREIKAGNADECVKVQEDVTF
STPQAPELTAQGGGDVLETKVHLPSTPGKASAHWKGVPATPCEGGVQTGN
GRLPVFGSVFDKTQEKDGQALLVVRKQDARK
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mRNA from alignment at F-serratus_M_contig7119:14318..17875+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7119.18331.1 ID=mRNA_F-serratus_M_contig7119.18331.1|Name=mRNA_F-serratus_M_contig7119.18331.1|organism=Fucus serratus male|type=mRNA|length=3558bp|location=Sequence derived from alignment at F-serratus_M_contig7119:14318..17875+ (Fucus serratus male)
AAGGCTTCCGCGCACCGGAAAGGTGTCCCGGCTACCCCATGTGAGGGTGG
CGTCCAGACTGGGAATGGTCGCCTTCCTGTCTTTGGGTCCGTTTTCGACA
AGACGCAGGAGAAAGATGGGCAAGCCTTGCTGGTCGTCAGGAAGCAGGAC
GCTCGAAAGGTAAGGATATTGGGCAAAATATTAAACGAGTGCATGGAAAA
TTTCAGGTGGAGTTTCTTGTCACTAGTAGGGGTATTGGAAGGTGTTTGGC
AGTGATGCGAAGTTGTTGTTGGGGGAGTGTAATGTGCGCAAAAAAAGCGA
CGAAAATGTTGAAGCCGCTCTGCAAGAAAATAATGTGCAAACCTGTTTAG
TCGACTCCCCTGATGTCATCACAGGCCTCTGCTCTGCGGATGGGTCAGCG
GGAGATTGAAGCTGGCAACGCGGACGAGTGCGTCAAGGTACAAGAGGACG
TGACTTTTTCTACCCCACAAGCTCCCGAGCTAACAGCACGGGGCGAGGGT
GGCGTTTTGGAAACCAAAGTCCACCTCCCGTCCACACCAGGGAAGGCTTC
CGCGCACCGGAAAGGTGTCCCGGCTACCCCATGTGAGGGTGGCGTCCAGA
CTGGGAATGGTCGCCTTCCTGGGAAGGCGGATTTCCCGCTTGTAAAGTGT
GCCTCCCCTCGTATAGATGCCCCGCCTGATTCGAGACGGTCGAGAATGAA
ACCGATTGACTCCTCCCCTCCGGACAACAGTTGTCCGGAAGTACTTCCGC
GAAGGTTTTGTCCACCGACCAAAGCCAAGGGAGATCAATTGGCAGCCCTA
CCTACAGCCGCAGTCGCGAAAGCTAGCGGTGGTTATGCGACGGAGGTACC
TTTTCTCTCGCTGTTGGCTCGCGGAAAGGACGAGGACGCCGGTCTCGATG
AAGCTAAGGCAACATTGATCTTGGCCAAGCGAAGTCGGGCTGCAAGAGCT
GTCTTCGGGTCCATTTTCGACAAGACGCAGGAGAAAGATGGGCAAGCCTT
GCTGGTCGACAGGAAGCAGGACACTCGAAAGGTAAGAGTATTGGTCAATA
TCAAACGATTATATAGTAAATTTCAGGTGGAGTTTTTTGGGGAGGTTTTG
ACACTAGCAGGGGTGTCGAAAGGTGTTCGGCAGTGATGCGAAGCTGTTGT
TGGGGGAGTGCAATGTGCGCAAAAAAAGCGACGAAATGTTGAAGCCGCTC
TGCAAGAGAATAATGTGCATACCTGGTACCTGTTTAGTCGACTCCCCTGA
TGTCATCACAGGCCTCTGCTCTGCGGATGGGTCAGCGGGAGATTAAAGCT
GGCAACGCGGACGAGTGCGTCAAGGTACAAGAGGACGTGACTTTTTCTAC
CCCGCAAGCTCCCGAGCTAACAGCACAGGGCGAGGGTGACGTTTTGGAAA
CCAAAGTCCACCTCCCGTCCACACCAGGGAAGGCTTCCGCGCACTGGAAA
GGTGTCCCGGCTACCCCATGTGAGGGTGGCGTCCAGACTGGGAATGGTCG
CCTTCCTGTCTTTGGGTCCGTTTTCGACAAGACGCAGGAGAAAGATGGGC
AAGCCTTGCTGGTCGTCAGGAAGCAGGACGCTCGAAAGGTAAGGATATTG
GGCAAAATATTAAACGAGTGCATGGAAAATTTCAGGTGGAGTTTCTTGTC
ACTAGTAGGGGTATTGGAAGGTGTTTGGCAGTGATGCGAAGTTGTTGTTG
GGGGAGTGTAATGTGCGCAAAAAAGCGACGAAAATGTTGAAGCCGCTCTG
CAAGAAAATAATGTGCAAACCTGTTTAGTCGACTCCCCTGATGTCATCAC
AGGCCTCTGCTCTGCGGATGGGTCAGCGGGAGATTGAAGCTGGCAACGCG
GACGAGTGCGTCAAGGTACAAGAGGACGTGACTTTTTCTACCCCACAAGC
TCCTGAGCTAACAGCACAGGGCGAGGGTGACGTTTTGGAAACCAAAGTCC
ACCTCCCGTCCACACCAGGGAAGGCTTCCGCGCACCGGAAAGGTGTCCCG
GCTACCCCATGTGAGGGTGGCGTCCAGACTGGGAATGGTCGCCTTCCTGT
CTTTGGGTCCGTTTTCGACAAGACGCAGGAGAAAGATGGGCAAGCCTTGC
TGGTCGTCAGGAAGCAGGACGCTCGAAAGGTAAGGATATTGGGCAAAATA
TTAAACGAGTGCATGGAAAATTTCAGGTGGAGTTTCTTGTCACTAGTAGG
GGTATTGGAAGGTGTTTGGCAGTGATGCGAAGTTGTTGTTGGGGGAGTGT
AATGTGCGCAAAAAAAGCGACGAAAATGTTGAAGCCGCTCTGCAAGAAAA
TAATGTGCAAACCTGTTTAGTCGACTCCCCTGATGTCATCACAGGCCTCT
GCTCTGCGGATGGGTCAGCGGGAGATTGAAGCTGGCAACGCGGACGAGTG
CGTCAAGGTACAAGAGGACGTGACTTTTTCTACCCCACAAGCTCCCGAGC
TAACAGCACGGGGCGAGGGTGGCGTTTTGGAAACCAAAGTCCACCTCCCG
TCCACACCAGGGAAGGCTTCCGCGCACCGGAAAGGTGTCCCGGCTACCCC
ATGTGAGGGTGGCGTCCAGACTGGGAATGGTCGCCTTCCTGGGAAGGCGG
ATTTCCCGCTTGTAAAGTGTGCCTCCCCTCGTATAGATGCCCCGCCTGAT
TCGAGACGGTCGAGAATGAAACCGATTGACTCCTCCCCTCCGGACAACAG
TTGTCCGGAAGTACTTCCGCGAAGGTTTTGTCCACCGACCAAAGCCAAGG
GAGATCAATTGGCAGCCCTACCTACAGCCGCAGTCGCGAAAGCTAGCGGT
GGTTATGCGACGGAGGTACCTTTTCTCTCGCTGTTGGCTCGCGGAAAGGA
CGAGGACGCCGGTCTCGATGAAGCTAAGGCAACATTGATCTTGGCCAAGC
GAAGTCGGGCTGCAAGAGCTGTCTTCGGGTCCATTTTCGACAAGACGCAG
GAGAAAGATGGGCAAGCCTTGCTGGTCGACAGGAAGCAGGACACTCGAAA
GGTAAGAGTATTGGTCAATATCAAACGATTATATAGTAAATTTCAGGTGG
AGTTTTTTGGGGAGGTTTTGACACTAGCAGGGGTGTCGAAAGGTGTTCGG
CAGTGATGCGAAGCTGTTGTTGGGGAGTGCAATGTGCGCAAAAAAAGCGA
CGAAATGTTGAAGCCGCTCTGCAAGAGAATAATGTGCATACCTGGTACCT
GTTTAGTCGACTCCCCTGATGTCATCACAGGCCTCTGCTCTGCGGATGGG
TCAGCGGGAGATTAAAGCTGGCAACGCGGACGAGTGCGTCAAGGTACAAG
AGGACGTGACTTTTTCTACCCCGCAAGCTCCCGAGCTAACAGCACAGGGC
GGGGGTGACGTTTTGGAAACCAAAGTCCACCTCCCGTCCACACCAGGGAA
GGCTTCCGCGCACTGGAAAGGTGTCCCGGCTACCCCATGTGAGGGTGGCG
TCCAGACTGGGAATGGTCGCCTTCCTGTCTTTGGGTCCGTTTTCGACAAG
ACGCAGGAGAAAGATGGGCAAGCCTTGCTGGTCGTCAGGAAGCAGGACGC
TCGAAAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7119:14318..17875+

>mRNA_F-serratus_M_contig7119.18331.1 ID=mRNA_F-serratus_M_contig7119.18331.1|Name=mRNA_F-serratus_M_contig7119.18331.1|organism=Fucus serratus male|type=CDS|length=2286bp|location=Sequence derived from alignment at F-serratus_M_contig7119:14318..17875+ (Fucus serratus male)
AAGGCTTCCGCGCACCGGAAAGGTGTCCCGGCTACCCCATGTGAGGGTGG
CGTCCAGACTGGGAATGGTCGCCTTCCTGTCTTTGGGTCCGTTTTCGACA
AGACGCAGGAGAAAGATGGGCAAGCCTTGCTGGTCGTCAGGAAGCAGGAC
GCTCGAAAGAAGGCTTCCGCGCACCGGAAAGGTGTCCCGGCTACCCCATG
TGAGGGTGGCGTCCAGACTGGGAATGGTCGCCTTCCTGTCTTTGGGTCCG
TTTTCGACAAGACGCAGGAGAAAGATGGGCAAGCCTTGCTGGTCGTCAGG
AAGCAGGACGCTCGAAAGGCCTCTGCTCTGCGGATGGGTCAGCGGGAGAT
TGAAGCTGGCAACGCGGACGAGTGCGTCAAGGTACAAGAGGACGTGACTT
TTTCTACCCCACAAGCTCCCGAGCTAACAGCACGGGGCGAGGGTGGCGTT
TTGGAAACCAAAGTCCACCTCCCGTCCACACCAGGGAAGGCTTCCGCGCA
CCGGAAAGGTGTCCCGGCTACCCCATGTGAGGGTGGCGTCCAGACTGGGA
ATGGTCGCCTTCCTGGGAAGGCGGATTTCCCGCTTGTAAAGTGTGCCTCC
CCTCGTATAGATGCCCCGCCTGATTCGAGACGGTCGAGAATGAAACCGAT
TGACTCCTCCCCTCCGGACAACAGTTGTCCGGAAGTACTTCCGCGAAGGT
TTTGTCCACCGACCAAAGCCAAGGGAGATCAATTGGCAGCCCTACCTACA
GCCGCAGTCGCGAAAGCTAGCGGTGGTTATGCGACGGAGGTACCTTTTCT
CTCGCTGTTGGCTCGCGGAAAGGACGAGGACGCCGGTCTCGATGAAGCTA
AGGCAACATTGATCTTGGCCAAGCGAAGTCGGGCTGCAAGAGCTGTCTTC
GGGTCCATTTTCGACAAGACGCAGGAGAAAGATGGGCAAGCCTTGCTGGT
CGACAGGAAGCAGGACACTCGAAAGGCCTCTGCTCTGCGGATGGGTCAGC
GGGAGATTGAAGCTGGCAACGCGGACGAGTGCGTCAAGGTACAAGAGGAC
GTGACTTTTTCTACCCCACAAGCTCCCGAGCTAACAGCACGGGGCGAGGG
TGGCGTTTTGGAAACCAAAGTCCACCTCCCGTCCACACCAGGGAAGGCTT
CCGCGCACCGGAAAGGTGTCCCGGCTACCCCATGTGAGGGTGGCGTCCAG
ACTGGGAATGGTCGCCTTCCTGGGAAGGCGGATTTCCCGCTTGTAAAGTG
TGCCTCCCCTCGTATAGATGCCCCGCCTGATTCGAGACGGTCGAGAATGA
AACCGATTGACTCCTCCCCTCCGGACAACAGTTGTCCGGAAGTACTTCCG
CGAAGGTTTTGTCCACCGACCAAAGCCAAGGGAGATCAATTGGCAGCCCT
ACCTACAGCCGCAGTCGCGAAAGCTAGCGGTGGTTATGCGACGGAGGTAC
CTTTTCTCTCGCTGTTGGCTCGCGGAAAGGACGAGGACGCCGGTCTCGAT
GAAGCTAAGGCAACATTGATCTTGGCCAAGCGAAGTCGGGCTGCAAGAGC
TGTCTTCGGGTCCATTTTCGACAAGACGCAGGAGAAAGATGGGCAAGCCT
TGCTGGTCGACAGGAAGCAGGACACTCGAAAGGCCTCTGCTCTGCGGATG
GGTCAGCGGGAGATTAAAGCTGGCAACGCGGACGAGTGCGTCAAGGTACA
AGAGGACGTGACTTTTTCTACCCCGCAAGCTCCCGAGCTAACAGCACAGG
GCGGGGGTGACGTTTTGGAAACCAAAGTCCACCTCCCGTCCACACCAGGG
AAGGCTTCCGCGCACTGGAAAGGTGTCCCGGCTACCCCATGTGAGGGTGG
CGTCCAGACTGGGAATGGTCGCCTTCCTGTCTTTGGGTCCGTTTTCGACA
AGACGCAGGAGAAAGATGGGCAAGCCTTGCTGGTCGTCAGGAAGCAGGAC
GCTCGAAAGGCCTCTGCTCTGCGGATGGGTCAGCGGGAGATTAAAGCTGG
CAACGCGGACGAGTGCGTCAAGGTACAAGAGGACGTGACTTTTTCTACCC
CGCAAGCTCCCGAGCTAACAGCACAGGGCGGGGGTGACGTTTTGGAAACC
AAAGTCCACCTCCCGTCCACACCAGGGAAGGCTTCCGCGCACTGGAAAGG
TGTCCCGGCTACCCCATGTGAGGGTGGCGTCCAGACTGGGAATGGTCGCC
TTCCTGTCTTTGGGTCCGTTTTCGACAAGACGCAGGAGAAAGATGGGCAA
GCCTTGCTGGTCGTCAGGAAGCAGGACGCTCGAAAG
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