mRNA_F-serratus_M_contig7050.18264.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7050.18264.1
Unique NamemRNA_F-serratus_M_contig7050.18264.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig7050.18264.1 vs. uniprot
Match: A0A835Z5G8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G8_9STRA)

HSP 1 Score: 157 bits (397), Expect = 4.040e-45
Identity = 77/136 (56.62%), Postives = 98/136 (72.06%), Query Frame = 1
Query:    1 QDLAFTRMFATVKPRPMPIMTYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLACPASVQLLSTPLNLLGMDLYNNPNSAMMAHAKFITREYNSAMILRVSRTGPAFGIGGVGNTAFRKHFASLF 408
            +D AFTRMF +  P  +P+ TY LFT+RD  TV ASFN+P P S++LQ + GMS+  AD TAQ+ACPA+VQ LSTPL+L+G+DLYNNP S       F+  +Y S++  R+ R GPAFGIGGVGNTAFRK   + F
Sbjct:  143 KDRAFTRMFGSSAPMALPLSTYALFTIRDAGTVGASFNLPGPVSEWLQAQ-GMSKARADFTAQMACPAAVQFLSTPLHLIGLDLYNNPKSTARDRWTFMCSKYTSSVAARIGRIGPAFGIGGVGNTAFRKGLRARF 277          
BLAST of mRNA_F-serratus_M_contig7050.18264.1 vs. uniprot
Match: A0A8H7S7R9_9FUNG (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S7R9_9FUNG)

HSP 1 Score: 145 bits (365), Expect = 1.430e-40
Identity = 69/129 (53.49%), Postives = 88/129 (68.22%), Query Frame = 1
Query:    1 QDLAFTRMFATVKPRPMPIMTYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLACPASVQLLSTPLNLLGMDLYNNPNSAMMAHAKFITREYNSAMILRVSRTGPAFGIGGVGNTAFR 387
            +D  FTRMF     R +P  TY+ F  RD MTVAASFN P+  + +LQE + M ++N+ VTAQLACPA +Q +STP++LLG+DLYN PN+        I +EY  + + RV R GPAFGIGGVGNT FR
Sbjct:  124 KDRTFTRMFGVTTTRALPKFTYLCFAARDSMTVAASFNAPTYFASWLQENYSMDQRNSKVTAQLACPALIQFISTPIHLLGLDLYNRPNATSNQRVGLIRKEYFKSALARVGRIGPAFGIGGVGNTYFR 252          
BLAST of mRNA_F-serratus_M_contig7050.18264.1 vs. uniprot
Match: A0A261XX22_9FUNG (Uncharacterized protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XX22_9FUNG)

HSP 1 Score: 137 bits (346), Expect = 5.060e-38
Identity = 69/129 (53.49%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    1 QDLAFTRMFATVKPRPMPIMTYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLACPASVQLLSTPLNLLGMDLYNNPNSAMMAHAKFITREYNSAMILRVSRTGPAFGIGGVGNTAFR 387
            +D AFTRMF TV     P+ +Y LF  RD +TVAASFN P   S YLQ+    ++  AD+ AQL CPA VQ +STPL+LLG+DLYN  N  +   A  I REY  + + R++R GPAFGIGGVGNT  R
Sbjct:   91 KDRAFTRMFGTVASHSFPLPSYALFAARDSLTVAASFNAPQLVSHYLQKHNISTKHTADIVAQLGCPALVQFVSTPLHLLGLDLYNRSNMKLSDRAGLIRREYLKSTLARIARIGPAFGIGGVGNTLLR 219          
BLAST of mRNA_F-serratus_M_contig7050.18264.1 vs. uniprot
Match: A0A3M6VQY3_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQY3_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.650e-37
Identity = 67/132 (50.76%), Postives = 85/132 (64.39%), Query Frame = 1
Query:    1 QDLAFTRMFATVKPRPMPIMTYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLACPASVQLLSTPLNLLGMDLYNNPNSAMMAHAKFITREYNSAMILRVSRTGPAFGIGGVGNTAFRKHF 396
            +D AF RMF  + P   P+ +  LF VRD MT AASFN P   +K +++   M + NA   AQL CPA+VQ +STPL+LLG+DLYNN    M  HA  + REY  +++ RV R GPAFG+GGVGN  FR  F
Sbjct:  127 KDRAFARMFGVIAPAAFPLASIGLFAVRDSMTCAASFNAPKVLAKKIEDNKLMDKSNAGTFAQLICPAAVQFISTPLHLLGLDLYNNKGHTMTQHASLVRREYVKSVLARVGRIGPAFGVGGVGNAYFRNIF 258          
BLAST of mRNA_F-serratus_M_contig7050.18264.1 vs. uniprot
Match: A0A8H7U8D9_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7U8D9_MORIS)

HSP 1 Score: 137 bits (344), Expect = 3.450e-37
Identity = 69/132 (52.27%), Postives = 90/132 (68.18%), Query Frame = 1
Query:    1 QDLAFTRMFATVKPRPMPIMTYVLFTVRDGMTVAASFNMPSPASKYLQ-ERFGMSEKNADVTAQLACPASVQLLSTPLNLLGMDLYNNPNSAMMAHAKFITREYNSAMILRVSRTGPAFGIGGVGNTAFRKH 393
            +D AFTRMF TV  +P+P+ +Y+LF  RD +T+ +SFN P   SKY+Q E    S K +D  AQLACPA +Q +STPL+LLG+DLYNN NS+       I REY  +++ RV+R  PAFGIGGVGN   R +
Sbjct:  140 KDRAFTRMFGTVASKPLPLFSYLLFASRDSLTILSSFNAPPIVSKYIQTEGILNSSKMSDTIAQLACPAVMQFISTPLHLLGLDLYNNSNSSSGQRLSLIRREYVKSVLARVARIAPAFGIGGVGNNYVRSY 271          
BLAST of mRNA_F-serratus_M_contig7050.18264.1 vs. uniprot
Match: G4ZUB7_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZUB7_PHYSP)

HSP 1 Score: 135 bits (340), Expect = 9.490e-37
Identity = 67/129 (51.94%), Postives = 83/129 (64.34%), Query Frame = 1
Query:    1 QDLAFTRMFATVKPRPMPIMTYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLACPASVQLLSTPLNLLGMDLYNNPNSAMMAHAKFITREYNSAMILRVSRTGPAFGIGGVGNTAFR 387
            +D AF RMF  + P   P+ +  LF VRD MT  ASFN P   +K +++   M + NA   AQL CPA+VQ LSTPL+L+G+DLYNN   AM     F+ REY  ++  RV R GPAFGIGGVGNT FR
Sbjct:  128 KDRAFARMFGVIAPAAFPLTSIGLFAVRDSMTCGASFNAPKVLAKKIEDNGLMEKGNASTFAQLVCPAAVQFLSTPLHLMGLDLYNNKGHAMAQRVSFVQREYVKSVFARVGRIGPAFGIGGVGNTYFR 256          
BLAST of mRNA_F-serratus_M_contig7050.18264.1 vs. uniprot
Match: H3GH37_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GH37_PHYRM)

HSP 1 Score: 135 bits (339), Expect = 1.280e-36
Identity = 66/129 (51.16%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    1 QDLAFTRMFATVKPRPMPIMTYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLACPASVQLLSTPLNLLGMDLYNNPNSAMMAHAKFITREYNSAMILRVSRTGPAFGIGGVGNTAFR 387
            +D AF RMF  + P   P+ +  LF VRD MT  ASFN P   +K ++++  M +  A   AQL CPA+VQLLSTPL+LLG+DLYNN   A+     F+ REY  +++ R+ R GPAFGIGGVGNT FR
Sbjct:  126 KDRAFARMFGVIAPAAFPLTSIGLFAVRDSMTCGASFNAPKVLAKKIEDKGLMEKSGAATFAQLVCPAAVQLLSTPLHLLGLDLYNNQGHAVAKRVSFVKREYVKSVLARIGRIGPAFGIGGVGNTYFR 254          
BLAST of mRNA_F-serratus_M_contig7050.18264.1 vs. uniprot
Match: A0A662XCZ4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XCZ4_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.280e-36
Identity = 67/136 (49.26%), Postives = 85/136 (62.50%), Query Frame = 1
Query:    1 QDLAFTRMFATVKPRPMPIMTYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLACPASVQLLSTPLNLLGMDLYNNPNSAMMAHAKFITREYNSAMILRVSRTGPAFGIGGVGNTAFRKHFASLF 408
            +D AF RMF  + P   P+ +  LF VRD +TVAASFN P   +K L++   M    A   AQL CPA+VQ +STPL+LLG+DLYNN   +    A F+ REY  ++  R+ R GPAFGIGGVGNT FR    + F
Sbjct:  126 KDRAFARMFGVIAPAAFPLASIGLFAVRDSLTVAASFNAPKFLAKKLEDDAKMQPSRAGTIAQLVCPAAVQFISTPLHLLGLDLYNNKGLSAAKRASFVQREYLKSVFARIGRIGPAFGIGGVGNTYFRDQLRTTF 261          
BLAST of mRNA_F-serratus_M_contig7050.18264.1 vs. uniprot
Match: A0A068RU79_9FUNG (Uncharacterized protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RU79_9FUNG)

HSP 1 Score: 135 bits (339), Expect = 1.520e-36
Identity = 67/131 (51.15%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    1 QDLAFTRMFATVKPRPMPIMTYVLFTVRDGMTVAASFNMPSPASKYL--QERFGMSEKNADVTAQLACPASVQLLSTPLNLLGMDLYNNPNSAMMAHAKFITREYNSAMILRVSRTGPAFGIGGVGNTAFR 387
            +D AF RMF       +P+M+Y+LF  RD +T+AASF  P   +++L  +++   S KNA VTAQLACPA++Q +STPL+LLG+DLYN  N +   H   I  EY  + + RV+R GPAFGIGGVGNT FR
Sbjct:  132 KDRAFARMFGVTASHSLPLMSYLLFAARDSLTIAASFTAPPVVTRWLFEEKQVFSSHKNAAVTAQLACPAAIQFISTPLHLLGLDLYNRSNVSPAQHFSLIRAEYLKSTLARVARIGPAFGIGGVGNTYFR 262          
BLAST of mRNA_F-serratus_M_contig7050.18264.1 vs. uniprot
Match: A0A433PI02_9FUNG (Uncharacterized protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PI02_9FUNG)

HSP 1 Score: 134 bits (338), Expect = 6.110e-36
Identity = 70/131 (53.44%), Postives = 88/131 (67.18%), Query Frame = 1
Query:    1 QDLAFTRMFATVKPRPMPIMTYVLFTVRDGMTVAASFNMPSPASKYLQERFGM--SEKNADVTAQLACPASVQLLSTPLNLLGMDLYNNPNSAMMAHAKFITREYNSAMILRVSRTGPAFGIGGVGNTAFR 387
            +D AFTRMF     RP+P+ TY LF  RD +TVAASFN P   S  L  R+G    +++ADV AQLACPA+VQ LSTP++LLG+DLYN P  +       + REY  + I R++R GPAFGIGG+GN  FR
Sbjct:  151 KDRAFTRMFGLTAARPLPLATYGLFASRDALTVAASFNAPEVVSATLL-RYGAVWDKRSADVVAQLACPAAVQFLSTPVHLLGLDLYNRPGVSAGQRITLVGREYFKSAIARIARIGPAFGIGGIGNAGFR 280          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7050.18264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5G8_9STRA4.040e-4556.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8H7S7R9_9FUNG1.430e-4053.49Uncharacterized protein n=1 Tax=Mucor circinatus T... [more]
A0A261XX22_9FUNG5.060e-3853.49Uncharacterized protein n=1 Tax=Bifiguratus adelai... [more]
A0A3M6VQY3_9STRA1.650e-3750.76Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A8H7U8D9_MORIS3.450e-3752.27Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
G4ZUB7_PHYSP9.490e-3751.94Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
H3GH37_PHYRM1.280e-3651.16Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A662XCZ4_9STRA1.280e-3649.26Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A068RU79_9FUNG1.520e-3651.15Uncharacterized protein n=2 Tax=Lichtheimia TaxID=... [more]
A0A433PI02_9FUNG6.110e-3653.44Uncharacterized protein n=1 Tax=Endogone sp. FLAS-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7050contigF-serratus_M_contig7050:22197..23001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue1.6e-27
Seed eggNOG ortholog115417.EPrPW00000016695
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pc13g06010 protein. Source PGD
EggNOG OGs1MEHD@121069,28PN9@1,2QWAD@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons2
Model size417
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7050.18264.1prot_F-serratus_M_contig7050.18264.1Fucus serratus malepolypeptideF-serratus_M_contig7050 22218..23001 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932171.385724-UTR-F-serratus_M_contig7050:22196..222171622932171.385724-UTR-F-serratus_M_contig7050:22196..22217Fucus serratus maleUTRF-serratus_M_contig7050 22197..22217 +
1690964181.8953931-UTR-F-serratus_M_contig7050:22196..222171690964181.8953931-UTR-F-serratus_M_contig7050:22196..22217Fucus serratus maleUTRF-serratus_M_contig7050 22197..22217 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932171.4033167-CDS-F-serratus_M_contig7050:22217..223851622932171.4033167-CDS-F-serratus_M_contig7050:22217..22385Fucus serratus maleCDSF-serratus_M_contig7050 22218..22385 +
1690964181.9090304-CDS-F-serratus_M_contig7050:22217..223851690964181.9090304-CDS-F-serratus_M_contig7050:22217..22385Fucus serratus maleCDSF-serratus_M_contig7050 22218..22385 +
1622932171.4164648-CDS-F-serratus_M_contig7050:22773..230011622932171.4164648-CDS-F-serratus_M_contig7050:22773..23001Fucus serratus maleCDSF-serratus_M_contig7050 22774..23001 +
1690964181.9227893-CDS-F-serratus_M_contig7050:22773..230011690964181.9227893-CDS-F-serratus_M_contig7050:22773..23001Fucus serratus maleCDSF-serratus_M_contig7050 22774..23001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7050.18264.1

>prot_F-serratus_M_contig7050.18264.1 ID=prot_F-serratus_M_contig7050.18264.1|Name=mRNA_F-serratus_M_contig7050.18264.1|organism=Fucus serratus male|type=polypeptide|length=132bp
MFATVKPRPMPIMTYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKN
ADVTAQLACPASVQLLSTPLNLLGMDLYNNPNSAMMAHAKFITREYNSAM
ILRVSRTGPAFGIGGVGNTAFRKHFASLFTS*
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mRNA from alignment at F-serratus_M_contig7050:22197..23001+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7050.18264.1 ID=mRNA_F-serratus_M_contig7050.18264.1|Name=mRNA_F-serratus_M_contig7050.18264.1|organism=Fucus serratus male|type=mRNA|length=805bp|location=Sequence derived from alignment at F-serratus_M_contig7050:22197..23001+ (Fucus serratus male)
CAGGACCTCGCGTTCACGCGTATGTTTGCAACAGTCAAGCCGAGGCCGAT GCCAATCATGACCTATGTCCTGTTCACGGTCCGTGACGGTATGACCGTTG CAGCGTCGTTCAACATGCCCAGTCCGGCGTCCAAGTACCTGCAGGAACGG TTTGGAATGTCGGAGAAGAACGCTGACGTCACCGCCCAGGTATGTACGGC TACGGTATTTAAGGGCGTCCAAACATGTTGACTGAGTTTGACGGGCTAGC TCTGTCTGATTGGTAGATACCGGGCAGCGGAGACAAACGAAGTGCTTTGC AGAAGGTACGATGATGATAACACTAGCCCTGACGTCTTTATTTGTAGACA CGAGCACGGTCCCAGTTGTTAACAGGCTTCCCACCTTCACAACATCCCTC TCAAGTGACACCAACTCTGCATTACACTATGATTCACCCCAAGAACGTTC TTTCTGCTAGGGTGGCCTGTTTGACGGTAATCGTTCCGCGTGATGTTACA CTATATCTTCGCGACATCTCTGTTTGACGATAAGCGTACTCGACCCCCCT TTCGGACGTGTGCCCTCCAATATGCAGCTCGCATGCCCGGCCAGCGTCCA GCTTCTTTCGACCCCCCTGAATCTGTTGGGGATGGACCTGTACAACAACC CGAACAGCGCCATGATGGCCCACGCGAAATTCATCACCAGGGAGTACAAC TCGGCCATGATTTTGCGAGTCAGTCGCACCGGCCCCGCTTTCGGGATCGG AGGTGTGGGAAACACGGCGTTCCGAAAACACTTCGCCTCCTTGTTCACTT CTTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7050:22197..23001+

>mRNA_F-serratus_M_contig7050.18264.1 ID=mRNA_F-serratus_M_contig7050.18264.1|Name=mRNA_F-serratus_M_contig7050.18264.1|organism=Fucus serratus male|type=CDS|length=792bp|location=Sequence derived from alignment at F-serratus_M_contig7050:22197..23001+ (Fucus serratus male)
ATGTTTGCAACAGTCAAGCCGAGGCCGATGCCAATCATGACCTATGTCCT
GTTCACGGTCCGTGACGGTATGACCGTTGCAGCGTCGTTCAACATGCCCA
GTCCGGCGTCCAAGTACCTGCAGGAACGGTTTGGAATGTCGGAGAAGAAC
GCTGACGTCACCGCCCAGATGTTTGCAACAGTCAAGCCGAGGCCGATGCC
AATCATGACCTATGTCCTGTTCACGGTCCGTGACGGTATGACCGTTGCAG
CGTCGTTCAACATGCCCAGTCCGGCGTCCAAGTACCTGCAGGAACGGTTT
GGAATGTCGGAGAAGAACGCTGACGTCACCGCCCAGCTCGCATGCCCGGC
CAGCGTCCAGCTTCTTTCGACCCCCCTGAATCTGTTGGGGATGGACCTGT
ACAACAACCCGAACAGCGCCATGATGGCCCACGCGAAATTCATCACCAGG
GAGTACAACTCGGCCATGATTTTGCGAGTCAGTCGCACCGGCCCCGCTTT
CGGGATCGGAGGTGTGGGAAACACGGCGTTCCGAAAACACTTCGCCTCCT
TGTTCACTTCTTAGCTCGCATGCCCGGCCAGCGTCCAGCTTCTTTCGACC
CCCCTGAATCTGTTGGGGATGGACCTGTACAACAACCCGAACAGCGCCAT
GATGGCCCACGCGAAATTCATCACCAGGGAGTACAACTCGGCCATGATTT
TGCGAGTCAGTCGCACCGGCCCCGCTTTCGGGATCGGAGGTGTGGGAAAC
ACGGCGTTCCGAAAACACTTCGCCTCCTTGTTCACTTCTTAG
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