mRNA_F-serratus_M_contig704.18241.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig704.18241.1
Unique NamemRNA_F-serratus_M_contig704.18241.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig704.18241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig704contigF-serratus_M_contig704:219641..220538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932162.4792967-CDS-F-serratus_M_contig704:219640..2199041622932162.4792967-CDS-F-serratus_M_contig704:219640..219904Fucus serratus maleCDSF-serratus_M_contig704 219641..219904 +
1690964177.6244917-CDS-F-serratus_M_contig704:219640..2199041690964177.6244917-CDS-F-serratus_M_contig704:219640..219904Fucus serratus maleCDSF-serratus_M_contig704 219641..219904 +
1622932162.5276997-CDS-F-serratus_M_contig704:220304..2205381622932162.5276997-CDS-F-serratus_M_contig704:220304..220538Fucus serratus maleCDSF-serratus_M_contig704 220305..220538 +
1690964177.6350405-CDS-F-serratus_M_contig704:220304..2205381690964177.6350405-CDS-F-serratus_M_contig704:220304..220538Fucus serratus maleCDSF-serratus_M_contig704 220305..220538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig704.18241.1prot_F-serratus_M_contig704.18241.1Fucus serratus malepolypeptideF-serratus_M_contig704 219641..220538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig704.18241.1

>prot_F-serratus_M_contig704.18241.1 ID=prot_F-serratus_M_contig704.18241.1|Name=mRNA_F-serratus_M_contig704.18241.1|organism=Fucus serratus male|type=polypeptide|length=166bp
KLADEWVSSGIGSGAIAHNKRLGGGSSDLLTASTTASTLSVSVTGTFTAS
GWDPQSIDGSGHGSAGSGSKGFKPVILNVGPSSRRGSQPYSCKTAGRLQE
EANRFASRLESVSASAWHRHQRECRARAWHHHVGVAERPLGALASVPSPR
FRPVTSAAEHSINAAS
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mRNA from alignment at F-serratus_M_contig704:219641..220538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig704.18241.1 ID=mRNA_F-serratus_M_contig704.18241.1|Name=mRNA_F-serratus_M_contig704.18241.1|organism=Fucus serratus male|type=mRNA|length=898bp|location=Sequence derived from alignment at F-serratus_M_contig704:219641..220538+ (Fucus serratus male)
AAGCTGGCAGACGAGTGGGTCTCTTCTGGCATAGGAAGCGGGGCCATCGC
GCACAACAAGCGACTGGGCGGGGGCAGTTCGGACTTGCTCACCGCAAGCA
CGACGGCTTCGACGTTGTCTGTCTCTGTCACCGGAACCTTTACCGCGTCG
GGCTGGGACCCTCAGAGCATCGATGGGAGCGGGCATGGCTCCGCCGGCAG
CGGCAGCAAGGGGTTCAAGCCGGTGATCTTGAACGTCGGGCCGAGCTCTC
GCCGCGGGAGTCAGGTGAAGTTCGTCGTAGGAATGGCAGACGCAGCGTTA
TACTTATTCTTATACTTACCGTTAGATGTTGCGCTAGGCTTAGCGTTAGC
GGATCACTGATTTACCACCACGAAGGCCTTCGATTCTTTGCGAGTTTCGT
TTTCTTGTGGCGTAGAACCATCCTCTTTGTAAGCATAAACGGTATATAAT
AGTATGTAAAATTCAATAGAGGAGTATTTCATACTATTAATACTATTATA
TTTTAACGCCACTGCCTCTACTCGGGCAGACACCAAAAATACATTTGCAG
TCTATCACCAATGCTACGTCGTAGATGAAATTTGGTACATAGAGTAGGAC
TTTACTACGACCGCAACCAAAGAAATCTAAAAAGCGCGCATCTTTTTATT
CCTTTTTTGTGCAGCCGTATTCTTGCAAGACGGCGGGGCGGCTGCAAGAG
GAGGCAAACCGATTCGCCTCCCGCCTCGAGAGCGTGTCCGCTTCGGCGTG
GCATCGACACCAGCGCGAGTGCAGAGCCCGTGCATGGCATCATCACGTTG
GCGTCGCCGAAAGACCCCTCGGCGCCCTCGCATCCGTCCCAAGCCCTCGC
TTCCGCCCCGTCACGTCTGCGGCAGAGCACTCGATCAACGCAGCGTCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig704:219641..220538+

>mRNA_F-serratus_M_contig704.18241.1 ID=mRNA_F-serratus_M_contig704.18241.1|Name=mRNA_F-serratus_M_contig704.18241.1|organism=Fucus serratus male|type=CDS|length=996bp|location=Sequence derived from alignment at F-serratus_M_contig704:219641..220538+ (Fucus serratus male)
AAGCTGGCAGACGAGTGGGTCTCTTCTGGCATAGGAAGCGGGGCCATCGC
GCACAACAAGCGACTGGGCGGGGGCAGTTCGGACTTGCTCACCGCAAGCA
CGACGGCTTCGACGTTGTCTGTCTCTGTCACCGGAACCTTTACCGCGTCG
GGCTGGGACCCTCAGAGCATCGATGGGAGCGGGCATGGCTCCGCCGGCAG
CGGCAGCAAGGGGTTCAAGCCGGTGATCTTGAACGTCGGGCCGAGCTCTC
GCCGCGGGAGTCAGAAGCTGGCAGACGAGTGGGTCTCTTCTGGCATAGGA
AGCGGGGCCATCGCGCACAACAAGCGACTGGGCGGGGGCAGTTCGGACTT
GCTCACCGCAAGCACGACGGCTTCGACGTTGTCTGTCTCTGTCACCGGAA
CCTTTACCGCGTCGGGCTGGGACCCTCAGAGCATCGATGGGAGCGGGCAT
GGCTCCGCCGGCAGCGGCAGCAAGGGGTTCAAGCCGGTGATCTTGAACGT
CGGGCCGAGCTCTCGCCGCGGGAGTCAGCCGTATTCTTGCAAGACGGCGG
GGCGGCTGCAAGAGGAGGCAAACCGATTCGCCTCCCGCCTCGAGAGCGTG
TCCGCTTCGGCGTGGCATCGACACCAGCGCGAGTGCAGAGCCCGTGCATG
GCATCATCACGTTGGCGTCGCCGAAAGACCCCTCGGCGCCCTCGCATCCG
TCCCAAGCCCTCGCTTCCGCCCCGTCACGTCTGCGGCAGAGCACTCGATC
AACGCAGCGTCTCCGTATTCTTGCAAGACGGCGGGGCGGCTGCAAGAGGA
GGCAAACCGATTCGCCTCCCGCCTCGAGAGCGTGTCCGCTTCGGCGTGGC
ATCGACACCAGCGCGAGTGCAGAGCCCGTGCATGGCATCATCACGTTGGC
GTCGCCGAAAGACCCCTCGGCGCCCTCGCATCCGTCCCAAGCCCTCGCTT
CCGCCCCGTCACGTCTGCGGCAGAGCACTCGATCAACGCAGCGTCT
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