mRNA_F-serratus_M_contig705.18258.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig705.18258.1 vs. uniprot
Match: D8LEC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC1_ECTSI) HSP 1 Score: 313 bits (801), Expect = 5.470e-99 Identity = 160/258 (62.02%), Postives = 201/258 (77.91%), Query Frame = 3
Query: 12 MQENATTCTSCVFRLRFGFRRALFVQLYLADEALVAFAHE-LGFKGDADVARMMRVFLSVDAKETHKLDIDAFFQYFDIESTEYNNRAFQLLAAFEDKEDKPRRNGSSNGRAQSLT--FDQFFVSMYNYGTLTHEALVRFAFDIMACGNEFCNKQDIMELASLLHSDPARIKETTHSLMTIMDPHDQNKISFATFRKEERRLQSMLFPAFKLQKILRAKVLGNSYWRRATEKRRKASLLDADLRQEYIRFKKEWEAET 776
M E+A +C C+FR RFGFRRAL+ QL+L +E LV LG KGD DVAR+MRVFL VD + THKLDI+ FF+YF IE +EYN RAF+LLA +++ED+ R GSS+ + SL+ FDQFFVSMYNYGTL HEALVRFAFD+MA G EFCN+QD++ L SLLHS+ +R++ TT +LM IMDPH+++K+SF TFRKEERRL SMLFPAFKLQK LRAKVLG +WR+AT++RRKA ++ ADL +EY + + A T
Sbjct: 1 MAEDAASCRGCIFRWRFGFRRALYEQLFLKNEPLVVLVRNMLGIKGDGDVARVMRVFLDVDLRGTHKLDIETFFEYFGIEFSEYNKRAFRLLAFGDEQEDRTGRRGSSSSKRSSLSLKFDQFFVSMYNYGTLLHEALVRFAFDVMASGKEFCNRQDVIGLVSLLHSEKSRVRNTTDTLMGIMDPHNRDKVSFETFRKEERRLGSMLFPAFKLQKTLRAKVLGQRFWRKATKRRRKARMVGADLCREYTKVGRRSRAST 258
BLAST of mRNA_F-serratus_M_contig705.18258.1 vs. uniprot
Match: A0A835ZE72_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE72_9STRA) HSP 1 Score: 122 bits (305), Expect = 1.640e-25 Identity = 77/218 (35.32%), Postives = 117/218 (53.67%), Query Frame = 3
Query: 54 LRFGFRRALFVQLYLADEALVAFAHELGFKGDADVARMMRVFLSVDAKETHKLDIDAFFQYFDIESTEYNNRAFQLLAAFEDKEDKPRRNGSSNGRAQ----------------SLTFDQFFVSMYNYGTLTHEALVRFAFDIMACGNEFCNKQDIMELASLLHSDPARIKETTHSLMTIMDPHDQNKISFATFRKEERRLQSMLFPAFKLQKILRAK 659
L FG R F + L D LV F ++ K D R++ + VD+ + K+DI FF YF+IE + YN RAF+LLA ++GS ++F +F VSMY+Y T +H LVRF+F I++ G + D+ +LL ++PAR +ETT S+M ++D ++++ F E++L SML+PAF+LQK+LR K
Sbjct: 14 LWFGVSRTDFKRTVLEDRILVEFLAKIHLK-QVDALRLLAAYNKVDSDRSGKIDIGEFFDYFNIEHSAYNVRAFKLLAF-------STQDGSGXXXXXXXXXXXXXXXXXXXXAEMSFAEFLVSMYSYCTQSHGTLVRFSFRIISAGKRYITLGDVGAFVALLITNPARHQETTASMMQVLDSEKTGRVAWEQFLANEKKLGSMLYPAFRLQKMLRNK 223
BLAST of mRNA_F-serratus_M_contig705.18258.1 vs. uniprot
Match: F0YHS1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHS1_AURAN) HSP 1 Score: 96.7 bits (239), Expect = 4.900e-17 Identity = 59/218 (27.06%), Postives = 109/218 (50.00%), Query Frame = 3
Query: 153 DVARMMRVFLSVDAKETHKLDIDAFFQYFDIESTEYNNRAFQLL-------------------AAFEDKEDKPRR---NGSSNGRAQSLTFDQFFVSMYNYGTLTHEALVRFAFDIMACGNE-FCNKQDIMELASLLHSDPARIKETTHSLMTIMDPHDQNK----------ISFATFRKEERRLQSMLFPAFKLQKILRAKVLGNSYWRRATEKRRK 707
D AR +R+F +D+ + +DI+ FF Y + + Y +AF ++ A + + K RR G + + L + +FFV+++N+ TLT+E +VRF FD++ + +K ++ E+ L+ + ++ LM ++D + + + F F + +L S++FPAF+L++ILR K +GN +WRR + R K
Sbjct: 680 DAARFLRLFEKIDSNHSGTIDIEEFFDYLRTDISGYTRKAFAMMEIKTEEMGQHGEIDAAKARALAKKERQKARRVKKRGGTYVKNIELHYAEFFVALFNFLTLTNERIVRFTFDLIDEDKSGYLSKDEVFEMVRLMATTEEEVQAKVQKLMNVLDANGDGRRGKSARRDGDVEFEEFYRVHCKLSSLMFPAFRLRRILRIKCMGNRFWRRCEKNREK 897
BLAST of mRNA_F-serratus_M_contig705.18258.1 vs. uniprot
Match: A0A7S1G3P1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G3P1_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 2.020e-14 Identity = 48/185 (25.95%), Postives = 94/185 (50.81%), Query Frame = 3
Query: 156 VARMMRVFLSVDAKETHKLDIDAFFQYFDIESTEYNNRAFQLLAAFEDKEDKPRRNGSSNGRAQSLTFDQFFVSMYNYGTLTHEALVRFAFDIMACGNEFCNK-QDIMELASLLHSDPARIKETTHSLMTIMDPHDQNKISFATFRKEERRLQSMLFPAFKLQKILRAKVLGNSYWRRATEKRRK 707
+ R +FL +D E+H++D+D F+++FDIE + +++R F ++ +G + + F +F V ++NY + AL++FA ++ EL ++ D ++ +D ++S+A FR R+ ++LFPAF++Q+ +R +V G ++W + EKR K
Sbjct: 39 IDRYYELFLKIDRDESHEIDLDEFYRFFDIERSPFSDRIFSIM--------------DEDGSGE-IDFREFVVCLWNYLSFDTSALIKFAXXXXXXXXXXXXXVTEVRELVMEVYGDAFEASYRVQRILDRIDADGDGEVSYAEFRDFNRKYPAILFPAFRMQQEMRRRVFGEAFWTKELEKRAK 208
BLAST of mRNA_F-serratus_M_contig705.18258.1 vs. uniprot
Match: A0A812KJA5_9DINO (Calmodulin n=4 Tax=Sar TaxID=2698737 RepID=A0A812KJA5_9DINO) HSP 1 Score: 77.0 bits (188), Expect = 1.270e-11 Identity = 52/177 (29.38%), Postives = 92/177 (51.98%), Query Frame = 3
Query: 186 VDAKETHKLDIDAFFQYFDIESTEYNNRAFQLLAA--FEDKEDKPRRNGSSNGRAQSLTFDQFFVSMYNYGTLTHEALVRFAFDIMACGNEFCNKQDIMELASLLHSDPARIKETTHSLMTIMDPHDQN---KISFATFRKEERRLQSMLFPAFKLQKILRAKVLGNSYWRRATEKR 701
+D T +D+D F+++F +E + + +R F ++ + R N ++G ++F +F V ++NY +L ++L+RF FD+ + DI E+ LL ET L +M+ D N ++SF F+ SMLFPAF++Q+++R KV G ++W A + R
Sbjct: 1 MDKDGTGVVDLDEFYRFFKLERSPFADRVFSIMGEPFVASRRLTNRENDDASGE---ISFREFVVCLWNYLSLDIKSLMRFCFDLF--DQDLSGYLDIAEMHELLREVYGDSFETNGRLKHLMEELDANGDGRLSFEEFKGMNLAYPSMLFPAFRIQQLMRDKVFGAAFWNVALKNR 172
BLAST of mRNA_F-serratus_M_contig705.18258.1 vs. uniprot
Match: A0A7S2MSE8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MSE8_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 7.090e-8 Identity = 49/172 (28.49%), Postives = 84/172 (48.84%), Query Frame = 3
Query: 174 VFLSVDAKETHKLDIDAFFQYFDIESTEYNNRAFQLLAAFEDKEDKPRRNGSSNGRAQSLTFDQFFVSMYNYGTLTHEALVRFAFDIM-ACGNEFCNKQDIMELASLLHSDPARI-KETTHSLMTIMD-PHDQNKISFATFRKEERRLQSMLFPAFKLQKILRAKVLGNSYW 680
+F +D + ++ F + +I +++ ++ F + +GS L F +F V+ +NY +L+ +AL +FAFD+ G+ +K ++ +L + K T H I D ISF FR+ R Q++LFPAFKLQ +LR +V+G +YW
Sbjct: 10 IFQKMDLDHSSTIETSEFLTFLNIGESQFAHKVFSCMDF----------DGSG-----FLNFFEFAVATWNYCSLSKDALHQFAFDLYDRDGSGDISKAEMFDLCKEVFGTAWETSKSTKHLAKNIFSYSSDSECISFEDFREVARNHQTLLFPAFKLQSLLRKRVIGETYW 166 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig705.18258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig705.18258.1 >prot_F-serratus_M_contig705.18258.1 ID=prot_F-serratus_M_contig705.18258.1|Name=mRNA_F-serratus_M_contig705.18258.1|organism=Fucus serratus male|type=polypeptide|length=465bp MMQENATTCTSCVFRLRFGFRRALFVQLYLADEALVAFAHELGFKGDADVback to top mRNA from alignment at F-serratus_M_contig705:246415..271253+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig705.18258.1 ID=mRNA_F-serratus_M_contig705.18258.1|Name=mRNA_F-serratus_M_contig705.18258.1|organism=Fucus serratus male|type=mRNA|length=24839bp|location=Sequence derived from alignment at F-serratus_M_contig705:246415..271253+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig705:246415..271253+ >mRNA_F-serratus_M_contig705.18258.1 ID=mRNA_F-serratus_M_contig705.18258.1|Name=mRNA_F-serratus_M_contig705.18258.1|organism=Fucus serratus male|type=CDS|length=2790bp|location=Sequence derived from alignment at F-serratus_M_contig705:246415..271253+ (Fucus serratus male)back to top |