mRNA_F-serratus_M_contig7112.18329.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig7112.18329.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE) HSP 1 Score: 308 bits (788), Expect = 4.280e-82 Identity = 143/194 (73.71%), Postives = 167/194 (86.08%), Query Frame = 3
Query: 105 RLSVLRVWKDGPGDKPLLEQNYLWSLFARHTTMTLIILYLVYSSVSTVVFQTFACEDLDEIGKSYLRADFRIECNTSKHYAYQIYAAIMICVYPLGIPAAFWYFLERQRSRLNPPTDKNLEDQRGLDYVLQEKMDKRKDDPTVAPTSFLWAAYYPNRYYFEVCECLRRLLLTGVLVFVAPDTGVQVAYGCLFPF 686
R S RVW++GPGD+ +EQN+LW LFARHTTM LIILYLVYS VSTVVFQ FACED EIGKS+LRADFRIEC+T KH Y+IYAA+MIC+YPLGIPAAFWYFL RQRSR+NPPTDK L+DQRG +V++EKM++R+ D +APTSFLW AYYPNRYY+EV EC+RRLLLTG+LVFV PDT QVA+GC+F F
Sbjct: 1592 RPSARRVWRNGPGDESDIEQNHLWELFARHTTMMLIILYLVYSQVSTVVFQAFACEDFPEIGKSFLRADFRIECDTPKHDNYKIYAAVMICIYPLGIPAAFWYFLRRQRSRINPPTDKGLKDQRGRKHVVEEKMNQRRTDRAIAPTSFLWNAYYPNRYYYEVFECMRRLLLTGLLVFVVPDTPGQVAFGCVFAF 1785
BLAST of mRNA_F-serratus_M_contig7112.18329.1 vs. uniprot
Match: A0A6H5JI42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI42_9PHAE) HSP 1 Score: 286 bits (732), Expect = 1.280e-78 Identity = 136/194 (70.10%), Postives = 159/194 (81.96%), Query Frame = 3
Query: 105 RLSVLRVWKDGPGDKPLLEQNYLWSLFARHTTMTLIILYLVYSSVSTVVFQTFACEDLDEIGKSYLRADFRIECNTSKHYAYQIYAAIMICVYPLGIPAAFWYFLERQRSRLNPPTDKNLEDQRGLDYVLQEKMDKRKDDPTVAPTSFLWAAYYPNRYYFEVCECLRRLLLTGVLVFVAPDTGVQVAYGCLFPF 686
R S RVW+ GPGD+ +EQN+LW LFARHTTM LIILYLVYS VSTVVFQ FACED EIGKS+LRADFRIEC+ KHY Y+IYAA+MIC+YPLGIP AF YFL RQ SR+NPPTDK L++QRG + EKM++R+ D +APTSFLW AYYP+RYY+EV EC RRLLLTG+LVF+ PDT QVA+GC+F F
Sbjct: 326 RPSARRVWRSGPGDESDIEQNHLWELFARHTTMMLIILYLVYSQVSTVVFQAFACEDFPEIGKSFLRADFRIECDKPKHYTYKIYAAVMICIYPLGIPGAFCYFLARQMSRINPPTDKGLKNQRGRKHDA-EKMNQRRTDRAIAPTSFLWNAYYPSRYYYEVIECFRRLLLTGLLVFLVPDTPGQVAFGCVFAF 518
BLAST of mRNA_F-serratus_M_contig7112.18329.1 vs. uniprot
Match: D7G0A8_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A8_ECTSI) HSP 1 Score: 293 bits (751), Expect = 5.280e-78 Identity = 139/194 (71.65%), Postives = 163/194 (84.02%), Query Frame = 3
Query: 105 RLSVLRVWKDGPGDKPLLEQNYLWSLFARHTTMTLIILYLVYSSVSTVVFQTFACEDLDEIGKSYLRADFRIECNTSKHYAYQIYAAIMICVYPLGIPAAFWYFLERQRSRLNPPTDKNLEDQRGLDYVLQEKMDKRKDDPTVAPTSFLWAAYYPNRYYFEVCECLRRLLLTGVLVFVAPDTGVQVAYGCLFPF 686
R S RVW++GPGD+ +EQN+LW LFARHTTM LIILYLVY+ VSTVVFQ FACED EIGKS+LRADFRIEC+T KH Y+ YAA MIC+YPLGIPAAF YFL RQ SR+NPPTDK L++QRG +V+ EKM++R+ D +APTSFLW AYYPNRYY+EV ECLRRLLLTG+LVF+APDT QVA+GC+F F
Sbjct: 1126 RPSARRVWRNGPGDESDIEQNHLWELFARHTTMMLIILYLVYTQVSTVVFQAFACEDFPEIGKSFLRADFRIECDTPKHDNYKTYAAAMICIYPLGIPAAFCYFLTRQMSRINPPTDKGLKNQRGRKHVVTEKMNQRRTDRAIAPTSFLWNAYYPNRYYYEVFECLRRLLLTGLLVFLAPDTPGQVAFGCVFAF 1319
BLAST of mRNA_F-serratus_M_contig7112.18329.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI) HSP 1 Score: 282 bits (721), Expect = 7.420e-74 Identity = 134/194 (69.07%), Postives = 159/194 (81.96%), Query Frame = 3
Query: 105 RLSVLRVWKDGPGDKPLLEQNYLWSLFARHTTMTLIILYLVYSSVSTVVFQTFACEDLDEIGKSYLRADFRIECNTSKHYAYQIYAAIMICVYPLGIPAAFWYFLERQRSRLNPPTDKNLEDQRGLDYVLQEKMDKRKDDPTVAPTSFLWAAYYPNRYYFEVCECLRRLLLTGVLVFVAPDTGVQVAYGCLFPF 686
R S RVW++GPGD+ LEQN+LW LFARHTTM LIILYLVY+ VSTVVFQ FACED EIGKS+LRADFRIEC+T KH Y+IYAA+MIC+ +FWYFL RQRSR+NPPTDK L+DQRG +V+ EKM++R+ D +APTSFLW AYYPNRYY+EV EC+RRLLLTG+LVF+ PDT QVA+GC+F F
Sbjct: 1393 RPSARRVWRNGPGDESDLEQNHLWELFARHTTMMLIILYLVYTQVSTVVFQAFACEDFPEIGKSFLRADFRIECDTPKHDNYKIYAAVMICI-------SFWYFLTRQRSRINPPTDKGLKDQRGRKHVVDEKMNQRRTDRAIAPTSFLWNAYYPNRYYYEVFECMRRLLLTGLLVFLVPDTPGQVAFGCVFAF 1579
BLAST of mRNA_F-serratus_M_contig7112.18329.1 vs. uniprot
Match: D7G119_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G119_ECTSI) HSP 1 Score: 258 bits (658), Expect = 3.130e-66 Identity = 127/226 (56.19%), Postives = 162/226 (71.68%), Query Frame = 3
Query: 30 TSACVVSAEEGGKTSRTTSR---------GFLSKRLSVLRVWKDGPGDKPLLEQNYLWSLFARHTTMTLIILYLVYSSVSTVVFQTFACEDLDEIGKSYLRADFRIECNTSKHYAYQIYAAIMICVYPLGIPAAFWYFLERQRSRLNPPTDKNLEDQRGLDYVLQEKMDKRKDDPTVAPTSFLWAAYYPNRYYFEVCECLRRLLLTGVLVFVAPDTGVQVAYGCLF 680
TS V E G+ +SR G ++ SV + + G + EQ LW LFARHTT+ LI+LYLVY+ +STVVFQTF+CEDL EIGKSYLRADFRIEC+T +H Y+ YA +MIC+YPLGIPA F+YFL RQRSR+NPPTD+ L+ +RG +V ++KM R D ++APTSFLW+AY+P YY+EV EC+RRLLLTG+LVF+ PDT QVA+ C+F
Sbjct: 1130 TSGSRVGEVEEGRVQGASSRSMASVMAIGGATARAQSVRNLLRAKSGQQKNPEQERLWGLFARHTTIMLIVLYLVYTQISTVVFQTFSCEDLPEIGKSYLRADFRIECDTQRHTLYKAYAGVMICIYPLGIPAIFFYFLVRQRSRINPPTDEALKKRRGGRHVAEQKMTVRDQDQSIAPTSFLWSAYFPTCYYYEVFECIRRLLLTGILVFLVPDTPGQVAFSCIF 1355
BLAST of mRNA_F-serratus_M_contig7112.18329.1 vs. uniprot
Match: A0A6H5K4A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A5_9PHAE) HSP 1 Score: 256 bits (655), Expect = 8.350e-66 Identity = 125/213 (58.69%), Postives = 155/213 (72.77%), Query Frame = 3
Query: 42 VVSAEEGGKTSRTTSRGFLSKRLSVLRVWKDGPGDKPLLEQNYLWSLFARHTTMTLIILYLVYSSVSTVVFQTFACEDLDEIGKSYLRADFRIECNTSKHYAYQIYAAIMICVYPLGIPAAFWYFLERQRSRLNPPTDKNLEDQRGLDYVLQEKMDKRKDDPTVAPTSFLWAAYYPNRYYFEVCECLRRLLLTGVLVFVAPDTGVQVAYGCLF 680
V A G TS T + G ++ SV + GD+ EQ LW LFARHTTM LI+LYLVY+ +STVVFQTFACE L EIGK YLRADF IEC+T +H Y+ YA +M+C+YPLGIPA F YFL RQRSR+NPPTD+ L+ +RG +V++ KM R D ++APTSFLW AY+P YY+EV EC+RRLLLTG+LVF+ PDT QVA+ C+F
Sbjct: 1376 VQGACSGSTTSVTANSGAAAREPSVRSALRAKSGDRKNPEQERLWGLFARHTTMMLIVLYLVYTQISTVVFQTFACEHLPEIGKRYLRADFGIECDTQRHTLYKAYAGVMMCIYPLGIPAVFLYFLLRQRSRINPPTDEALKKRRGGRHVVERKMTVRDKDQSIAPTSFLWNAYFPKCYYYEVFECIRRLLLTGILVFLVPDTPGQVAFSCIF 1588
BLAST of mRNA_F-serratus_M_contig7112.18329.1 vs. uniprot
Match: D8LRF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF6_ECTSI) HSP 1 Score: 168 bits (426), Expect = 3.780e-40 Identity = 83/186 (44.62%), Postives = 122/186 (65.59%), Query Frame = 3
Query: 159 EQNYLWSLFARHTTMTLIILYLVYSSVSTVVFQTFACEDLDEIGKSYLRADFRIECNTSKHYAYQIYAAIMICVYPLGIPAAFWYFLERQRSRLNPPTD-------------KNLEDQRGLDYVLQEKMDKRKDDPTVAPTSFLWAAYYPNRYYFEVCECLRRLLLTGVLVFVAPDTGVQVAYGCL 677
+Q + + ++TT+ L + + +YS+VSTV+FQTF+C++L+++GKSYLRAD+ I+C++ +H A+++YA +MI VYP+GIP AF L R+RS +NPP D ED+R Y + D+R D +A T+FLW AY P YY+EV EC RRLLLTG LVF+ P++ Q A C+
Sbjct: 20 DQGVMRRVQDKYTTVALTMAFFLYSTVSTVIFQTFSCDELEDVGKSYLRADYGIDCDSDRHKAFKLYAGLMILVYPIGIPVAFAVMLWRKRSMINPPKDILSAARVLHGSNPSQHEDER---YGRPSEPDQRLSDRRIAQTAFLWRAYRPAAYYYEVLECFRRLLLTGCLVFILPNSAGQAAVACV 202
BLAST of mRNA_F-serratus_M_contig7112.18329.1 vs. uniprot
Match: A0A6H5JU27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU27_9PHAE) HSP 1 Score: 164 bits (416), Expect = 4.060e-38 Identity = 81/176 (46.02%), Postives = 116/176 (65.91%), Query Frame = 3
Query: 189 RHTTMTLIILYLVYSSVSTVVFQTFACEDLDEIGKSYLRADFRIECNTSKHYAYQIYAAIMICVYPLGIPAAFWYFLERQRSRLNPPTD-------------KNLEDQRGLDYVLQEKMDKRKDDPTVAPTSFLWAAYYPNRYYFEVCECLRRLLLTGVLVFVAPDTGVQVAYGCL 677
++TT+ L + + +YS+VSTV+FQTF+C++L+++ KSYLRAD+ I+C++ +H A+++YA MI VYP+GIP AF L R+RS +NPP D ED+R Y + D+R D +A T+FLW AY P YY+EV EC RRLLLTG LVF+ P++ Q A C+
Sbjct: 180 KYTTVALTMAFFLYSTVSTVIFQTFSCDELEDLDKSYLRADYAIDCDSDRHKAFKLYAGFMILVYPIGIPVAFAVMLWRKRSMINPPKDILSAARVLHGSNPSQHEDER---YGRPSEPDQRLSDRRIAQTAFLWRAYRPAAYYYEVLECFRRLLLTGCLVFILPNSAGQAAVACV 352
BLAST of mRNA_F-serratus_M_contig7112.18329.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI) HSP 1 Score: 163 bits (412), Expect = 9.680e-37 Identity = 83/193 (43.01%), Postives = 121/193 (62.69%), Query Frame = 3
Query: 135 GPGDKPLLEQNYLWSLFARHTTMTLIILYLVYSSVSTVVFQTFACEDLDEIGKSYLRADFRIECNTSKHYAYQIYAAIMICVYPLGIPAAFWYFLERQRSRLNP----PTDKNLEDQ-----RGLDYVLQEKMDKRKDDPTVAPTSFLWAAYYPNRYYFEVCECLRRLLLTGVLVFVAPDTGVQVAYGCLFPF 686
G G +L + WS RH L++ +LV++S ST+VF+TFAC+D G+S+LRAD+ I C T+KH Y++YA +MI VYP+GIP + + L R R LNP T L+ + R + LQ++++KR+ +P + P+ FLW + P+ YY+EV EC RR+LLTG L+F+AP T Q A C+F F
Sbjct: 1278 GIGSAGVLARRAAWS---RHMAAGLLLTFLVFTSSSTIVFKTFACDDEAVEGESFLRADYGISCKTNKHAWYEVYAGVMIAVYPIGIPLLYAFILWRNRDSLNPRAYYSTGLELDGEMSEGPRETEEELQDRLEKRRQNPDLVPSMFLWKDFGPDMYYYEVIECGRRILLTGALIFIAPHTVAQAAIACMFAF 1467
BLAST of mRNA_F-serratus_M_contig7112.18329.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI) HSP 1 Score: 161 bits (407), Expect = 3.680e-36 Identity = 96/246 (39.02%), Postives = 139/246 (56.50%), Query Frame = 3
Query: 21 HDSTSACVVSAEEGGKTSRTTSRGFLSKRLS-VLRVW----KDGPGDKPLLEQNYLWSLFARHTTMTLIILYLVYSSVSTVVFQTFACEDLDEIGKSYLRADFRIECNTSKHYAYQIYAAIMICVYPLGIPAAFWYFLERQRSRLNP--------------PTDK-----NLEDQRGLDYVLQEKMDKRKDDPTVAPTSFLWAAYYPNRYYFEVCECLRRLLLTGVLVFVAPDTGVQVAYGCLFPF 686
H +++CV + ++ T+ G L + VL W + G G L + WS RH L++ +LV+ + ST+ F+TFAC+D GKSYLRAD+ I+C+T KH Y++YA +MI VYP+GIP + + L + R LNP TD+ N ED L+EK++KR+ +P + P+ FLW + P YY+EV EC RR+LLTGVLVF++P+T QVA C+F F
Sbjct: 1152 HVLSASCVFPVMDFYQSLLLTTLGPLGVAMVLVLTYWIAKRRAGAGSAGSLMRRAAWS---RHMAAGLLLSFLVFIATSTMAFKTFACDDEAVEGKSYLRADYSIQCHTDKHEWYKVYAGVMIMVYPVGIPLLYAFILWQNRESLNPRVKTGAVVNPRADGSTDRITYKANSED-------LEEKLEKRRRNPDLIPSMFLWKDFGPEIYYYEVVECGRRILLTGVLVFISPNTAAQVAAACMFAF 1387 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7112.18329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig7112.18329.1 >prot_F-serratus_M_contig7112.18329.1 ID=prot_F-serratus_M_contig7112.18329.1|Name=mRNA_F-serratus_M_contig7112.18329.1|organism=Fucus serratus male|type=polypeptide|length=222bp MIKAEFADTDSNDALVYSVGLIIVNIFFALSIWWNAFATIKATFSRSHVQback to top mRNA from alignment at F-serratus_M_contig7112:883..9692+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig7112.18329.1 ID=mRNA_F-serratus_M_contig7112.18329.1|Name=mRNA_F-serratus_M_contig7112.18329.1|organism=Fucus serratus male|type=mRNA|length=8810bp|location=Sequence derived from alignment at F-serratus_M_contig7112:883..9692+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig7112:883..9692+ >mRNA_F-serratus_M_contig7112.18329.1 ID=mRNA_F-serratus_M_contig7112.18329.1|Name=mRNA_F-serratus_M_contig7112.18329.1|organism=Fucus serratus male|type=CDS|length=1332bp|location=Sequence derived from alignment at F-serratus_M_contig7112:883..9692+ (Fucus serratus male)back to top |