mRNA_F-serratus_M_contig71.18296.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig71.18296.1
Unique NamemRNA_F-serratus_M_contig71.18296.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig71.18296.1 vs. uniprot
Match: A0A6H5LB87_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LB87_9PHAE)

HSP 1 Score: 511 bits (1315), Expect = 6.010e-176
Identity = 289/455 (63.52%), Postives = 320/455 (70.33%), Query Frame = 1
Query:    1 EDSNPSGLSFWQANYWVHVYRLSEEGPEQEMIDGAGEDEEVSACDQWVLPSVSLEGVWESLILEEGVKSQLLNYATTALLFTDKGVSKNIISCNRVVLLHGPPGTGKTSLCKALAHKLSIRLGNRYSNGQLLEINAHSLFSKWFSESGKLVQRLFEHIWELADDEDSLVCVLVDEVESLTAARSAAMGGNEPSDAVRVVNAVLTQIDNLRQKDNVLVLTTSNVSEAIDLAFVDRADIKQYIGLPNALARYQILRSCLEELDRVGIIKGPFNLP--YCRSHSLPTATELGLSSHSTPA---------------SPQAGSDASEAHARIANTNARVLEAGEG-----------------------------------------------------KNLVRIAELAEGLSGRALRKLPFQAHAFYVQRESCTLPEFLSAMAQAVEKELRDRQDLAAQR 1155
            +D  PSG+SFWQ ++ VH+YRLS E PEQEMIDGAGE+EE++ACDQWVLPS SLEGVWESL+LE GVK+ LL YAT+ALLFTDKGVSKN+IS N+VVLLHGPPGTGKTSLCKALAHKLSIRLG+RYS GQLLEINAHSLFSKWFSESGKLVQRLFEHI ELADDEDSLVCVLVDEVESLTAARSA+MGGNEPSDAVRVVNAVLTQIDNLR++DNVLVLTTSNVSEAIDLAFVDRADIKQYIGLP A ARYQ+L SCLEEL RVGII  P +L   Y ++  L                               P +G D S       + +A + E GEG                                                     + L+ +A LAEGLSGRALRKLPFQAHAFYVQR+SCTL EFLSAM +AV KEL DR+ L   R
Sbjct:   66 DDPLPSGVSFWQGDFRVHIYRLSHEEPEQEMIDGAGEEEEIAACDQWVLPSASLEGVWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSKWFSESGKLVQRLFEHILELADDEDSLVCVLVDEVESLTAARSASMGGNEPSDAVRVVNAVLTQIDNLRERDNVLVLTTSNVSEAIDLAFVDRADIKQYIGLPTAPARYQVLHSCLEELVRVGIISPPSHLQPSYSKAVELTAGAXXXXXXXXXXXXXXXXXXXXXXXXXXQPASGEDTSRRGCG-GSLSAGLWENGEGGGDGGREQVANGGGNSNGAVGLEPDGGGAVVVMDTDGVGGGAPQIRTGLHAGAEALLEVARLAEGLSGRALRKLPFQAHAFYVQRQSCTLAEFLSAMTRAVHKELGDRRSLETHR 519          
BLAST of mRNA_F-serratus_M_contig71.18296.1 vs. uniprot
Match: A0A835Z7T2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T2_9STRA)

HSP 1 Score: 432 bits (1110), Expect = 9.630e-146
Identity = 241/389 (61.95%), Postives = 291/389 (74.81%), Query Frame = 1
Query:    4 DSNPSGLSFWQANYWVHVYRLSEEGPEQEMIDGAGEDEEVSACDQWVLPSVSLEGVWESLILEEGVKSQLLNYATTALLFTDKGVSKNIISCNRVVLLHGPPGTGKTSLCKALAHKLSIRLGNRYSNGQLLEINAHSLFSKWFSESGKLVQRLFEHIWELADDEDSLVCVLVDEVESLTAARSAAMGGNEPSDAVRVVNAVLTQIDNLRQKDNVLVLTTSNVSEAIDLAFVDRADIKQYIGLPNALARYQILRSCLEELDRVGIIKGPFNLPYCRSH----SLPTATELGLSSHSTPAS-----PQAGSDASEAHARIANTNARVLEAGEGKNLVRIAELAEGLSGRALRKLPFQAHAFYVQRESCTLPEFLSAMAQAVEKELRDRQDL 1143
            DS    + FW  +  VH ++LS  G E+E++DG G+ E+V+A DQWVLP+  LEG+WESL+LE+ +K+QLL+YAT+ALLF+D+ VSK+IIS NRVVLLHGPPGTGKTSLCKALAHKL+IRLG R+   QLLEINAHSLFSKWFSESGKLV RLF HI ELA+DE +LVC+LVDEVESLT ARSAAM GNEPSDAVRVVNAVLTQID+LR +DNVLVLTTSNVS+AIDLAFVDRADIK  IGLP   ARY IL+SCL EL R GII  P ++P C S     +L T+ ++G+ + +            G    +     + T  RV+    G  L+++A LA+GLSGRALRKLPFQAHAF+V R S TL  +L A+ QAV  EL+ R  L
Sbjct:   69 DSGVDKVPFWHCDPCVHAFQLSPCGVEREVLDGDGDGEDVAAFDQWVLPAQELEGLWESLLLEDTIKAQLLDYATSALLFSDRQVSKHIISWNRVVLLHGPPGTGKTSLCKALAHKLAIRLGGRFQAAQLLEINAHSLFSKWFSESGKLVGRLFGHIAELAEDESTLVCILVDEVESLTTARSAAMSGNEPSDAVRVVNAVLTQIDSLRARDNVLVLTTSNVSKAIDLAFVDRADIKMLIGLPGVQARYSILQSCLAELMRTGIIDPPQHVPDCASELVRTALHTSCDMGVLAPARIGEGFIQLSYFGVLLFKTVGMSSATGCRVMSM--GILLLQVAALAQGLSGRALRKLPFQAHAFFVHRSSTTLHHYLDALLQAVRTELQRRAQL 455          
BLAST of mRNA_F-serratus_M_contig71.18296.1 vs. uniprot
Match: A0A8K1CN28_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CN28_PYTOL)

HSP 1 Score: 394 bits (1011), Expect = 5.880e-131
Identity = 214/383 (55.87%), Postives = 278/383 (72.58%), Query Frame = 1
Query:    1 EDSNPSGLSFWQANYWVHVYRLSEEGPEQEMIDGAGEDEEVSACDQWVLPSVSLEGVWESLILEEGVKSQLLNYATTALLFTDKGVSKNIISCNRVVLLHGPPGTGKTSLCKALAHKLSIRLGNRYSNGQLLEINAHSLFSKWFSESGKLVQRLFEHIWELADDEDSLVCVLVDEVESLTAARSAAMGGNEPSDAVRVVNAVLTQIDNLRQKDNVLVLTTSNVSEAIDLAFVDRADIKQYIGLPNALARYQILRSCLEELDRVGIIKGPFNLPYCRSHSLPTATELGLSSHSTPASPQAGSDASEAHARIANTNARVLEAGEGKNLVRIAELAEGLSGRALRKLPFQAHAFYVQRESCTLPEFLSAMAQAVEKELRDRQDLAA 1149
            ED+   G+  W+A+  VHV++LS+E P +E  +   +D+ VS C Q  LP+  L+G+WESLI +  VK  +L YATTA+LF+D  V+ +IIS NRVVLLHGPPGTGKTSLCKALA KLSIRL +R+ N  LLEINAHSLFSKWFSESGKLV +LF  I EL +DE++L+CVL+DEVESLTAAR AA+ G+EPSDA+RVVNA+LTQ+D L+   NVLVLTTSN++EAID+AFVDRADIKQYIGLP+  ARY+ILRSC+EEL RVG+I+G        S +L T  EL        AS +  +D   ++         V+ +     L+R+AE AEG SGR+LRKLPFQAHAF+VQ  + T+ +F+ ++++ V  E+  +Q L +
Sbjct:   83 EDAQNEGVPHWEAHVIVHVFKLSDEPPAEETAE---DDDNVSTCQQLALPATMLDGLWESLIYDTTVKRNVLEYATTAMLFSDSKVNPHIISWNRVVLLHGPPGTGKTSLCKALAQKLSIRLADRFPNSYLLEINAHSLFSKWFSESGKLVMKLFRQIQELVEDEEALICVLIDEVESLTAARKAALSGSEPSDAIRVVNALLTQLDALKNHPNVLVLTTSNITEAIDVAFVDRADIKQYIGLPSPHARYEILRSCVEELCRVGLIQGS-------SQTLLTYREL----QRKRASKKRVADQMASNGTFEGDEDLVVSSA----LLRVAESAEGFSGRSLRKLPFQAHAFFVQARTTTVIDFIQSLSRTVRHEIEQKQQLTS 447          
BLAST of mRNA_F-serratus_M_contig71.18296.1 vs. uniprot
Match: W2FTB2_PHYPR (AAA domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2FTB2_PHYPR)

HSP 1 Score: 391 bits (1005), Expect = 3.530e-130
Identity = 212/381 (55.64%), Postives = 272/381 (71.39%), Query Frame = 1
Query:    1 EDSNPSGLSFWQANYWVHVYRLSEEGPEQEMIDGAGEDEEVSACDQWVLPSVSLEGVWESLILEEGVKSQLLNYATTALLFTDKGVSKNIISCNRVVLLHGPPGTGKTSLCKALAHKLSIRLGNRYSNGQLLEINAHSLFSKWFSESGKLVQRLFEHIWELADDEDSLVCVLVDEVESLTAARSAAMGGNEPSDAVRVVNAVLTQIDNLRQKDNVLVLTTSNVSEAIDLAFVDRADIKQYIGLPNALARYQILRSCLEELDRVGIIKGPFNLPYCRSHSLPTATELGLSSHSTPASPQAGSDASEAHARIANTNARVLEAGEGKNLVRIAELAEGLSGRALRKLPFQAHAFYVQRESCTLPEFLSAMAQAVEKELRDRQDL 1143
            ++ N +G+   +A+ +VHV++LS+E P +E  D    DE+V+ C Q +LP+ S +G+W+SLI +  VK  +L+YA TA+LF+D  V+ +IIS NRVVLLHGPPGTGKTSLCKALAHKLSIRL +RY N  LLEINAHSLFSKWFSESGKLV +LF  I EL +DE+SL+CVL+DEVESLTAAR +A+ G+EPSDA+RVVNA+LTQ+D+L++  NVL+LTTSN++EAID+AFVDRADIKQYIGLP+  ARY+ILRSC+EEL RVGI+K P   P      L                P  G + +E            LE      L++ AE+AEG SGRALRKLPFQAHAF+VQ  + T  EF+  + Q +++E    Q L
Sbjct:   74 DEINETGVPKSEAHLFVHVFKLSDEPPAEETAD----DEDVTTCQQTILPASSFDGLWDSLIFDSAVKRNVLDYAMTAMLFSDSKVNPHIISWNRVVLLHGPPGTGKTSLCKALAHKLSIRLSSRYPNAVLLEINAHSLFSKWFSESGKLVMKLFRQIQELVEDEESLICVLIDEVESLTAARKSALSGSEPSDAIRVVNALLTQLDSLKRHSNVLILTTSNITEAIDVAFVDRADIKQYIGLPSGHARYEILRSCIEELRRVGILK-PSTQPLFAYQELMRRKASRKRMVDQMTCPPGGENGNED-----------LEL--SLELLQAAEMAEGFSGRALRKLPFQAHAFFVQTRTATASEFIHHLMQTIQREKEQNQQL 436          
BLAST of mRNA_F-serratus_M_contig71.18296.1 vs. uniprot
Match: A0A6A3M6S8_9STRA (Pachytene checkpoint protein 2 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3M6S8_9STRA)

HSP 1 Score: 388 bits (997), Expect = 4.540e-129
Identity = 212/383 (55.35%), Postives = 271/383 (70.76%), Query Frame = 1
Query:    1 EDSNPSGLSFWQANYWVHVYRLSEEGPEQEMIDGAGEDEEVSACDQWVLPSVSLEGVWESLILEEGVKSQLLNYATTALLFTDKGVSKNIISCNRVVLLHGPPGTGKTSLCKALAHKLSIRLGNRYSNGQLLEINAHSLFSKWFSESGKLVQRLFEHIWELADDEDSLVCVLVDEVESLTAARSAAMGGNEPSDAVRVVNAVLTQIDNLRQKDNVLVLTTSNVSEAIDLAFVDRADIKQYIGLPNALARYQILRSCLEELDRVGIIKGPFNLPYCRSHSLPTATELGLSSHSTPASPQAGSDASEAHARIANTNARVLEAGEGKNLVRIAELAEGLSGRALRKLPFQAHAFYVQRESCTLPEFLSAMAQAVEKELRDRQDLAA 1149
            E+ N  G+   +A  +VHV++LS+E P +E  D   +DE V+ C Q VLP+ S +G+W+SLI +  VK  +L+YA TA+LF+D  V+ +IIS NRVVLLHGPPGTGKTSLCKALAHKLSIRL +RY N  LLEINAHSLFSKWFSESGKLV +LF  I EL +DE+SLVCVL+DEVESLTAAR +A+ G+EPSDA+RVVNA+LTQ+D+L++  NVL+LTTSN++EAID+AFVDRADIKQYIGLP+  ARY+ILRSC+EEL RVGI++       C    L   T     +     SP    D               LE      L + AE+AE  SGRALRKLPFQAHAF+VQ  + ++ EF+  + Q +++E+  +Q L +
Sbjct:   70 EELNGVGVPRSEAQMFVHVFKLSDEAPAEETAD---DDENVTTCQQTVLPASSFDGLWDSLIFDTAVKKNVLDYAMTAMLFSDSKVNPHIISWNRVVLLHGPPGTGKTSLCKALAHKLSIRLSSRYPNAVLLEINAHSLFSKWFSESGKLVMKLFRQIQELVEDEESLVCVLIDEVESLTAARKSAVSGSEPSDAIRVVNALLTQLDSLKRYSNVLILTTSNITEAIDVAFVDRADIKQYIGLPSCHARYEILRSCVEELRRVGILQTSTQA-LCTHQELMRKTASRKRAAGQMTSPPDSED---------------LEL--STELSQAAEMAEAFSGRALRKLPFQAHAFFVQTRTLSVSEFICHLMQTIQREIEHKQQLTS 431          
BLAST of mRNA_F-serratus_M_contig71.18296.1 vs. uniprot
Match: A0A3M6VGA6_9STRA (AAA domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGA6_9STRA)

HSP 1 Score: 377 bits (968), Expect = 1.240e-124
Identity = 200/381 (52.49%), Postives = 270/381 (70.87%), Query Frame = 1
Query:    4 DSNPSGLSFWQANYWVHVYRLSEEGPEQEMIDGAGEDEEVSACDQWVLPSVSLEGVWESLILEEGVKSQLLNYATTALLFTDKGVSKNIISCNRVVLLHGPPGTGKTSLCKALAHKLSIRLGNRYSNGQLLEINAHSLFSKWFSESGKLVQRLFEHIWELADDEDSLVCVLVDEVESLTAARSAAMGGNEPSDAVRVVNAVLTQIDNLRQKDNVLVLTTSNVSEAIDLAFVDRADIKQYIGLPNALARYQILRSCLEELDRVGIIKGPFNLPYCRSHSLPTATELGLSSHSTPASPQAGSDASEAHARIANTNARVLEAGEGKNLVRIAELAEGLSGRALRKLPFQAHAFYVQRESCTLPEFLSAMAQAVEKELRDRQDLA 1146
            D N   +    A+ +VHV++LS+E P +E  D   +DE V+ C Q +LP+V+ +G+W+SLI +  VK  +L+YA TA+LF+D  V+ +IIS NRVVLLHGPPGTGKTSLCK+LA KLSIRL +RY N  LLEINAHSLFSKWFSESGKLV +LF  I EL +DE+S +CV++DEVESLTAAR +A+ G+EPSDA+RVVNA+LTQ+D L++  NVL+LTTSN++EAID+AFVDRADIKQYIGLP+  AR++ILRSC+EEL+RV I++      +     L   ++         + P A + + +    I               L++ AE+AEG SGRALRKLPFQAHAF+VQ  + ++ EF+  + Q + +E + +Q L+
Sbjct:   71 DDNEETVLRSNAHLFVHVFKLSDEAPAEETAD---DDESVTTCQQTMLPAVAFDGLWDSLIFDSSVKKNVLDYAMTAMLFSDSKVNPHIISWNRVVLLHGPPGTGKTSLCKSLAQKLSIRLSSRYPNAVLLEINAHSLFSKWFSESGKLVMKLFRQIQELVEDEESFICVMIDEVESLTAARKSAVSGSEPSDAIRVVNALLTQLDMLKRHSNVLILTTSNITEAIDVAFVDRADIKQYIGLPSCHARFEILRSCVEELNRVNILRPSMQPLFTYQEILRRRSKREWIVDEMTSPPGAENGSGDLELSI--------------QLLQAAEMAEGFSGRALRKLPFQAHAFFVQTHNPSVAEFIYYLIQTISRETKQKQQLS 434          
BLAST of mRNA_F-serratus_M_contig71.18296.1 vs. uniprot
Match: UPI0010FCA30A (pachytene checkpoint protein 2 homolog n=2 Tax=Acropora TaxID=6127 RepID=UPI0010FCA30A)

HSP 1 Score: 376 bits (966), Expect = 1.800e-124
Identity = 205/365 (56.16%), Postives = 260/365 (71.23%), Query Frame = 1
Query:   49 VHVYRLSEEGPEQEMIDGAGEDEEVSACDQWVLPSVSLEGVWESLILEEGVKSQLLNYATTALLFTDKGVSKNIISCNRVVLLHGPPGTGKTSLCKALAHKLSIRLGNRYSNGQLLEINAHSLFSKWFSESGKLVQRLFEHIWELADDEDSLVCVLVDEVESLTAARSAAMGGNEPSDAVRVVNAVLTQIDNLRQKDNVLVLTTSNVSEAIDLAFVDRADIKQYIGLPNALARYQILRSCLEELDRVGIIKGPFNLPYCRSHSLPTATELGLSSHSTPASPQAGSDASEAHARIANTNARVLEAGEGKNLVRIAELAEGLSGRALRKLPFQAHAFYVQRESCTLPEFLSAMAQAVEKELRDRQDL 1143
            +HV++L ++GP  E ++     E+++A + W+LPS    GVW+SLI +  VK+QL+NYATT LLF+D+GV+ N+IS NRVVLLHGPPGTGKTSLCKALA KLSIRL +RYS GQL+EIN+HSLFSKWFSESGKLV ++F+ I EL DD+D+LVCVL+DEVESLTAAR +AM G EPSDA+RVVNA+LTQID++++  NVLVLTTSNV+ AIDLAFVDRADIKQYIGLP+  A + I  SC+ EL RVGII              P    LG+                    R  N +A  L       L+ IA  + GLSGR LRK+PF AHA ++Q +S TLP FLSA+++ V+K+  DR++L
Sbjct:   94 IHVFQLHDDGPATEELE-----EDIAAANHWLLPSEDFHGVWDSLIFDSDVKAQLINYATTTLLFSDRGVNSNVISWNRVVLLHGPPGTGKTSLCKALAQKLSIRLSDRYSYGQLIEINSHSLFSKWFSESGKLVMKMFQKIQELIDDKDALVCVLIDEVESLTAARKSAMQGQEPSDAIRVVNALLTQIDHIKRFPNVLVLTTSNVTGAIDLAFVDRADIKQYIGLPSVNAVFSIYHSCITELMRVGIIS-------------PVQQILGVRDLEV--------------LRFINNDATNLSL----QLLEIARKSHGLSGRTLRKIPFLAHAGHIQTQSVTLPVFLSALSRTVDKQFEDRENL 422          
BLAST of mRNA_F-serratus_M_contig71.18296.1 vs. uniprot
Match: A0A833T2T7_PHYIN (ATPase family associated domain-containing protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T2T7_PHYIN)

HSP 1 Score: 377 bits (967), Expect = 1.820e-124
Identity = 205/381 (53.81%), Postives = 267/381 (70.08%), Query Frame = 1
Query:    1 EDSNPSGLSFWQANYWVHVYRLSEEGPEQEMIDGAGEDEEVSACDQWVLPSVSLEGVWESLILEEGVKSQLLNYATTALLFTDKGVSKNIISCNRVVLLHGPPGTGKTSLCKALAHKLSIRLGNRYSNGQLLEINAHSLFSKWFSESGKLVQRLFEHIWELADDEDSLVCVLVDEVESLTAARSAAMGGNEPSDAVRVVNAVLTQIDNLRQKDNVLVLTTSNVSEAIDLAFVDRADIKQYIGLPNALARYQILRSCLEELDRVGIIKGPFNLPYCRSHSLPTATELGLSSHSTPASPQAGSDASEAHARIANTNARVLEAGEGKNLVRIAELAEGLSGRALRKLPFQAHAFYVQRESCTLPEFLSAMAQAVEKELRDRQDL 1143
            E+++ +G+   +A+ +VHV++LS+E P +E  D    DE+V+ C Q +LP+ S + +W+SLI + GVK  +L+YA TA+LF+D  V+ +IIS NRVVLLHGPPGTGKTSLCKALAHKLSIRL +RY N  LLEINAHSLFSKWFSESGKLV +LF  I EL +DE+SL+CVL+DEVESLTAAR +A+ G EPSDA+RVVNA+LTQ+D+L++  NVL+LTTSN++EAID+AF+DRADIKQYIGLP+  ARY+ILRSC+EEL RV I++ P   P      L               SP    +               LE      L + A++AEG SGRALRKLPFQ HAF+VQ  + T  EF+  + Q +++E   +  L
Sbjct:   76 EETSEAGVPRSEAHLFVHVFKLSDEPPAEETAD----DEDVATCQQTILPATSFDELWDSLIFDTGVKRNVLDYAMTAMLFSDSKVNPHIISWNRVVLLHGPPGTGKTSLCKALAHKLSIRLSSRYPNAVLLEINAHSLFSKWFSESGKLVMKLFRQIQELVEDEESLICVLIDEVESLTAARKSALSGAEPSDAIRVVNALLTQLDSLKRHSNVLILTTSNITEAIDVAFIDRADIKQYIGLPSCHARYEILRSCIEELRRVRILQ-PSTQPLFAYQELMRRKASKKRMVDQITSPPGNEE---------------LEL--SMELRQAAKMAEGFSGRALRKLPFQTHAFFVQTRTATASEFIDHLMQTIQRENEQKLQL 434          
BLAST of mRNA_F-serratus_M_contig71.18296.1 vs. uniprot
Match: A0A1S3H9M9_LINUN (pachytene checkpoint protein 2 homolog n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3H9M9_LINUN)

HSP 1 Score: 374 bits (961), Expect = 1.130e-123
Identity = 202/377 (53.58%), Postives = 265/377 (70.29%), Query Frame = 1
Query:   22 LSFWQANYWVHVYRLSEEGPEQEMIDGAGEDEEVSACDQWVLPSVSLEGVWESLILEEGVKSQLLNYATTALLFTDKGVSKNIISCNRVVLLHGPPGTGKTSLCKALAHKLSIRLGNRYSNGQLLEINAHSLFSKWFSESGKLVQRLFEHIWELADDEDSLVCVLVDEVESLTAARSAAMGGNEPSDAVRVVNAVLTQIDNLRQKDNVLVLTTSNVSEAIDLAFVDRADIKQYIGLPNALARYQILRSCLEELDRVGIIKGPFNLPYCRSHSLPTATELGLSSHSTPASPQAGSDASEAHARIANTNARVLEAGEGKNLVRIAELAEGLSGRALRKLPFQAHAFYVQRESCTLPEFLSAMAQAVEKELRDRQDLAAQ 1152
            +  + A + +HVY+L+E+GP  E +D    +E+++A   W+LP+   +G+W+SL+ +  +K+QLL YA+T LLF+D+ V  NIIS NRVVLLHGPPGTGKTSLCKALA KL+IRL +RYS GQL+EIN+HSLFSKWFSESGKLV ++F+ I EL DD ++LVCVL+DEVESLTAAR A+M GNEPSDA+RVVNA+LTQID +++  NV++LTTSNV+ AIDLAFVDRADIKQYIG P+  A Y I +SCL EL R GII  P  L   R      A E+                      R +  NA  L       L +IA  +EGLSGR LRK+PF +HA Y+QR + TL E+L A+++AV+++  +R DL+ +
Sbjct:   88 IDLYSAFFLIHVYQLNEDGPASEELD----EEDLAAASHWLLPTRDFDGLWDSLVFDSDIKNQLLQYASTTLLFSDRKVDSNIISWNRVVLLHGPPGTGKTSLCKALAQKLAIRLSDRYSYGQLIEINSHSLFSKWFSESGKLVMKMFQKIQELIDDPEALVCVLIDEVESLTAARKASMSGNEPSDAIRVVNALLTQIDQIKRNPNVIILTTSNVTGAIDLAFVDRADIKQYIGPPSPAAIYNIYQSCLNELMRSGIISPPQQLIDMR------ALEV---------------------MRFSENNATKLSL----RLRQIAIKSEGLSGRTLRKIPFLSHAMYLQRPATTLEEYLGALSRAVDRQFEERLDLSKE 429          
BLAST of mRNA_F-serratus_M_contig71.18296.1 vs. uniprot
Match: A0A0P1AZ52_PLAHL (Thyroid receptor-interacting protein 13 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AZ52_PLAHL)

HSP 1 Score: 367 bits (943), Expect = 5.900e-121
Identity = 199/382 (52.09%), Postives = 271/382 (70.94%), Query Frame = 1
Query:    1 EDSNPSGLSFWQANYWVHVYRLSEEGPEQEMIDGAGEDEEVSACDQWVLPSVSLEGVWESLILEEGVKSQLLNYATTALLFTDKGVSKNIISCNRVVLLHGPPGTGKTSLCKALAHKLSIRLGNRYSNGQLLEINAHSLFSKWFSESGKLVQRLFEHIWELADDEDSLVCVLVDEVESLTAARSAAMGGNEPSDAVRVVNAVLTQIDNLRQKDNVLVLTTSNVSEAIDLAFVDRADIKQYIGLPNALARYQILRSCLEELDRVGII-KGPFNLPYCRSHSLPTATELGLSSHSTPASPQAGSDASEAHARIANTNARVLEAGEGKNLVRIAELAEGLSGRALRKLPFQAHAFYVQRESCTLPEFLSAMAQAVEKELRDRQDL 1143
            E+++ SG+   +A+ +VHVY+L +E P +E +D    +E+V+ C Q +LP+ + +G+WESLI +  VK  +L+YA TA+LF+D  V+ +IIS NRVVLLHGPPGTGKTSLCKALA KLSIRL +RY N  LLE+NAHSLFSKWFSESGKLV +LF  I EL +D+++L+CVL+DEVESL AAR +A  G++PSDA+RVVNA+LTQ+D+L++  NVL+LTTSN++EAID+AF+DRADIKQ+IGLP   ARY+ILRSC+ EL RV ++     +L      +  TA+  GL +  T  + +A            N    VL      NL++ A+ AEG SGRALRKLPFQAHA +VQ +  ++ EF   ++  ++ E   +Q L
Sbjct:   66 EEASGSGILRAKAHLYVHVYKLCDEVPAEETMD----NEDVATCQQTILPAANYDGLWESLIFDTPVKKNILDYAMTAMLFSDHKVNSHIISWNRVVLLHGPPGTGKTSLCKALAQKLSIRLSSRYPNAVLLEVNAHSLFSKWFSESGKLVMKLFCQIQELVEDDEALICVLIDEVESLAAARKSAASGSDPSDAIRVVNALLTQLDSLKRHSNVLILTTSNITEAIDVAFIDRADIKQFIGLPTCHARYEILRSCIHELQRVNLLLPSSQSLMSFEELTRKTASRKGLMNEKTSLAEEAED----------NNEDFVLSL----NLMQTADSAEGFSGRALRKLPFQAHASFVQTQMVSVSEFTRYLSLTIQSEKMQKQQL 429          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig71.18296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LB87_9PHAE6.010e-17663.52AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z7T2_9STRA9.630e-14661.95P-loop containing nucleoside triphosphate hydrolas... [more]
A0A8K1CN28_PYTOL5.880e-13155.87Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2FTB2_PHYPR3.530e-13055.64AAA domain-containing protein n=9 Tax=Phytophthora... [more]
A0A6A3M6S8_9STRA4.540e-12955.35Pachytene checkpoint protein 2 n=3 Tax=Phytophthor... [more]
A0A3M6VGA6_9STRA1.240e-12452.49AAA domain-containing protein n=1 Tax=Peronospora ... [more]
UPI0010FCA30A1.800e-12456.16pachytene checkpoint protein 2 homolog n=2 Tax=Acr... [more]
A0A833T2T7_PHYIN1.820e-12453.81ATPase family associated domain-containing protein... [more]
A0A1S3H9M9_LINUN1.130e-12353.58pachytene checkpoint protein 2 homolog n=2 Tax=Lin... [more]
A0A0P1AZ52_PLAHL5.900e-12152.09Thyroid receptor-interacting protein 13 n=1 Tax=Pl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig71contigF-serratus_M_contig71:585218..590285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score483.4
Seed ortholog evalue9e-134
Seed eggNOG ortholog2880.D7FYR6
Preferred nameTRIP13
KEGG rclassRC00376,RC00563
KEGG koko:K00413,ko:K01810,ko:K22399
KEGG ReactionR02739,R02740,R03321
KEGG Pathwayko00010,ko00030,ko00190,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00010,map00030,map00190,map00500,map00520,map01100,map01110,map01120,map01130,map01200,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00001,M00004,M00114,M00151,M00152
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000166,GO:0000278,GO:0000280,GO:0001556,GO:0001673,GO:0003006,GO:0003674,GO:0003712,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007093,GO:0007094,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007140,GO:0007141,GO:0007143,GO:0007144,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007292,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0009994,GO:0010467,GO:0010556,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016070,GO:0017076,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030071,GO:0030154,GO:0030554,GO:0031323,GO:0031326,GO:0031577,GO:0032501,GO:0032502,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033313,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0035825,GO:0036094,GO:0040020,GO:0042138,GO:0042802,GO:0043073,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0044703,GO:0045132,GO:0045143,GO:0045786,GO:0045835,GO:0045839,GO:0045841,GO:0045930,GO:0046483,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048477,GO:0048515,GO:0048519,GO:0048523,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051252,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051598,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060255,GO:0061982,GO:0065007,GO:0070192,GO:0070193,GO:0071173,GO:0071174,GO:0071695,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0097159,GO:0097367,GO:0097659,GO:0098813,GO:0140013,GO:0140110,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903046,GO:1903047,GO:1903506,GO:1905818,GO:1905819,GO:2000241,GO:2000242,GO:2000816,GO:2001141,GO:2001251
EggNOG free text desc.homologous recombination
EggNOG OGsCOG0464@1,KOG0744@2759
EC5.3.1.9
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04147
Exons9
Model size1294
Cds size1071
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932181.3665411-UTR-F-serratus_M_contig71:585217..5853501622932181.3665411-UTR-F-serratus_M_contig71:585217..585350Fucus serratus maleUTRF-serratus_M_contig71 585218..585350 -
1690964187.0251248-UTR-F-serratus_M_contig71:585217..5853501690964187.0251248-UTR-F-serratus_M_contig71:585217..585350Fucus serratus maleUTRF-serratus_M_contig71 585218..585350 -
1622932181.5636752-UTR-F-serratus_M_contig71:589764..5897821622932181.5636752-UTR-F-serratus_M_contig71:589764..589782Fucus serratus maleUTRF-serratus_M_contig71 589765..589782 -
1690964187.156735-UTR-F-serratus_M_contig71:589764..5897821690964187.156735-UTR-F-serratus_M_contig71:589764..589782Fucus serratus maleUTRF-serratus_M_contig71 589765..589782 -
1622932181.587156-UTR-F-serratus_M_contig71:590213..5902851622932181.587156-UTR-F-serratus_M_contig71:590213..590285Fucus serratus maleUTRF-serratus_M_contig71 590214..590285 -
1690964187.1740592-UTR-F-serratus_M_contig71:590213..5902851690964187.1740592-UTR-F-serratus_M_contig71:590213..590285Fucus serratus maleUTRF-serratus_M_contig71 590214..590285 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932181.390823-CDS-F-serratus_M_contig71:585350..5854491622932181.390823-CDS-F-serratus_M_contig71:585350..585449Fucus serratus maleCDSF-serratus_M_contig71 585351..585449 -
1690964187.0406752-CDS-F-serratus_M_contig71:585350..5854491690964187.0406752-CDS-F-serratus_M_contig71:585350..585449Fucus serratus maleCDSF-serratus_M_contig71 585351..585449 -
1622932181.4069965-CDS-F-serratus_M_contig71:586005..5863511622932181.4069965-CDS-F-serratus_M_contig71:586005..586351Fucus serratus maleCDSF-serratus_M_contig71 586006..586351 -
1690964187.0543594-CDS-F-serratus_M_contig71:586005..5863511690964187.0543594-CDS-F-serratus_M_contig71:586005..586351Fucus serratus maleCDSF-serratus_M_contig71 586006..586351 -
1622932181.4244807-CDS-F-serratus_M_contig71:586948..5870491622932181.4244807-CDS-F-serratus_M_contig71:586948..587049Fucus serratus maleCDSF-serratus_M_contig71 586949..587049 -
1690964187.0656147-CDS-F-serratus_M_contig71:586948..5870491690964187.0656147-CDS-F-serratus_M_contig71:586948..587049Fucus serratus maleCDSF-serratus_M_contig71 586949..587049 -
1622932181.441352-CDS-F-serratus_M_contig71:587614..5877041622932181.441352-CDS-F-serratus_M_contig71:587614..587704Fucus serratus maleCDSF-serratus_M_contig71 587615..587704 -
1690964187.0870209-CDS-F-serratus_M_contig71:587614..5877041690964187.0870209-CDS-F-serratus_M_contig71:587614..587704Fucus serratus maleCDSF-serratus_M_contig71 587615..587704 -
1622932181.4674635-CDS-F-serratus_M_contig71:588279..5883781622932181.4674635-CDS-F-serratus_M_contig71:588279..588378Fucus serratus maleCDSF-serratus_M_contig71 588280..588378 -
1690964187.1041017-CDS-F-serratus_M_contig71:588279..5883781690964187.1041017-CDS-F-serratus_M_contig71:588279..588378Fucus serratus maleCDSF-serratus_M_contig71 588280..588378 -
1622932181.4886312-CDS-F-serratus_M_contig71:588756..5888981622932181.4886312-CDS-F-serratus_M_contig71:588756..588898Fucus serratus maleCDSF-serratus_M_contig71 588757..588898 -
1690964187.1172209-CDS-F-serratus_M_contig71:588756..5888981690964187.1172209-CDS-F-serratus_M_contig71:588756..588898Fucus serratus maleCDSF-serratus_M_contig71 588757..588898 -
1622932181.5126007-CDS-F-serratus_M_contig71:589339..5894551622932181.5126007-CDS-F-serratus_M_contig71:589339..589455Fucus serratus maleCDSF-serratus_M_contig71 589340..589455 -
1690964187.1298742-CDS-F-serratus_M_contig71:589339..5894551690964187.1298742-CDS-F-serratus_M_contig71:589339..589455Fucus serratus maleCDSF-serratus_M_contig71 589340..589455 -
1622932181.5346513-CDS-F-serratus_M_contig71:589686..5897641622932181.5346513-CDS-F-serratus_M_contig71:589686..589764Fucus serratus maleCDSF-serratus_M_contig71 589687..589764 -
1690964187.1432393-CDS-F-serratus_M_contig71:589686..5897641690964187.1432393-CDS-F-serratus_M_contig71:589686..589764Fucus serratus maleCDSF-serratus_M_contig71 589687..589764 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig71.18296.1prot_F-serratus_M_contig71.18296.1Fucus serratus malepolypeptideF-serratus_M_contig71 585351..589764 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig71.18296.1

>prot_F-serratus_M_contig71.18296.1 ID=prot_F-serratus_M_contig71.18296.1|Name=mRNA_F-serratus_M_contig71.18296.1|organism=Fucus serratus male|type=polypeptide|length=357bp
MIDGAGEDEEVSACDQWVLPSVSLEGVWESLILEEGVKSQLLNYATTALL
FTDKGVSKNIISCNRVVLLHGPPGTGKTSLCKALAHKLSIRLGNRYSNGQ
LLEINAHSLFSKWFSESGKLVQRLFEHIWELADDEDSLVCVLVDEVESLT
AARSAAMGGNEPSDAVRVVNAVLTQIDNLRQKDNVLVLTTSNVSEAIDLA
FVDRADIKQYIGLPNALARYQILRSCLEELDRVGIIKGPFNLPYCRSHSL
PTATELGLSSHSTPASPQAGSDASEAHARIANTNARVLEAGEGKNLVRIA
ELAEGLSGRALRKLPFQAHAFYVQRESCTLPEFLSAMAQAVEKELRDRQD
LAAQRR*
back to top

mRNA from alignment at F-serratus_M_contig71:585218..590285-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig71.18296.1 ID=mRNA_F-serratus_M_contig71.18296.1|Name=mRNA_F-serratus_M_contig71.18296.1|organism=Fucus serratus male|type=mRNA|length=5068bp|location=Sequence derived from alignment at F-serratus_M_contig71:585218..590285- (Fucus serratus male)
GAGGATTCCAACCCTTCTGGATTGAGCTTTTGGCAGGCGAACTACTGGGT CCACGTGTACCGCTTGTCTGAGGTGATCGATCTGCTGATCTGCTTTATGA TTTTCACTTCCGAATTGTGACATCTCACATCTCCCGCAAGGGCTGGTTTG GTTCTTTCCAAAATGGGAGGGAAACGTCTTGAGCCCACGGCTGCGAAGTT CTGGCAAGACATGTGGGACTACTGATGTACTCGGCGTATGTTGTACCGTG TTGTAGTTGGAGTAATTAGCAGGGTAAGGTAAGGTATGCGATTCGGGCGC ATCCTTGGGGACGTCTTCTGACCCCGAACTTGTCCGACGCAGGCCGTAGC GACTCAGCTTGCGGTCTACCGCGGAGCTCAGCATCAGCGCGAAGAAAAAA CCCATACGCACGCGAAATTCCACCATCACCAGCTATTAATAATAGTAATA GAAGTTACAATATAATAGTATGTCCGTTTGCTGGCGATTCACGAACTTCA CAGGAAGGGCCCGAACAAGAGATGATTGACGGGGCAGGAGAGGACGAGGA AGTATCTGCATGCGACCAATGGGTGCTCCCATCGGTTAGCCTAGAAGGGG TGAGTTTTTGGTTGCTGCTAAAGGCCCTGATCTTCCCACGCTCAGCCGTG CGACTTCTGTTCCATTTGTTTGATTTGGTCTGCTTCGCTTTCAACGGCGA GTTCTAGCGATGATCTCGCACCAATTTGACGTACACGATCACGTACCATA TCATACTGTAACCGGCACACGTTCTGAGGGCATTTCATGCGTGTTATCTC ATTATATATATTAAATTACTCCCCGCCAAGGTGTGGGAAAGCCTGATTCT CGAGGAAGGAGTCAAAAGCCAGCTCTTGAACTACGCTACTACGGCACTGC TTTTCACGGACAAGGGTGTCAGCAAAAATATCATCTCCTGTAATAGGTGA GGTAGGGTAGGGTAGGGTAGCTATTACTAATTATAAGTACAACACAGTAT TAACAGCTTCGCTTGAAATCGCCACGAAATCATGAGAAGTGATATTGAGT GGAAACCGTGGAATCGTGATGAAAACATTATGAAATCATTTAATTTATCA TTAATTGTTCTAAAATCCTGAAATCATATTTTCGATGTTTTAAAATCATC TGGAAATTGCAAGAACACCGCGTCAGATATCTCTACAAAGACTGTCAGAC TAAGCAAGGATGTGCGTCGTGTGTGTGCACCGTGGCATTTCTCGAACACT ATAATATGTGCACTGTCACTATTACTGCCACTTCTGCGGTATTCATAGTT AGAGTAATATAATAGGAATAGTAATATTGTACCTGGTATGGCTGTATAAG ACCTTTCTTTTTTTGCTTTCTTTCTTTCCTTCCGTAGGGTAGTGTTGCTC CATGGGCCCCCGGGCACAGGAAAGACTTCGCTATGCAAAGCCTTGGCGCA CAAGCTCTCCATTCGCCTCGGGAACAGATACTCTAACGGACAGCTTCTCG AGATTAACGCCCATAGCCTTTTCAGCAAGGTAAAAATACTTGACTCGCGA CGCGCGTGTCCAATCCTAATCGTTGTGAAGTTCTTTGACACACGTGCGCC CTCCTATCACCATTTTAGATCATTTTAGATGATTCGGTCCCATGTCCATG TGATCGGAAACGAAATTTCTGCCAATCAATTTTGAGAGAGCGTTTTCCGT CGAATGTTATTTCATTCTCTTGAAATCGTCATTACGTCTGTAACAGTAGC CTCCTGAGTTTATCAGTCTGCAAGACTGCCCTTCAACGCCTTCAACACCG TGGTTAACGCTCTGTGTTGGTGAGTGTAGCGATGTGCCAACTAAAGTTTC ATTGACAAGTTATTCCCTGCTGCATGCACCGAACGTCGTCGCTTGTCATC TCTCAAGTGGTTCTCGGAGAGCGGCAAGCTGGTGCAGCGTCTTTTCGAGC ACATTTGGGAGCTGGCGGACGATGAGGACAGCCTTGTGTGCGTCCTCGTC GACGAGGTGTAAATAGTGGTGTATAGTATAGTCTAATACCAGTAGAACGG TACACCTATGGTGTTTACGGTTGTGCGAAACTGTTCCAAAGTTTTCCTGT TTGAGAGTGCCTCTCTCGCCAAGTAACAAAACGTAACGTAGTATAACATA ACATGATTCACACTCTGATTCACACTTTTCGTCGTGCCAGCTATTATATT ACAGTTTATTTTATTATATGAATAGCATGAGCATGATATCAGGTAATCTT CGCCTTGGGCCTAGGTACTCTACTTGTATTGCGCTGGGAAAGCTATTAAT AGCATGATGCCGTGATGCGCATAGCTGGCCAGGATGAGGATGTTTAGGAT GGTTAGGATGGTTGGACCGCACCACGGTGGGTGTTGGTGTTGGTGTTGAC GCTTTTTTCCGTGTCAAAGAAAATCTTGCGATTTCGAATAGAGCTCTAGC TTCGTAGACTAATTGTCAAGAGTTTCCCTTGGGTAATCTTAATTCCTTGT CGTATACTCGTACGGTATCTATTTACATTACTATGTTTATATTATTTAAT AGTATCATCGATCGTTTTGAGGTTATCACAGGTGGAAAGCCTAACGGCGG CAAGGTCGGCAGCCATGGGCGGAAACGAACCCTCAGACGCGGTGCGAGTG GTCAACGCCGTGCTGACGCAGGTACTTTACGTATGGTACTATTAATAGTT GTGCACCATCAAAAGTCGAAGGTGTAGAACCATGTATAGAGCTCTAAATG GTACACTCCTCTGCCATGTAGCTGTAGCTAAGGTACTAGACTATACAGTA TTACGGTACTATTTATGTCTGTTGAAGGTGTCTTGTGTTGTGTTAACGAC AACCAGTGATGTTCAATTTTACGTGCAGTGCAGCGCAGTCGACTTTTTCA ACGATCGAGTCCAGAATAATGTTTATAATTGTATTGTATTGTGAGGTACC AACCGACATAACCGCCTTGCGATCCTTCTTTGTGCTGTAATATAATGGAA TGTACCAGTAATGTAATGTACCAGTAATGTACCAGTACATGATTGCACCG TCATCGTCATCGCGATGTCATTATGTACCGATACCGGTTAAGAGTCACTA ATGTTTGTTGTTTGTGGTTGATGTCTTTATCTTGTCTTGTCTTGTCCTAT CTTACCTTATCCCATCTTGTTTATAATGTTCGGGAACTTTTCGTCTTGCG CGTCGCGTCGAACATCGTCGTCGTCGTCGTCGTCAGATCGACAACCTTCG TCAGAAAGATAACGTTTTGGTACTGACAACTTCCAACGTGTCTGAGGCCA TCGATCTGGCCTTCGTTGACCGAGCTGACATCAAGCAGTAAGTTGGGATA TCGGTGGAGTCATTATCGTCGTCTGGCGCCCAGTAATAGTAATCGATACC CTCGATGGCTTTACAGCGACGTAACGATGGAAACCGTGTTTGACGATTGT TGATATTTCTTCCCGTGTTTGATGTTTTTGATCTTCATCTTCATCTTCAT GTCCATCTTAATGTTCACCCATCAGACTTCCAATCGATGTTTTTACTTCC TCGAGCGCCGAGTTCCCGAGCCACTCACCCCAGCATGTATAAATATTACC TGGTATTATTAATATTAGTAGCTTAGTATAGTATAATAACACGGTAATAC GCGGGAAAGTGCGATTTACTTCATCACTCGACATCACAGCGAATCGTTCG CACGGTACGTATCCTCGGCCTGGTCCCGGTAGCGCGCAATCCACAACCAC GGGAGACCGTAGACCAAAACCAAACTATGTATTTTATTTCCTCTCCTCTC TTTGACTCGGACCTCCGACCATGACCATTCATATCTTACATCTCATATCT TATACCGGTATATTATATCTCATATCCCCCCCCACACACACTTCGTTTTC CTCTTTTTTCCTTTTTTTCTTTTGTTGATTTAAGGTACATCGGTCTCCCT AACGCCTTGGCACGATATCAGATCCTTCGCTCCTGCCTTGAAGAGCTCGA TCGAGTGGGCATAATCAAGGGCCCTTTCAACCTACCTTACTGCCGTTCCC ATTCGTTACCGACGGCCACCGAGCTTGGGCTATCCTCGCACTCGACGCCT GCTTCGCCGCAAGCGGGTTCGGACGCGTCCGAGGCTCACGCACGTATCGC TAACACTAACGCTAGGGTTCTTGAAGCGGGCGAAGGGAAGAATCTTGTAC GAATAGCGGAGCTAGCGGAGGGACTAAGCGGACGGGCATTACGAAAACTC CCGTTCCAGGCACACGCCTTCTATGTTCAAGTGAGAGTTTCAAGTCGCAA GTACCGGTATGCGTATTGATATTAATATTGATAGCATGCTTTGGTCGCCA GCCGTGGGGTACCGTACTGTATTGCACATGATGCAGGACGAACGGTCGTC GTTCTTGCGAGGTTTTGTCTCCTGTACAGTTTGTACTATGTACTATTTTA TTGCTTCCAGTGTATGTTAACGCGATATCGATTTATGTTACCGTGACCGA TGTGAAACCAGACTCGCAGAGCTTCGAGTACGGTGGCGCGTAGCCGAAAA ATAAGCAAAAAACGGTAGCCCGGCGGGAAGTTGTGGCGACCGTGTGCTGT GCTGTCTGTGCTTAACTCTAGAGCATAATTTCAGGACCGCGGCCTTGGAA AAAATATGTGGTTGCACTTAACCAGAATAACATGGCAGGCACGAAGTACA ATAATTGCGGCTGTCACGACCTCCCAAGTCTTTTGCCCCAGGAATCTCGT GACAACATCTTAACGCGTCATGTCATTTCTTCTTGCCGTTTCCTCCTGCG CCGACTCCACCTGCCTGTTGCCTGTTCGGACTTAAGCGGGAATCCTGCAC GTTGCCGGAGTTCCTCTCAGCGATGGCCCAAGCGGTCGAGAAGGAATTGA GGGACCGACAAGATTTGGCGGCACAGCGCCGATGATTGCCATGATTTTTC TTTCTGAATTTATTGAATCACTTGTTGAGACATTCTCTTTCCAGAGGACA TACGTGTCCATGAAGAGGCGTACAGTATGAAAAGAGTTTTGTTGTTGCAG AGTTTGGGTGACTTCCTC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig71:585218..590285-

>mRNA_F-serratus_M_contig71.18296.1 ID=mRNA_F-serratus_M_contig71.18296.1|Name=mRNA_F-serratus_M_contig71.18296.1|organism=Fucus serratus male|type=CDS|length=2142bp|location=Sequence derived from alignment at F-serratus_M_contig71:585218..590285- (Fucus serratus male)
ATGATTGACGGGGCAGGAGAGGACGAGGAAGTATCTGCATGCGACCAATG
GGTGCTCCCATCGGTTAGCCTAGAAGGGATGATTGACGGGGCAGGAGAGG
ACGAGGAAGTATCTGCATGCGACCAATGGGTGCTCCCATCGGTTAGCCTA
GAAGGGGTGTGGGAAAGCCTGATTCTCGAGGAAGGAGTCAAAAGCCAGCT
CTTGAACTACGCTACTACGGCACTGCTTTTCACGGACAAGGGTGTCAGCA
AAAATATCATCTCCTGTAATAGGTGTGGGAAAGCCTGATTCTCGAGGAAG
GAGTCAAAAGCCAGCTCTTGAACTACGCTACTACGGCACTGCTTTTCACG
GACAAGGGTGTCAGCAAAAATATCATCTCCTGTAATAGGGTAGTGTTGCT
CCATGGGCCCCCGGGCACAGGAAAGACTTCGCTATGCAAAGCCTTGGCGC
ACAAGCTCTCCATTCGCCTCGGGAACAGATACTCTAACGGACAGCTTCTC
GAGATTAACGCCCATAGCCTTTTCAGCAAGGGTAGTGTTGCTCCATGGGC
CCCCGGGCACAGGAAAGACTTCGCTATGCAAAGCCTTGGCGCACAAGCTC
TCCATTCGCCTCGGGAACAGATACTCTAACGGACAGCTTCTCGAGATTAA
CGCCCATAGCCTTTTCAGCAAGTGGTTCTCGGAGAGCGGCAAGCTGGTGC
AGCGTCTTTTCGAGCACATTTGGGAGCTGGCGGACGATGAGGACAGCCTT
GTGTGCGTCCTCGTCGACGAGTGGTTCTCGGAGAGCGGCAAGCTGGTGCA
GCGTCTTTTCGAGCACATTTGGGAGCTGGCGGACGATGAGGACAGCCTTG
TGTGCGTCCTCGTCGACGAGGTGGAAAGCCTAACGGCGGCAAGGTCGGCA
GCCATGGGCGGAAACGAACCCTCAGACGCGGTGCGAGTGGTCAACGCCGT
GCTGACGCAGGTGGAAAGCCTAACGGCGGCAAGGTCGGCAGCCATGGGCG
GAAACGAACCCTCAGACGCGGTGCGAGTGGTCAACGCCGTGCTGACGCAG
ATCGACAACCTTCGTCAGAAAGATAACGTTTTGGTACTGACAACTTCCAA
CGTGTCTGAGGCCATCGATCTGGCCTTCGTTGACCGAGCTGACATCAAGC
AATCGACAACCTTCGTCAGAAAGATAACGTTTTGGTACTGACAACTTCCA
ACGTGTCTGAGGCCATCGATCTGGCCTTCGTTGACCGAGCTGACATCAAG
CAGTACATCGGTCTCCCTAACGCCTTGGCACGATATCAGATCCTTCGCTC
CTGCCTTGAAGAGCTCGATCGAGTGGGCATAATCAAGGGCCCTTTCAACC
TACCTTACTGCCGTTCCCATTCGTTACCGACGGCCACCGAGCTTGGGCTA
TCCTCGCACTCGACGCCTGCTTCGCCGCAAGCGGGTTCGGACGCGTCCGA
GGCTCACGCACGTATCGCTAACACTAACGCTAGGGTTCTTGAAGCGGGCG
AAGGGAAGAATCTTGTACGAATAGCGGAGCTAGCGGAGGGACTAAGCGGA
CGGGCATTACGAAAACTCCCGTTCCAGGCACACGCCTTCTATGTTCAAGT
ACATCGGTCTCCCTAACGCCTTGGCACGATATCAGATCCTTCGCTCCTGC
CTTGAAGAGCTCGATCGAGTGGGCATAATCAAGGGCCCTTTCAACCTACC
TTACTGCCGTTCCCATTCGTTACCGACGGCCACCGAGCTTGGGCTATCCT
CGCACTCGACGCCTGCTTCGCCGCAAGCGGGTTCGGACGCGTCCGAGGCT
CACGCACGTATCGCTAACACTAACGCTAGGGTTCTTGAAGCGGGCGAAGG
GAAGAATCTTGTACGAATAGCGGAGCTAGCGGAGGGACTAAGCGGACGGG
CATTACGAAAACTCCCGTTCCAGGCACACGCCTTCTATGTTCAACGGGAA
TCCTGCACGTTGCCGGAGTTCCTCTCAGCGATGGCCCAAGCGGTCGAGAA
GGAATTGAGGGACCGACAAGATTTGGCGGCACAGCGCCGATGACGGGAAT
CCTGCACGTTGCCGGAGTTCCTCTCAGCGATGGCCCAAGCGGTCGAGAAG
GAATTGAGGGACCGACAAGATTTGGCGGCACAGCGCCGATGA
back to top