mRNA_F-serratus_M_contig7050.18263.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7050.18263.1
Unique NamemRNA_F-serratus_M_contig7050.18263.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7050.18263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7050contigF-serratus_M_contig7050:13835..14336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size158
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932171.3277895-CDS-F-serratus_M_contig7050:13835..139121622932171.3277895-CDS-F-serratus_M_contig7050:13835..13912Fucus serratus maleCDSF-serratus_M_contig7050 13836..13912 -
1690964181.8666606-CDS-F-serratus_M_contig7050:13835..139121690964181.8666606-CDS-F-serratus_M_contig7050:13835..13912Fucus serratus maleCDSF-serratus_M_contig7050 13836..13912 -
1622932171.3442068-CDS-F-serratus_M_contig7050:14257..143361622932171.3442068-CDS-F-serratus_M_contig7050:14257..14336Fucus serratus maleCDSF-serratus_M_contig7050 14258..14336 -
1690964181.881439-CDS-F-serratus_M_contig7050:14257..143361690964181.881439-CDS-F-serratus_M_contig7050:14257..14336Fucus serratus maleCDSF-serratus_M_contig7050 14258..14336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7050.18263.1prot_F-serratus_M_contig7050.18263.1Fucus serratus malepolypeptideF-serratus_M_contig7050 13836..14336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7050.18263.1

>prot_F-serratus_M_contig7050.18263.1 ID=prot_F-serratus_M_contig7050.18263.1|Name=mRNA_F-serratus_M_contig7050.18263.1|organism=Fucus serratus male|type=polypeptide|length=52bp
YGRVGEGRRNCVRPAAEEERSGRGGQDHVPDWQPRKLLGMVEARSVNVKK
TT
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mRNA from alignment at F-serratus_M_contig7050:13835..14336-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7050.18263.1 ID=mRNA_F-serratus_M_contig7050.18263.1|Name=mRNA_F-serratus_M_contig7050.18263.1|organism=Fucus serratus male|type=mRNA|length=502bp|location=Sequence derived from alignment at F-serratus_M_contig7050:13835..14336- (Fucus serratus male)
TATGGCCGCGTGGGTGAGGGAAGAAGAAATTGCGTCCGACCAGCGGCAGA
AGAAGAGAGAAGCGGAAGAGGCGGACAAGGTTGAGGTTGCACCTGGGGTG
ACTGTAGCAAGCTTGAGACGTTTTCGAACCGCGTTGATTGGACCAACCCA
AGGACTCCCTAAGCGACGCCGATTGTGCCGTTAGTGAAAACTGAAACCCC
AAGAGTACGGAATGCGGTAGATGCTACGCGTTTGGGTGCATGGTTGCGAT
CCGGGAGGGTATAGGATGACTCCCGGCTGACTCTTTGCCAAACTCTCTCT
CTCGAATGTCCCTCTTCTATTTTTTTTTTCTGGCATGTGTATTTTGTTAT
CCTTGTTCCTTTCTCTTTGTCGTTTTTGTGTGTGTGTTTGATAGATGTTC
CTCTGACCTCTTTCTGTCCAGCAGACCACGTACCGGATTGGCAACCACGT
AAATTACTGGGTATGGTTGAGGCCCGATCGGTTAATGTGAAGAAAACAAC
AA
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Coding sequence (CDS) from alignment at F-serratus_M_contig7050:13835..14336-

>mRNA_F-serratus_M_contig7050.18263.1 ID=mRNA_F-serratus_M_contig7050.18263.1|Name=mRNA_F-serratus_M_contig7050.18263.1|organism=Fucus serratus male|type=CDS|length=312bp|location=Sequence derived from alignment at F-serratus_M_contig7050:13835..14336- (Fucus serratus male)
TATGGCCGCGTGGGTGAGGGAAGAAGAAATTGCGTCCGACCAGCGGCAGA
AGAAGAGAGAAGCGGAAGAGGCGGACAAGTATGGCCGCGTGGGTGAGGGA
AGAAGAAATTGCGTCCGACCAGCGGCAGAAGAAGAGAGAAGCGGAAGAGG
CGGACAAGACCACGTACCGGATTGGCAACCACGTAAATTACTGGGTATGG
TTGAGGCCCGATCGGTTAATGTGAAGAAAACAACAACCACGTACCGGATT
GGCAACCACGTAAATTACTGGGTATGGTTGAGGCCCGATCGGTTAATGTG
AAGAAAACAACA
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