mRNA_F-serratus_M_contig707.18275.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig707.18275.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 120 bits (302), Expect = 9.680e-28 Identity = 62/140 (44.29%), Postives = 91/140 (65.00%), Query Frame = 1
Query: 52 AMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATTAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNQ 471
AM + EWRKA E E+ + V+++V RP+D+ +IG+K ++K K G DG++EKYK RLVAQGF QVEG+ Y E ++P + SIR+LLA A D E+ D + AFL +++EEIY+++P + AV RL +
Sbjct: 1001 AMSQEDAAEWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKK 1140
BLAST of mRNA_F-serratus_M_contig707.18275.1 vs. uniprot
Match: A0A438FXG1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FXG1_VITVI) HSP 1 Score: 120 bits (300), Expect = 1.440e-27 Identity = 82/248 (33.06%), Postives = 124/248 (50.00%), Query Frame = 1
Query: 28 SEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATTAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPG---------AVGRLNQGHLRTHWG---ITYGGQGCGLCMEAYT------------------DSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYV 681
++P + Q M E + W A + EM M N V+D V P IG K ++K K G IE+YK +LV++GF Q EG+ YTE +SP S+ ++LA A D EL+ + + AFL +++EE+Y++ PE F G ++ L Q + W ++ + + YT DSDF C+D+R+S+S + MLA GAISW S Q +TA T EA+++
Sbjct: 267 NDPESFSQTMSCKESELWYNAMKDEMSSMKCNDVWDLVELPNGAKTIGCKWVFKTKKDSLGNIERYKAKLVSKGFTQKEGIDYTETFSPVSKKDSLHIILALVAHFDFELQQMNVKTAFLNGELEEEVYMKQPEGFPSSDGEQLACKLKKSIYGLKQASCQWIWVRHLMSLALRSIETDFKVYTRPDIAFAVGMLGRYQSNPDSDFAGCVDSRKSISRYIFMLADGAISWRSVKQTMTATSTMEAKFI 514
BLAST of mRNA_F-serratus_M_contig707.18275.1 vs. uniprot
Match: A5ANL2_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5ANL2_VITVI) HSP 1 Score: 119 bits (298), Expect = 2.510e-27 Identity = 82/217 (37.79%), Postives = 115/217 (53.00%), Query Frame = 1
Query: 49 QAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATTAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQ--EFPGAVGRLNQG----HLRTHWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYV 681
Q +S + ++W +A + EM M +N V+D V PK IG K ++K K G I +YK RLVA+GF Q E + Y E +S S S R+++A A D EL D + FL +IDE IY+ E F+ + V +L + R G + L + Y+DSDF CLD+RRS SG + MLA GAISW S Q + A+ E E++
Sbjct: 347 QVKQSSDSEKWIEAMKDEMKSMKDNGVWDLVELPKGVKPIGCKWIFKAKHDSKGNIVRYKARLVAKGFTQKEDIDYKETFSSVSSKDSFRIIMALMAHYDLELHQMDDKTVFLNGNIDETIYMVQLENFECNDSKQLVCKLKRSIYGLSRRPDNGTESLIRSSHLEIMGYSDSDFAGCLDSRRSTSGYIFMLAGGAISWKSFKQTLIASSIMEVEFI 563
BLAST of mRNA_F-serratus_M_contig707.18275.1 vs. uniprot
Match: A0A2N9EWH4_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EWH4_FAGSY) HSP 1 Score: 118 bits (296), Expect = 5.530e-27 Identity = 82/228 (35.96%), Postives = 119/228 (52.19%), Query Frame = 1
Query: 25 VSEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATTAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQ---------EFPGAVGRLNQGHLRTHWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYV 681
V +P + QA++S + +W A E+ M N V+D V P IG K ++K K GKIE+YK RLVA+GF Q EGV+Y E +S S S R+++A A D EL D ++ FL D+ E++Y+ P+ FQ + ++ L Q + + + Y D+D+ D +S SG V MLA+GAISW S Q +TA+ T +AEYV
Sbjct: 495 VDDPSSYSQAIQSSQSTKWIDAMVDELKSMDNNNVWDLVDLPNGCRPIGCKWVFKTKKDSTGKIERYKARLVAKGFSQKEGVNYKETFSLVSSKNSFRIVMALVAHFDFELHQMDVKKTFLNGDLIEDVYMLQPDGFQVSGNEHMVCKRKKSIYGLKQASRQWRSDL--------FEVVGYADADYAGYADDLKSTSGYVFMLARGAISWKSVKQTLTASSTVQAEYV 714
BLAST of mRNA_F-serratus_M_contig707.18275.1 vs. uniprot
Match: A0A1S3W0J5_VIGRR (uncharacterized protein LOC106780319 n=1 Tax=Vigna radiata var. radiata TaxID=3916 RepID=A0A1S3W0J5_VIGRR) HSP 1 Score: 116 bits (290), Expect = 3.160e-26 Identity = 78/233 (33.48%), Postives = 127/233 (54.51%), Query Frame = 1
Query: 7 LQATLDVS---EPRNRRQAMESHEWD-EWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATTAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNQGHLR-----THWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEY 678
L+ TL +S EPR+ ++A E +EW + +K E+ + +N + P K IG + +YK K DG I++YK RLVA+G+ Q EG+ + + +SP ++R++LAT AAK+ L D + AFL D++EE+Y+E P PG + Q LR GI + + ++A++DSD+ C +TRRS + + L +SW ++ Q + ++EAEY
Sbjct: 349 LKYTLAISADKEPRSYKEAKEKYEWVIDMQK----ELQALQDNGTWTLTQLPPGKNSIGCRWVYKIKYKADGSIKRYKARLVAKGYTQQEGIDFLDTFSPVAKLTTVRIILATAAAKNWHLHQLDIDNAFLHGDLNEEVYMEPP------PGLDIQEGQHMLRYIKSSPSQGIFFATDS-NIQIKAFSDSDWATCPNTRRSTTEFCIFLGSSLVSWKTKKQSNVSRSSTEAEY 570
BLAST of mRNA_F-serratus_M_contig707.18275.1 vs. uniprot
Match: A0A438GKL6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GKL6_VITVI) HSP 1 Score: 112 bits (279), Expect = 6.370e-26 Identity = 65/155 (41.94%), Postives = 90/155 (58.06%), Query Frame = 1
Query: 217 EKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATTAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNQGHLRTHWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYV 681
E+YK RLVA+GF Q EG+ Y E +SP S S R+++A A D EL D + AFL +IDE IY+ PE F+ ++++ I + L + Y+DSDF CLD+RRS SG + MLA GA+SW S Q + A+ T EAE++
Sbjct: 93 EQYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFES-----------KIQSNLSIGIVQEISHLEIVGYSDSDFAGCLDSRRSTSGYIFMLAGGAVSWKSVKQTLVASSTMEAEFI 236
BLAST of mRNA_F-serratus_M_contig707.18275.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR) HSP 1 Score: 115 bits (288), Expect = 6.380e-26 Identity = 62/149 (41.61%), Postives = 94/149 (63.09%), Query Frame = 1
Query: 25 VSEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATTAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNQ 471
+ +P++ +AM + + W+ A E+L V+ +YD+V RP+D+ V+G K +++ K G DG+IEKYK R+VA+GF QVEGV YT+ ++P ASIR LLA A D E+ D + AFL ++DEEI++ P FQ V +L +
Sbjct: 279 LDDPQSYEEAMSRPDAERWKAACAEELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFMACPPGFQGARNIVWQLRK 427
BLAST of mRNA_F-serratus_M_contig707.18275.1 vs. uniprot
Match: A0A2P6V0L8_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0L8_9CHLO) HSP 1 Score: 114 bits (284), Expect = 2.530e-25 Identity = 79/248 (31.85%), Postives = 119/248 (47.98%), Query Frame = 1
Query: 25 VSEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATTAAKDGELRHFDAEQAFLKADIDEEIY---------------IEIPEEFQEFPGAVGRLNQGHLRTHWG-----ITY--GGQGCGLC-------MEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYV 681
+EP ++A+ + W+ A + EM ++ N + P I K +YK K +G IE+YK RLV QGF Q EG+ Y E ++P +++R +L+T AA+D +L D + AFL IDEE+Y I + + GA+ R HW + Y G G+ ++ + D+D +DTRRS +G + GAISW SR+Q AA T+EAEY+
Sbjct: 1737 ANEPTTMKEALSGPDAAAWQLAMDDEMASLIANDTWTLCEPPHGTKPIPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAAAQDLDLHQLDIKTAFLNGTIDEEVYTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGPPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYI 1984
BLAST of mRNA_F-serratus_M_contig707.18275.1 vs. uniprot
Match: A0A2N9G102_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G102_FAGSY) HSP 1 Score: 112 bits (281), Expect = 6.150e-25 Identity = 79/226 (34.96%), Postives = 110/226 (48.67%), Query Frame = 1
Query: 49 QAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATTAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNQGHLRTHWG----ITYGGQGC-----------GLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYV 681
QAM E + W A + EM M N V+D V P IG K ++K K G IE+YK RLVA+GF Q EG++YTE +SP S+R++LA A D EL + I+ + + + G +GR HW + QG L + Y+DSDF C+D+R+S SG + ++A G +SW S Q +TA T EAE+V
Sbjct: 1170 QAMSCKESELWYNAMKEEMNSMKSNGVWDLVELPNGVKAIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGINYTETFSPISKKDSLRIILALVAHFDLELIWVRHLMSLALRSIETDFKVCTRPDIAFAVGMLGRYQSDPGLDHWRAAKKVMRYLQGTKDYMLMYRRTDNLEVIGYSDSDFAGCIDSRKSTSGYIFLMASGVVSWRSAKQTLTATSTMEAEFV 1395
BLAST of mRNA_F-serratus_M_contig707.18275.1 vs. uniprot
Match: A0A438G4Y0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438G4Y0_VITVI) HSP 1 Score: 108 bits (269), Expect = 1.080e-24 Identity = 78/225 (34.67%), Postives = 112/225 (49.78%), Query Frame = 1
Query: 79 WRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATTAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEF------------QEFPGAVGRLNQGHLRT---------------HWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEA 672
W A + EM M N V+D V PKD VIG K ++K K IE+YK RLVA+GF Q EG+ Y + +S + S +++A A D L D + AFL D+++++Y++ PE F ++F + + + RT + +TY + L + Y+DSDF CLD+R+S S V +LA GAISW S Q A T EA
Sbjct: 71 WYNAMKDEMNSMANNQVWDFVELPKDAKVIGCKWVFKTKRDSSSNIERYKARLVAKGFNQQEGIDYHDIFSLVSNKDSFMIIMALVAHFDMVLHQMDVKTAFLNGDLEDKVYMKQPEGFIANGNDHIVCKLKKFIYGLKQESHQWSRTLESCKESHEILKGTRDYKLTYR-RSDHLDVVGYSDSDFFGCLDSRKSTSRYVFLLAGGAISWRSAKQTSVATSTIEA 294 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig707.18275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig707.18275.1 >prot_F-serratus_M_contig707.18275.1 ID=prot_F-serratus_M_contig707.18275.1|Name=mRNA_F-serratus_M_contig707.18275.1|organism=Fucus serratus male|type=polypeptide|length=227bp MALQATLDVSEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPback to top mRNA from alignment at F-serratus_M_contig707:215890..217165- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig707.18275.1 ID=mRNA_F-serratus_M_contig707.18275.1|Name=mRNA_F-serratus_M_contig707.18275.1|organism=Fucus serratus male|type=mRNA|length=1276bp|location=Sequence derived from alignment at F-serratus_M_contig707:215890..217165- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig707:215890..217165- >mRNA_F-serratus_M_contig707.18275.1 ID=mRNA_F-serratus_M_contig707.18275.1|Name=mRNA_F-serratus_M_contig707.18275.1|organism=Fucus serratus male|type=CDS|length=1362bp|location=Sequence derived from alignment at F-serratus_M_contig707:215890..217165- (Fucus serratus male)back to top |