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Homology
BLAST of mRNA_F-serratus_M_contig71.18306.1 vs. uniprot
Match: A0A6H5KV87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV87_9PHAE) HSP 1 Score: 266 bits (681), Expect = 2.930e-85 Identity = 136/222 (61.26%), Postives = 173/222 (77.93%), Query Frame = 1
Query: 1 GDEE--DWEPIDRDHVVKFFQIINAQSQAQAASFNQQVAQYRGKIDEQQLTDLGINHFEEQLFKNQKQILAGMGISLEDMEDATAYYKQEGDPLVKEQVTILEKLYLAVSK-STSVDMPGLPDDLTADKMVTVVSAFFKASNDCIREVVEDLIAQARFCPTDPATAREMSVLLQQRNGPATDAAIKRFNLDSNTIGPAMEKFQDHPEIQNAIRVGAQQQREM 657
GDEE +WEP+DR HVVKFFQI+N Q SFNQQ+AQYRGK+ EQQLTDL + HFE+ L K Q Q+ GMGISLEDMEDA+ YY+++GDP VKEQ+ L+ LYL VS T + P LPDDLT +KMVTVV+AFFKASN+ + VV++L+A+ + P TA +MS+++Q+RNGPATD AIKRFNL+S TIGPAMEKFQ+HPEI+ AI VG+++Q ++
Sbjct: 161 GDEEMEEWEPVDRSHVVKFFQILNQQLHQSIMSFNQQIAQYRGKVPEQQLTDLAVGHFEDSLAKTQAQVSVGMGISLEDMEDASKYYEEKGDPQVKEQLRHLKHLYLTVSNLPTDEEEPELPDDLTVEKMVTVVTAFFKASNNVVESVVQELLAKGEDI-SSPETAMKMSMIIQERNGPATDEAIKRFNLNSTTIGPAMEKFQEHPEIKTAIMVGSEEQHQI 381
BLAST of mRNA_F-serratus_M_contig71.18306.1 vs. uniprot
Match: D7FYT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYT1_ECTSI) HSP 1 Score: 257 bits (656), Expect = 1.180e-83 Identity = 133/222 (59.91%), Postives = 171/222 (77.03%), Query Frame = 1
Query: 1 GDEE--DWEPIDRDHVVKFFQIINAQSQAQAASFNQQVAQYRGKIDEQQLTDLGINHFEEQLFKNQKQILAGMGISLEDMEDATAYYKQEGDPLVKEQVTILEKLYLAVSK-STSVDMPGLPDDLTADKMVTVVSAFFKASNDCIREVVEDLIAQARFCPTDPATAREMSVLLQQRNGPATDAAIKRFNLDSNTIGPAMEKFQDHPEIQNAIRVGAQQQREM 657
GDEE +WEP+DRDHVVKFFQI+N QS SFNQQ+ QYRGK+ EQ LTDL + HFE+ L K Q QI GMGISLEDMEDA+ YY+++GD VKEQ+ L+ LYL VS T + P LPDDLT +KMVTVV+AFFKASN+ I VV++L+A+ T+P TA +MS+ +Q+++GPATD AIKRFNL+S TIGPAM+KF++H EI+ AI VG+++Q ++
Sbjct: 2 GDEEMEEWEPVDRDHVVKFFQILNQQSHQSIMSFNQQIVQYRGKVPEQHLTDLAVGHFEDSLAKTQAQISVGMGISLEDMEDASKYYEEKGDQQVKEQLRHLKNLYLTVSNLPTDEEEPELPDDLTVEKMVTVVTAFFKASNNVIESVVQELLAKGGDV-TNPETAMKMSMAIQEKSGPATDEAIKRFNLNSTTIGPAMDKFREHEEIKTAIMVGSEEQHQI 222
BLAST of mRNA_F-serratus_M_contig71.18306.1 vs. uniprot
Match: A0A835ZBD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBD1_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 2.290e-18 Identity = 59/208 (28.37%), Postives = 104/208 (50.00%), Query Frame = 1
Query: 25 IDRDHVVKFFQIINAQSQAQAASFNQQVAQYRGKIDEQQLTDLGINHFEEQLFKNQKQILAGMGISLEDMEDATAYYKQEGDPLVKEQVTILEKLYLAVSKSTSVDMPGLPDDLTADKMVTVVSAFFKASNDCIREVVEDLIAQARFCPTDPATAREMSVLLQQRNGPATDAAIKRFNLDSNTIGPAMEKFQDHPEIQNAIRVGAQQQ 648
+ +D V +FF +I + Q+AQYRG++ +QL + + FE+QL + Q +L G + E++E AT YY +GD V+ L ++Y AVS ++ LP LT D + ++ +F S +R +VED+ + + M ++++ ATDA + + + S +GPA+EKF+ ++ Q+Q
Sbjct: 49 VPKDKVAEFFDVIIENMTKAIMALEAQLAQYRGQVPREQLAQVMLQQFEDQLQQQQDALLKKWGYTEEELEAATEYYGGDGD--VRHGAQRLRRMYEAVSGQSA---GQLPRGLTEDTLCAALNDYFDVSIALMRRLVEDVTDRGQSVDNPLMMQEIMMRFTREQDAVATDA-LAAYGMHSEMVGPAIEKFKGSDKVMGTFAACQQRQ 250
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-19_002400.1 |
| Exons | 6 |
| Model size | 660 |
| Cds size | 660 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622932183.7694378-CDS-F-serratus_M_contig71:777115..777205 | 1622932183.7694378-CDS-F-serratus_M_contig71:777115..777205 | Fucus serratus male | CDS | F-serratus_M_contig71 777116..777205 - |
| 1690964188.241482-CDS-F-serratus_M_contig71:777115..777205 | 1690964188.241482-CDS-F-serratus_M_contig71:777115..777205 | Fucus serratus male | CDS | F-serratus_M_contig71 777116..777205 - |
| 1622932183.7898424-CDS-F-serratus_M_contig71:779050..779153 | 1622932183.7898424-CDS-F-serratus_M_contig71:779050..779153 | Fucus serratus male | CDS | F-serratus_M_contig71 779051..779153 - |
| 1690964188.2564647-CDS-F-serratus_M_contig71:779050..779153 | 1690964188.2564647-CDS-F-serratus_M_contig71:779050..779153 | Fucus serratus male | CDS | F-serratus_M_contig71 779051..779153 - |
| 1622932183.8282163-CDS-F-serratus_M_contig71:779685..779876 | 1622932183.8282163-CDS-F-serratus_M_contig71:779685..779876 | Fucus serratus male | CDS | F-serratus_M_contig71 779686..779876 - |
| 1690964188.2728517-CDS-F-serratus_M_contig71:779685..779876 | 1690964188.2728517-CDS-F-serratus_M_contig71:779685..779876 | Fucus serratus male | CDS | F-serratus_M_contig71 779686..779876 - |
| 1622932183.8450346-CDS-F-serratus_M_contig71:780347..780425 | 1622932183.8450346-CDS-F-serratus_M_contig71:780347..780425 | Fucus serratus male | CDS | F-serratus_M_contig71 780348..780425 - |
| 1690964188.2836857-CDS-F-serratus_M_contig71:780347..780425 | 1690964188.2836857-CDS-F-serratus_M_contig71:780347..780425 | Fucus serratus male | CDS | F-serratus_M_contig71 780348..780425 - |
| 1622932183.8634636-CDS-F-serratus_M_contig71:781138..781249 | 1622932183.8634636-CDS-F-serratus_M_contig71:781138..781249 | Fucus serratus male | CDS | F-serratus_M_contig71 781139..781249 - |
| 1690964188.2943287-CDS-F-serratus_M_contig71:781138..781249 | 1690964188.2943287-CDS-F-serratus_M_contig71:781138..781249 | Fucus serratus male | CDS | F-serratus_M_contig71 781139..781249 - |
| 1622932183.8790991-CDS-F-serratus_M_contig71:781498..781585 | 1622932183.8790991-CDS-F-serratus_M_contig71:781498..781585 | Fucus serratus male | CDS | F-serratus_M_contig71 781499..781585 - |
| 1690964188.306688-CDS-F-serratus_M_contig71:781498..781585 | 1690964188.306688-CDS-F-serratus_M_contig71:781498..781585 | Fucus serratus male | CDS | F-serratus_M_contig71 781499..781585 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig71.18306.1 >prot_F-serratus_M_contig71.18306.1 ID=prot_F-serratus_M_contig71.18306.1|Name=mRNA_F-serratus_M_contig71.18306.1|organism=Fucus serratus male|type=polypeptide|length=220bp
GDEEDWEPIDRDHVVKFFQIINAQSQAQAASFNQQVAQYRGKIDEQQLTD LGINHFEEQLFKNQKQILAGMGISLEDMEDATAYYKQEGDPLVKEQVTIL EKLYLAVSKSTSVDMPGLPDDLTADKMVTVVSAFFKASNDCIREVVEDLI AQARFCPTDPATAREMSVLLQQRNGPATDAAIKRFNLDSNTIGPAMEKFQ DHPEIQNAIRVGAQQQREM* back to topmRNA from alignment at F-serratus_M_contig71:777116..781585- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig71.18306.1 ID=mRNA_F-serratus_M_contig71.18306.1|Name=mRNA_F-serratus_M_contig71.18306.1|organism=Fucus serratus male|type=mRNA|length=4470bp|location=Sequence derived from alignment at F-serratus_M_contig71:777116..781585- (Fucus serratus male) GGGGATGAGGAAGACTGGGAGCCAATCGACCGAGACCACGTGGTGAAGTT
CTTTCAGATTATAAACGCCCAATCGCAAGCACAAGCGGTGAGATTCGGGA
ACAGACGCGAACGGAGACATAGCCCGAGCTCTTGAGCTAGACACCATGAA
TACAAAACAATAACGTACCCCGATGGCAATCCCATTTCACCTATAGTCTG
CCATGGAGCCTAAGCAAAGCCGAGCTGCAGTATAAATAAACGGTAACCAG
TACTTGTATCGCCCGTGGTATCTGTATTCAAGTCTAATAACAGCCCCGCG
TCTACAACCGCAATAAATCCATTTTAAATATATCAGGCCAGTTTTAACCA
GCAAGTCGCGCAGTACAGGGGCAAGATCGATGAGCAGCAGCTCACGGACC
TCGGCATCAACCACTTCGAGGAACAGCTCTTCAAGAATCAGAAACAGGTG
CGCCCCCGCCCGCTGATTGGTCAACATAAGAAATGGATCCACCCGTGTAA
CGAGCAATACACAACAAAACAGATTGTGCATGACGACGTAGGGGTTTCTT
ATGCTACCCATCGGGTCTGGACAACCCCCCGACAGAGACAGCGACGGTTC
CCTTGCTCTAGTGCTCTAGTGTAGCCTGCGAGGTGTTCTTCTGTTGCTTG
ATTGTATCGTTCAGATCACGACAAGCTCCGGGCAAGAGGTTGGGGTCGCA
GGTAGTGCTGTTCAATCCCAAGGAGGAGGGGGAGGGTGTTGGGGAGGGCG
TTTTGGTAAAAAGAAGAAACTGGTGTTTACCCCGAAAACGCATGTCTACG
CCGGTCTCTTTTTTAATAGATCTGTGTTACTCAAGACTTGTGTGCTGTTT
TGTTTAGTTATTCGACCGCACCGATCGAAGCACAAACTTTTATATCCCGT
CGAGTCGAAGGCGATCCCGCTCCACACCCCTGCCCCGCCCCGCCTCGTAC
CACCACCGTGTCATGCTTTGATGCTGGGGTATAGATGCCAGGGCAGTTGC
TTCGTGCCCTCCCCGAGGTTCGAGATTCACACTATCACACCATGTGTTAC
TATTACAGTAATATTAATACCGTTGTGTCGCTATAACACAGTGCTACTAT
TAATAATCGCAAGTCTTCTATCTTGTGATGCATCCTGCACGCCTCCTTAC
ACCAAATCAGATCCTGGCGGGCATGGGGATTTCTCTTGAGGACATGGAGG
ACGCAACCGCCTACTACAAACAGGAGGGCGACCCGCTGGTACGGACTTTC
GGTTATGTTATGTTAAGGTTGTGTCACGTTTCTTTCTCTCTCCTCCTTGG
AATGTTATATTTTCGTGCTAATTAATAATTCATTGTTCATCCGGCAGAAT
GTTCGTTTACTTCGTGTGCCCCGTTTTCTGTTTTCTGCCTCTCGACAGCA
GCGTAGATCTTGATATTTCTCCACAGCAGCGCGTGTGTAAACCCTTGACT
CTCTACTACGACGATGCAAGCCACGTACTGTACGATGTACTGACGTGTGT
AGATGGTAGATGGTTCTGACGATGTTGATTTCCGGGACGGCCTGGGGTAA
CATGACGGCGTCCGTAGCCATTCCTTCTTTACTACTGGTATTAATCATAT
AAAATCCTTGTTGTTATGCCACTATCCTTTGTGGGTCATAGTCATCAGGT
CATTTACCTTTGGGCCATGGTTTATTATACCCTTAACCTGTCATATTTCT
TGGTCGCAGGTGAAGGAGCAGGTGACCATACTCGAGAAACTCTACCTTGC
GGTGTCGAAGTCGACGAGCGTGGACATGCCGGGGTTGCCGGACGACCTCA
CGGCGGACAAGATGGTGACTGTCGTGAGCGCGTTCTTCAAGGCATCGAAC
GACTGCATCCGGGAGGTCGTAGAGGACCTGATCGCGCAGGCGAGGTTTTG
GTGTCACGCGTGTAGAAATTGTTGGTACAGCATTACTGCTGGACCAGTAA
TAATCTTAATGTTAATATGTTAATATTAATATGGCTAATCCGCTGACTCT
GCCTTTGCCACAGGCAGGTGTTATCTTTCGTCTCTTCTTTTTTTTACTAA
ATCGTCTCGTGTTTTTTTGGGAGAGTTTTGCTCGTTATTGCCCCATACCC
TGTGTTTTGAAGTGATATTCTTATTGTACCGAAGTATTTCAGTTATGTTT
AACCGAGCCGGTATGCGTTCGGAGAGAGAGGGGAAAGGAAAAGTAAGGCC
AGGAGAATATCAGCACGTGATAAATCGATATCCATTCCAAGTTTTTTTTT
CCGAACGAAACTCCGAACGGTGTGAATACCGAATGGGTGAATACCGAATG
GTCGAACGCGTCTATCCCCGTCCCGTTCGGTAGGATGACTAGTTTCGTTC
CCGACGATGCTTTCCTGTTCAATGTTTTCCCGGGAGATGCTTTGCTGACT
CTTGCGATATGCTCGGCGCTTCAGGGAAAGAGCCCTACCGACCCAGCCAC
CGCCAGGGAGATGAGCGTGCTGTTGCAGCAACGGAACGGGCCGGCGACGG
ATGCGGCCATCAAGCGCTTCAACTTGGACTCTAACGTGCGTGCCGGATTG
CCATTCCTTTTTGCCAATAACAATGTGTTAATATTACTATTATGGTTGCC
CTTGAGTTGTATCTCTTGACACTATGCTCTACGTGGTACTAAAATAGTGG
TGCGAACACTCTTAACCGCGACTTTTCTTCCTCTCTCTCCATTACATTAC
AGTCATTACAGTGTAAAATCAAGCATGTGAAGATATTTTTCCTAATTCGA
GGGAATGGTTAATGAAGGCTAATATTGTGCCATCGTTTATTCAGGCATTT
CCGCTCTTTTTTTTATATATTTCTCTTTCTTTCTTTCTTTCTTCGTCTTT
CATTGATAGTATGGTATAGTTTAGTATAGTGCATGGCGTTTCGGAATACG
TTGCCCATGATTTTTTTTCCTAATCCGAGGAAATGGTTAATGAAGGCTAA
TATTGTGCCATCGTTCATTCAGGCATTTCCGCTCTTTTTTATATATATTT
CTCTTTCTTTCTTCGTCTTTCATTGATAGTATGGTATAGTTTAGTATAGT
GCATGGCGTTTCGGAATACGTTGCCCATGAAAATCTTACATGTGTGATTT
TCATTGTCAGCGATGACGACCACGTCAGCTACTTGACCCGATTTAAGGTT
CCCCCTACTTGAAGCATTCCACCTGAACCCGTGTCTTTTGACCCGATTTA
AGGTTCCCCCCACTTGAAGCATTCCACCTGAACCCATGCCTTTTGACCCG
ATTTAAGGTTTCCCCCCACTTGAAGCATTCCACCTGAACCCGTGCCTTTT
GACCCGATTTAACGTTCCCTCCACTTGAAGCATTATGTTGTTGTTGTTTG
TTGTTTTCTTCACATTAACCGATCGGGCCTCAACCATACCCAGTAATATA
CGTGGTTGCCAATCCGGTACGAGGCATTATATCATACCTGAACCCGTGCC
TTTTGACCCGATTTAAGGTTCCCTCCCACTTGAAGCATTCCACCTGAACC
CGTGCCTTTTGACCCGATTTAAGGTTCCCCCCACTTGAATCATTCCACCT
GAACCCATGCCTTCTGACCCGATATAAGGGGAGCGCGGGGGGGGGGGACA
TCATTTAGACTCAAGAGCTTTCGTGGATGCGCAGATGCATATATACCCTA
ATAACTACAGTATTAGTTAGCTTACCTACCTTGTTAAAGTCTTGACCGTT
GATCGCATGTGCAAATTCAATCCTTTCCCGTATGTTCATTACCATCATAC
ACCGCGGTGGTATAACTTTTGGGCGTGAATGTAGCCGTTGAGGGTTGTTG
GTTATATGAGAAGGTTCACAAGAAATGCCCCACCAATGTCCTCCTCACTA
TTTTACAGTGTTTACAGTGTTTGGGGACGGGGCTAGTTTAACCTTACCCA
CCCAAATCTGCGTCTAACCATAGTGACCATTGCCTCGCGAGGAGTTATAT
GGTACGAGGCTGTGCAGTCAAGTCGAGGGCATGGCCACGCGCTCTCGGCT
CCACAGCATCGGTGCGTTGCCGTGGTTTCCACGCATGATGCCCCCCTCCT
ACCGATCGACGACGATCGACGACATGTTATACTAGACTTTTTATTTTATT
TTTTCTTTAATCTCACGTATAGGCGATGGACCTCACAATTGCCATTCTGC
CTGTGGTCACAAAGGATCTTTTCATCTCTCCCCGGTTCACGCCTTACATT
TTTTTTATTGCGATGCAGGTTCAGCAATCTTACAACTCGTCAAGCAATGG
TTGAAAAAATGATATATTGATAAACCTTATCGTCACGCCTATTATTAATA
ATGTATTAATATCATGATGCCTCCTGGCCGGCATCTTACCAGTGTGACTC
ACGATTTCTCGGTATGTCTTTTGGCCTCAGACGATCGGACCCGCGATGGA
GAAGTTCCAAGATCACCCAGAGATACAGAATGCTATTCGAGTGGGAGCCC
AGCAGCAGCGCGAGATGTGA back to topCoding sequence (CDS) from alignment at F-serratus_M_contig71:777116..781585- >mRNA_F-serratus_M_contig71.18306.1 ID=mRNA_F-serratus_M_contig71.18306.1|Name=mRNA_F-serratus_M_contig71.18306.1|organism=Fucus serratus male|type=CDS|length=1320bp|location=Sequence derived from alignment at F-serratus_M_contig71:777116..781585- (Fucus serratus male) GGGGATGAGGAAGACTGGGAGCCAATCGACCGAGACCACGTGGTGAAGTT CTTTCAGATTATAAACGCCCAATCGCAAGCACAAGCGGGGGATGAGGAAG ACTGGGAGCCAATCGACCGAGACCACGTGGTGAAGTTCTTTCAGATTATA AACGCCCAATCGCAAGCACAAGCGGCCAGTTTTAACCAGCAAGTCGCGCA GTACAGGGGCAAGATCGATGAGCAGCAGCTCACGGACCTCGGCATCAACC ACTTCGAGGAACAGCTCTTCAAGAATCAGAAACAGGCCAGTTTTAACCAG CAAGTCGCGCAGTACAGGGGCAAGATCGATGAGCAGCAGCTCACGGACCT CGGCATCAACCACTTCGAGGAACAGCTCTTCAAGAATCAGAAACAGATCC TGGCGGGCATGGGGATTTCTCTTGAGGACATGGAGGACGCAACCGCCTAC TACAAACAGGAGGGCGACCCGCTGATCCTGGCGGGCATGGGGATTTCTCT TGAGGACATGGAGGACGCAACCGCCTACTACAAACAGGAGGGCGACCCGC TGGTGAAGGAGCAGGTGACCATACTCGAGAAACTCTACCTTGCGGTGTCG AAGTCGACGAGCGTGGACATGCCGGGGTTGCCGGACGACCTCACGGCGGA CAAGATGGTGACTGTCGTGAGCGCGTTCTTCAAGGCATCGAACGACTGCA TCCGGGAGGTCGTAGAGGACCTGATCGCGCAGGCGAGGTTTTGGTGAAGG AGCAGGTGACCATACTCGAGAAACTCTACCTTGCGGTGTCGAAGTCGACG AGCGTGGACATGCCGGGGTTGCCGGACGACCTCACGGCGGACAAGATGGT GACTGTCGTGAGCGCGTTCTTCAAGGCATCGAACGACTGCATCCGGGAGG TCGTAGAGGACCTGATCGCGCAGGCGAGGTTTTGCCCTACCGACCCAGCC ACCGCCAGGGAGATGAGCGTGCTGTTGCAGCAACGGAACGGGCCGGCGAC GGATGCGGCCATCAAGCGCTTCAACTTGGACTCTAACCCCTACCGACCCA GCCACCGCCAGGGAGATGAGCGTGCTGTTGCAGCAACGGAACGGGCCGGC GACGGATGCGGCCATCAAGCGCTTCAACTTGGACTCTAACACGATCGGAC CCGCGATGGAGAAGTTCCAAGATCACCCAGAGATACAGAATGCTATTCGA GTGGGAGCCCAGCAGCAGCGCGAGATGTGAACGATCGGACCCGCGATGGA GAAGTTCCAAGATCACCCAGAGATACAGAATGCTATTCGAGTGGGAGCCC AGCAGCAGCGCGAGATGTGA back to top
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