mRNA_F-serratus_M_contig71.18306.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig71.18306.1
Unique NamemRNA_F-serratus_M_contig71.18306.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig71.18306.1 vs. uniprot
Match: A0A6H5KV87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV87_9PHAE)

HSP 1 Score: 266 bits (681), Expect = 2.930e-85
Identity = 136/222 (61.26%), Postives = 173/222 (77.93%), Query Frame = 1
Query:    1 GDEE--DWEPIDRDHVVKFFQIINAQSQAQAASFNQQVAQYRGKIDEQQLTDLGINHFEEQLFKNQKQILAGMGISLEDMEDATAYYKQEGDPLVKEQVTILEKLYLAVSK-STSVDMPGLPDDLTADKMVTVVSAFFKASNDCIREVVEDLIAQARFCPTDPATAREMSVLLQQRNGPATDAAIKRFNLDSNTIGPAMEKFQDHPEIQNAIRVGAQQQREM 657
            GDEE  +WEP+DR HVVKFFQI+N Q      SFNQQ+AQYRGK+ EQQLTDL + HFE+ L K Q Q+  GMGISLEDMEDA+ YY+++GDP VKEQ+  L+ LYL VS   T  + P LPDDLT +KMVTVV+AFFKASN+ +  VV++L+A+     + P TA +MS+++Q+RNGPATD AIKRFNL+S TIGPAMEKFQ+HPEI+ AI VG+++Q ++
Sbjct:  161 GDEEMEEWEPVDRSHVVKFFQILNQQLHQSIMSFNQQIAQYRGKVPEQQLTDLAVGHFEDSLAKTQAQVSVGMGISLEDMEDASKYYEEKGDPQVKEQLRHLKHLYLTVSNLPTDEEEPELPDDLTVEKMVTVVTAFFKASNNVVESVVQELLAKGEDI-SSPETAMKMSMIIQERNGPATDEAIKRFNLNSTTIGPAMEKFQEHPEIKTAIMVGSEEQHQI 381          
BLAST of mRNA_F-serratus_M_contig71.18306.1 vs. uniprot
Match: D7FYT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYT1_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 1.180e-83
Identity = 133/222 (59.91%), Postives = 171/222 (77.03%), Query Frame = 1
Query:    1 GDEE--DWEPIDRDHVVKFFQIINAQSQAQAASFNQQVAQYRGKIDEQQLTDLGINHFEEQLFKNQKQILAGMGISLEDMEDATAYYKQEGDPLVKEQVTILEKLYLAVSK-STSVDMPGLPDDLTADKMVTVVSAFFKASNDCIREVVEDLIAQARFCPTDPATAREMSVLLQQRNGPATDAAIKRFNLDSNTIGPAMEKFQDHPEIQNAIRVGAQQQREM 657
            GDEE  +WEP+DRDHVVKFFQI+N QS     SFNQQ+ QYRGK+ EQ LTDL + HFE+ L K Q QI  GMGISLEDMEDA+ YY+++GD  VKEQ+  L+ LYL VS   T  + P LPDDLT +KMVTVV+AFFKASN+ I  VV++L+A+     T+P TA +MS+ +Q+++GPATD AIKRFNL+S TIGPAM+KF++H EI+ AI VG+++Q ++
Sbjct:    2 GDEEMEEWEPVDRDHVVKFFQILNQQSHQSIMSFNQQIVQYRGKVPEQHLTDLAVGHFEDSLAKTQAQISVGMGISLEDMEDASKYYEEKGDQQVKEQLRHLKNLYLTVSNLPTDEEEPELPDDLTVEKMVTVVTAFFKASNNVIESVVQELLAKGGDV-TNPETAMKMSMAIQEKSGPATDEAIKRFNLNSTTIGPAMDKFREHEEIKTAIMVGSEEQHQI 222          
BLAST of mRNA_F-serratus_M_contig71.18306.1 vs. uniprot
Match: A0A835ZBD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBD1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.290e-18
Identity = 59/208 (28.37%), Postives = 104/208 (50.00%), Query Frame = 1
Query:   25 IDRDHVVKFFQIINAQSQAQAASFNQQVAQYRGKIDEQQLTDLGINHFEEQLFKNQKQILAGMGISLEDMEDATAYYKQEGDPLVKEQVTILEKLYLAVSKSTSVDMPGLPDDLTADKMVTVVSAFFKASNDCIREVVEDLIAQARFCPTDPATAREMSVLLQQRNGPATDAAIKRFNLDSNTIGPAMEKFQDHPEIQNAIRVGAQQQ 648
            + +D V +FF +I         +   Q+AQYRG++  +QL  + +  FE+QL + Q  +L   G + E++E AT YY  +GD  V+     L ++Y AVS  ++     LP  LT D +   ++ +F  S   +R +VED+  + +           M    ++++  ATDA +  + + S  +GPA+EKF+   ++        Q+Q
Sbjct:   49 VPKDKVAEFFDVIIENMTKAIMALEAQLAQYRGQVPREQLAQVMLQQFEDQLQQQQDALLKKWGYTEEELEAATEYYGGDGD--VRHGAQRLRRMYEAVSGQSA---GQLPRGLTEDTLCAALNDYFDVSIALMRRLVEDVTDRGQSVDNPLMMQEIMMRFTREQDAVATDA-LAAYGMHSEMVGPAIEKFKGSDKVMGTFAACQQRQ 250          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig71.18306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KV87_9PHAE2.930e-8561.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYT1_ECTSI1.180e-8359.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZBD1_9STRA2.290e-1828.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig71contigF-serratus_M_contig71:777116..781585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_002400.1
Exons6
Model size660
Cds size660
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig71.18306.1prot_F-serratus_M_contig71.18306.1Fucus serratus malepolypeptideF-serratus_M_contig71 777116..781585 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932183.7694378-CDS-F-serratus_M_contig71:777115..7772051622932183.7694378-CDS-F-serratus_M_contig71:777115..777205Fucus serratus maleCDSF-serratus_M_contig71 777116..777205 -
1690964188.241482-CDS-F-serratus_M_contig71:777115..7772051690964188.241482-CDS-F-serratus_M_contig71:777115..777205Fucus serratus maleCDSF-serratus_M_contig71 777116..777205 -
1622932183.7898424-CDS-F-serratus_M_contig71:779050..7791531622932183.7898424-CDS-F-serratus_M_contig71:779050..779153Fucus serratus maleCDSF-serratus_M_contig71 779051..779153 -
1690964188.2564647-CDS-F-serratus_M_contig71:779050..7791531690964188.2564647-CDS-F-serratus_M_contig71:779050..779153Fucus serratus maleCDSF-serratus_M_contig71 779051..779153 -
1622932183.8282163-CDS-F-serratus_M_contig71:779685..7798761622932183.8282163-CDS-F-serratus_M_contig71:779685..779876Fucus serratus maleCDSF-serratus_M_contig71 779686..779876 -
1690964188.2728517-CDS-F-serratus_M_contig71:779685..7798761690964188.2728517-CDS-F-serratus_M_contig71:779685..779876Fucus serratus maleCDSF-serratus_M_contig71 779686..779876 -
1622932183.8450346-CDS-F-serratus_M_contig71:780347..7804251622932183.8450346-CDS-F-serratus_M_contig71:780347..780425Fucus serratus maleCDSF-serratus_M_contig71 780348..780425 -
1690964188.2836857-CDS-F-serratus_M_contig71:780347..7804251690964188.2836857-CDS-F-serratus_M_contig71:780347..780425Fucus serratus maleCDSF-serratus_M_contig71 780348..780425 -
1622932183.8634636-CDS-F-serratus_M_contig71:781138..7812491622932183.8634636-CDS-F-serratus_M_contig71:781138..781249Fucus serratus maleCDSF-serratus_M_contig71 781139..781249 -
1690964188.2943287-CDS-F-serratus_M_contig71:781138..7812491690964188.2943287-CDS-F-serratus_M_contig71:781138..781249Fucus serratus maleCDSF-serratus_M_contig71 781139..781249 -
1622932183.8790991-CDS-F-serratus_M_contig71:781498..7815851622932183.8790991-CDS-F-serratus_M_contig71:781498..781585Fucus serratus maleCDSF-serratus_M_contig71 781499..781585 -
1690964188.306688-CDS-F-serratus_M_contig71:781498..7815851690964188.306688-CDS-F-serratus_M_contig71:781498..781585Fucus serratus maleCDSF-serratus_M_contig71 781499..781585 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig71.18306.1

>prot_F-serratus_M_contig71.18306.1 ID=prot_F-serratus_M_contig71.18306.1|Name=mRNA_F-serratus_M_contig71.18306.1|organism=Fucus serratus male|type=polypeptide|length=220bp
GDEEDWEPIDRDHVVKFFQIINAQSQAQAASFNQQVAQYRGKIDEQQLTD
LGINHFEEQLFKNQKQILAGMGISLEDMEDATAYYKQEGDPLVKEQVTIL
EKLYLAVSKSTSVDMPGLPDDLTADKMVTVVSAFFKASNDCIREVVEDLI
AQARFCPTDPATAREMSVLLQQRNGPATDAAIKRFNLDSNTIGPAMEKFQ
DHPEIQNAIRVGAQQQREM*
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mRNA from alignment at F-serratus_M_contig71:777116..781585-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig71.18306.1 ID=mRNA_F-serratus_M_contig71.18306.1|Name=mRNA_F-serratus_M_contig71.18306.1|organism=Fucus serratus male|type=mRNA|length=4470bp|location=Sequence derived from alignment at F-serratus_M_contig71:777116..781585- (Fucus serratus male)
GGGGATGAGGAAGACTGGGAGCCAATCGACCGAGACCACGTGGTGAAGTT CTTTCAGATTATAAACGCCCAATCGCAAGCACAAGCGGTGAGATTCGGGA ACAGACGCGAACGGAGACATAGCCCGAGCTCTTGAGCTAGACACCATGAA TACAAAACAATAACGTACCCCGATGGCAATCCCATTTCACCTATAGTCTG CCATGGAGCCTAAGCAAAGCCGAGCTGCAGTATAAATAAACGGTAACCAG TACTTGTATCGCCCGTGGTATCTGTATTCAAGTCTAATAACAGCCCCGCG TCTACAACCGCAATAAATCCATTTTAAATATATCAGGCCAGTTTTAACCA GCAAGTCGCGCAGTACAGGGGCAAGATCGATGAGCAGCAGCTCACGGACC TCGGCATCAACCACTTCGAGGAACAGCTCTTCAAGAATCAGAAACAGGTG CGCCCCCGCCCGCTGATTGGTCAACATAAGAAATGGATCCACCCGTGTAA CGAGCAATACACAACAAAACAGATTGTGCATGACGACGTAGGGGTTTCTT ATGCTACCCATCGGGTCTGGACAACCCCCCGACAGAGACAGCGACGGTTC CCTTGCTCTAGTGCTCTAGTGTAGCCTGCGAGGTGTTCTTCTGTTGCTTG ATTGTATCGTTCAGATCACGACAAGCTCCGGGCAAGAGGTTGGGGTCGCA GGTAGTGCTGTTCAATCCCAAGGAGGAGGGGGAGGGTGTTGGGGAGGGCG TTTTGGTAAAAAGAAGAAACTGGTGTTTACCCCGAAAACGCATGTCTACG CCGGTCTCTTTTTTAATAGATCTGTGTTACTCAAGACTTGTGTGCTGTTT TGTTTAGTTATTCGACCGCACCGATCGAAGCACAAACTTTTATATCCCGT CGAGTCGAAGGCGATCCCGCTCCACACCCCTGCCCCGCCCCGCCTCGTAC CACCACCGTGTCATGCTTTGATGCTGGGGTATAGATGCCAGGGCAGTTGC TTCGTGCCCTCCCCGAGGTTCGAGATTCACACTATCACACCATGTGTTAC TATTACAGTAATATTAATACCGTTGTGTCGCTATAACACAGTGCTACTAT TAATAATCGCAAGTCTTCTATCTTGTGATGCATCCTGCACGCCTCCTTAC ACCAAATCAGATCCTGGCGGGCATGGGGATTTCTCTTGAGGACATGGAGG ACGCAACCGCCTACTACAAACAGGAGGGCGACCCGCTGGTACGGACTTTC GGTTATGTTATGTTAAGGTTGTGTCACGTTTCTTTCTCTCTCCTCCTTGG AATGTTATATTTTCGTGCTAATTAATAATTCATTGTTCATCCGGCAGAAT GTTCGTTTACTTCGTGTGCCCCGTTTTCTGTTTTCTGCCTCTCGACAGCA GCGTAGATCTTGATATTTCTCCACAGCAGCGCGTGTGTAAACCCTTGACT CTCTACTACGACGATGCAAGCCACGTACTGTACGATGTACTGACGTGTGT AGATGGTAGATGGTTCTGACGATGTTGATTTCCGGGACGGCCTGGGGTAA CATGACGGCGTCCGTAGCCATTCCTTCTTTACTACTGGTATTAATCATAT AAAATCCTTGTTGTTATGCCACTATCCTTTGTGGGTCATAGTCATCAGGT CATTTACCTTTGGGCCATGGTTTATTATACCCTTAACCTGTCATATTTCT TGGTCGCAGGTGAAGGAGCAGGTGACCATACTCGAGAAACTCTACCTTGC GGTGTCGAAGTCGACGAGCGTGGACATGCCGGGGTTGCCGGACGACCTCA CGGCGGACAAGATGGTGACTGTCGTGAGCGCGTTCTTCAAGGCATCGAAC GACTGCATCCGGGAGGTCGTAGAGGACCTGATCGCGCAGGCGAGGTTTTG GTGTCACGCGTGTAGAAATTGTTGGTACAGCATTACTGCTGGACCAGTAA TAATCTTAATGTTAATATGTTAATATTAATATGGCTAATCCGCTGACTCT GCCTTTGCCACAGGCAGGTGTTATCTTTCGTCTCTTCTTTTTTTTACTAA ATCGTCTCGTGTTTTTTTGGGAGAGTTTTGCTCGTTATTGCCCCATACCC TGTGTTTTGAAGTGATATTCTTATTGTACCGAAGTATTTCAGTTATGTTT AACCGAGCCGGTATGCGTTCGGAGAGAGAGGGGAAAGGAAAAGTAAGGCC AGGAGAATATCAGCACGTGATAAATCGATATCCATTCCAAGTTTTTTTTT CCGAACGAAACTCCGAACGGTGTGAATACCGAATGGGTGAATACCGAATG GTCGAACGCGTCTATCCCCGTCCCGTTCGGTAGGATGACTAGTTTCGTTC CCGACGATGCTTTCCTGTTCAATGTTTTCCCGGGAGATGCTTTGCTGACT CTTGCGATATGCTCGGCGCTTCAGGGAAAGAGCCCTACCGACCCAGCCAC CGCCAGGGAGATGAGCGTGCTGTTGCAGCAACGGAACGGGCCGGCGACGG ATGCGGCCATCAAGCGCTTCAACTTGGACTCTAACGTGCGTGCCGGATTG CCATTCCTTTTTGCCAATAACAATGTGTTAATATTACTATTATGGTTGCC CTTGAGTTGTATCTCTTGACACTATGCTCTACGTGGTACTAAAATAGTGG TGCGAACACTCTTAACCGCGACTTTTCTTCCTCTCTCTCCATTACATTAC AGTCATTACAGTGTAAAATCAAGCATGTGAAGATATTTTTCCTAATTCGA GGGAATGGTTAATGAAGGCTAATATTGTGCCATCGTTTATTCAGGCATTT CCGCTCTTTTTTTTATATATTTCTCTTTCTTTCTTTCTTTCTTCGTCTTT CATTGATAGTATGGTATAGTTTAGTATAGTGCATGGCGTTTCGGAATACG TTGCCCATGATTTTTTTTCCTAATCCGAGGAAATGGTTAATGAAGGCTAA TATTGTGCCATCGTTCATTCAGGCATTTCCGCTCTTTTTTATATATATTT CTCTTTCTTTCTTCGTCTTTCATTGATAGTATGGTATAGTTTAGTATAGT GCATGGCGTTTCGGAATACGTTGCCCATGAAAATCTTACATGTGTGATTT TCATTGTCAGCGATGACGACCACGTCAGCTACTTGACCCGATTTAAGGTT CCCCCTACTTGAAGCATTCCACCTGAACCCGTGTCTTTTGACCCGATTTA AGGTTCCCCCCACTTGAAGCATTCCACCTGAACCCATGCCTTTTGACCCG ATTTAAGGTTTCCCCCCACTTGAAGCATTCCACCTGAACCCGTGCCTTTT GACCCGATTTAACGTTCCCTCCACTTGAAGCATTATGTTGTTGTTGTTTG TTGTTTTCTTCACATTAACCGATCGGGCCTCAACCATACCCAGTAATATA CGTGGTTGCCAATCCGGTACGAGGCATTATATCATACCTGAACCCGTGCC TTTTGACCCGATTTAAGGTTCCCTCCCACTTGAAGCATTCCACCTGAACC CGTGCCTTTTGACCCGATTTAAGGTTCCCCCCACTTGAATCATTCCACCT GAACCCATGCCTTCTGACCCGATATAAGGGGAGCGCGGGGGGGGGGGACA TCATTTAGACTCAAGAGCTTTCGTGGATGCGCAGATGCATATATACCCTA ATAACTACAGTATTAGTTAGCTTACCTACCTTGTTAAAGTCTTGACCGTT GATCGCATGTGCAAATTCAATCCTTTCCCGTATGTTCATTACCATCATAC ACCGCGGTGGTATAACTTTTGGGCGTGAATGTAGCCGTTGAGGGTTGTTG GTTATATGAGAAGGTTCACAAGAAATGCCCCACCAATGTCCTCCTCACTA TTTTACAGTGTTTACAGTGTTTGGGGACGGGGCTAGTTTAACCTTACCCA CCCAAATCTGCGTCTAACCATAGTGACCATTGCCTCGCGAGGAGTTATAT GGTACGAGGCTGTGCAGTCAAGTCGAGGGCATGGCCACGCGCTCTCGGCT CCACAGCATCGGTGCGTTGCCGTGGTTTCCACGCATGATGCCCCCCTCCT ACCGATCGACGACGATCGACGACATGTTATACTAGACTTTTTATTTTATT TTTTCTTTAATCTCACGTATAGGCGATGGACCTCACAATTGCCATTCTGC CTGTGGTCACAAAGGATCTTTTCATCTCTCCCCGGTTCACGCCTTACATT TTTTTTATTGCGATGCAGGTTCAGCAATCTTACAACTCGTCAAGCAATGG TTGAAAAAATGATATATTGATAAACCTTATCGTCACGCCTATTATTAATA ATGTATTAATATCATGATGCCTCCTGGCCGGCATCTTACCAGTGTGACTC ACGATTTCTCGGTATGTCTTTTGGCCTCAGACGATCGGACCCGCGATGGA GAAGTTCCAAGATCACCCAGAGATACAGAATGCTATTCGAGTGGGAGCCC AGCAGCAGCGCGAGATGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig71:777116..781585-

>mRNA_F-serratus_M_contig71.18306.1 ID=mRNA_F-serratus_M_contig71.18306.1|Name=mRNA_F-serratus_M_contig71.18306.1|organism=Fucus serratus male|type=CDS|length=1320bp|location=Sequence derived from alignment at F-serratus_M_contig71:777116..781585- (Fucus serratus male)
GGGGATGAGGAAGACTGGGAGCCAATCGACCGAGACCACGTGGTGAAGTT
CTTTCAGATTATAAACGCCCAATCGCAAGCACAAGCGGGGGATGAGGAAG
ACTGGGAGCCAATCGACCGAGACCACGTGGTGAAGTTCTTTCAGATTATA
AACGCCCAATCGCAAGCACAAGCGGCCAGTTTTAACCAGCAAGTCGCGCA
GTACAGGGGCAAGATCGATGAGCAGCAGCTCACGGACCTCGGCATCAACC
ACTTCGAGGAACAGCTCTTCAAGAATCAGAAACAGGCCAGTTTTAACCAG
CAAGTCGCGCAGTACAGGGGCAAGATCGATGAGCAGCAGCTCACGGACCT
CGGCATCAACCACTTCGAGGAACAGCTCTTCAAGAATCAGAAACAGATCC
TGGCGGGCATGGGGATTTCTCTTGAGGACATGGAGGACGCAACCGCCTAC
TACAAACAGGAGGGCGACCCGCTGATCCTGGCGGGCATGGGGATTTCTCT
TGAGGACATGGAGGACGCAACCGCCTACTACAAACAGGAGGGCGACCCGC
TGGTGAAGGAGCAGGTGACCATACTCGAGAAACTCTACCTTGCGGTGTCG
AAGTCGACGAGCGTGGACATGCCGGGGTTGCCGGACGACCTCACGGCGGA
CAAGATGGTGACTGTCGTGAGCGCGTTCTTCAAGGCATCGAACGACTGCA
TCCGGGAGGTCGTAGAGGACCTGATCGCGCAGGCGAGGTTTTGGTGAAGG
AGCAGGTGACCATACTCGAGAAACTCTACCTTGCGGTGTCGAAGTCGACG
AGCGTGGACATGCCGGGGTTGCCGGACGACCTCACGGCGGACAAGATGGT
GACTGTCGTGAGCGCGTTCTTCAAGGCATCGAACGACTGCATCCGGGAGG
TCGTAGAGGACCTGATCGCGCAGGCGAGGTTTTGCCCTACCGACCCAGCC
ACCGCCAGGGAGATGAGCGTGCTGTTGCAGCAACGGAACGGGCCGGCGAC
GGATGCGGCCATCAAGCGCTTCAACTTGGACTCTAACCCCTACCGACCCA
GCCACCGCCAGGGAGATGAGCGTGCTGTTGCAGCAACGGAACGGGCCGGC
GACGGATGCGGCCATCAAGCGCTTCAACTTGGACTCTAACACGATCGGAC
CCGCGATGGAGAAGTTCCAAGATCACCCAGAGATACAGAATGCTATTCGA
GTGGGAGCCCAGCAGCAGCGCGAGATGTGAACGATCGGACCCGCGATGGA
GAAGTTCCAAGATCACCCAGAGATACAGAATGCTATTCGAGTGGGAGCCC
AGCAGCAGCGCGAGATGTGA
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