mRNA_F-serratus_M_contig703.18232.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig703.18232.1
Unique NamemRNA_F-serratus_M_contig703.18232.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig703.18232.1 vs. uniprot
Match: A0A2R4QQ66_9PHAE (Ribosomal protein S8 n=3 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ66_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 2.050e-73
Identity = 111/124 (89.52%), Postives = 113/124 (91.13%), Query Frame = 1
Query:    1 MLPGIFNKLHNGFVVNHFSTTFKEIPVCFCKQVLDLLRKENFIRGYMKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISPLDLYRLPKEFGVVVVPTRRGIMTSEEAVRTGEGGEILAYV 372
            MLP IFNKLHNGF+V HFSTTFKEI   FC QVLDLL KENFIRGY+KTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYIS LDLYRLP EFGVVVV TRRGIMTSEEAVR GEGGEILAYV
Sbjct:    1 MLPSIFNKLHNGFMVYHFSTTFKEIS--FCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPNEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYV 122          
BLAST of mRNA_F-serratus_M_contig703.18232.1 vs. uniprot
Match: A0A1L2F1H4_9PHAE (Ribosomal protein S8 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1H4_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 8.710e-52
Identity = 83/123 (67.48%), Postives = 98/123 (79.67%), Query Frame = 1
Query:    1 MLPGIFNKLHNGFVVNHFSTTFKEIPVCFCKQVLDLLRKENFIRGYMKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISPLDLYRLPKEFGVVVVPTRRGIMTSEEAVRTGEGGEILAY 369
            MLP IFNKL N  VV HFST+FKE+   FC ++LDLL +EN IRGY K  DGLI V+LRYYDG P+C  L +VS+PRDRLY+S LDLYRL ++FGV+VV T +GIMTSE A+R GEGGEILAY
Sbjct:    1 MLPKIFNKLRNSVVVYHFSTSFKEVG--FCVRILDLLWRENLIRGYTK-KDGLITVMLRYYDGFPICCCLTIVSKPRDRLYLSSLDLYRLSRDFGVLVVSTPKGIMTSESAIRKGEGGEILAY 120          
BLAST of mRNA_F-serratus_M_contig703.18232.1 vs. uniprot
Match: A0A4D6E512_9PHAE (Ribosomal protein S8 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E512_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 6.040e-50
Identity = 73/124 (58.87%), Postives = 96/124 (77.42%), Query Frame = 1
Query:    1 MLPGIFNKLHNGFVVNHFSTTFKEIPVCFCKQVLDLLRKENFIRGYMKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISPLDLYRLPKEFGVVVVPTRRGIMTSEEAVRTGEGGEILAYV 372
            ML  I NKL NG+ V HF  +FKE+   FC ++LD+L KEN IRGY KTN+G+I V LRY+DG P+C RL+V+SRPRDR+YIS LD+ RL  +FGV+++ T +G++T EE +R GEGGE+LAYV
Sbjct:    1 MLAKIINKLRNGYTVYHFGVSFKEVR--FCTKILDILWKENLIRGYTKTNEGVITVFLRYHDGSPICTRLVVISRPRDRIYISALDITRLSNDFGVLILSTTKGVVTHEECIRKGEGGEVLAYV 122          
BLAST of mRNA_F-serratus_M_contig703.18232.1 vs. uniprot
Match: A0A516ICG1_9PHAE (Ribosomal protein S8 n=3 Tax=Lessonia TaxID=105411 RepID=A0A516ICG1_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.730e-49
Identity = 75/124 (60.48%), Postives = 97/124 (78.23%), Query Frame = 1
Query:    1 MLPGIFNKLHNGFVVNHFSTTFKEIPVCFCKQVLDLLRKENFIRGYMKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISPLDLYRLPKEFGVVVVPTRRGIMTSEEAVRTGEGGEILAYV 372
            ML  I N+L NG++V HF  +FKE+   FC +VLD+L KEN I+GY KT DG+I V LRYY+G P+C RL+V+SRPRDR+YIS LDL RL  EFGV+++ T +GIMT+++ +R GEGGEILAYV
Sbjct:    1 MLSKIINRLRNGYMVYHFGVSFKEVR--FCIKVLDILWKENLIKGYTKTKDGVITVFLRYYNGFPICTRLVVISRPRDRIYISLLDLARLSNEFGVLILSTSQGIMTNKQCIRKGEGGEILAYV 122          
BLAST of mRNA_F-serratus_M_contig703.18232.1 vs. uniprot
Match: S4S3T6_LAMHY (Ribosomal protein S8 n=41 Tax=Laminariales TaxID=2886 RepID=S4S3T6_LAMHY)

HSP 1 Score: 162 bits (409), Expect = 3.490e-49
Identity = 73/123 (59.35%), Postives = 98/123 (79.67%), Query Frame = 1
Query:    1 MLPGIFNKLHNGFVVNHFSTTFKEIPVCFCKQVLDLLRKENFIRGYMKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISPLDLYRLPKEFGVVVVPTRRGIMTSEEAVRTGEGGEILAY 369
            ML  I N+L NG++V HF  +FKE+   FC +VLD+L KEN I+GY KTN+G+I VLLRY+DG P+C RL+V+SRPRDR+Y+S LDL RL  +FGV+++ T +GI+T+E+ VR GEGGE+LAY
Sbjct:    1 MLAKIINRLRNGYMVYHFGVSFKEVR--FCTKVLDILWKENLIKGYTKTNEGVITVLLRYHDGSPICTRLVVISRPRDRIYLSLLDLARLSNDFGVLILSTPKGILTNEDCVRKGEGGEVLAY 121          
BLAST of mRNA_F-serratus_M_contig703.18232.1 vs. uniprot
Match: Q2TUH1_9PHAE (Ribosomal protein S8 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUH1_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 7.030e-49
Identity = 76/123 (61.79%), Postives = 98/123 (79.67%), Query Frame = 1
Query:    1 MLPGIFNKLHNGFVVNHFSTTFKEIPVCFCKQVLDLLRKENFIRGYMKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISPLDLYRLPKEFGVVVVPTRRGIMTSEEAVRTGEGGEILAY 369
            ML  I N+L NG++V H   +F+E+   F  +VLDLL KEN IRGY KT+DG+I VLLRYY+G P+C+RLIV+SRPRDRLY+S LDL R+  +FGV+V+ T +GIMT+E+A+R GEGGEILAY
Sbjct:    1 MLAKIINRLRNGYMVYHLGVSFQEVS--FSTKVLDLLWKENLIRGYTKTDDGIITVLLRYYEGSPICSRLIVISRPRDRLYLSSLDLSRVSNDFGVLVLSTPKGIMTAEDAIRKGEGGEILAY 121          
BLAST of mRNA_F-serratus_M_contig703.18232.1 vs. uniprot
Match: V9PB06_UNDPI (Ribosomal protein S8 n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=V9PB06_UNDPI)

HSP 1 Score: 161 bits (407), Expect = 7.030e-49
Identity = 72/123 (58.54%), Postives = 97/123 (78.86%), Query Frame = 1
Query:    1 MLPGIFNKLHNGFVVNHFSTTFKEIPVCFCKQVLDLLRKENFIRGYMKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISPLDLYRLPKEFGVVVVPTRRGIMTSEEAVRTGEGGEILAY 369
            ML  I N+L NG++V HF  +FKE+   F  +VLD+L KEN I+GY+KTNDG+I V LRY+DG P+C RL+V+SRPRDR+Y+S LDL RL  +FG++++ T +GIMT+E+ VR GEGGE+LAY
Sbjct:    1 MLSKIINRLRNGYMVYHFGVSFKEVR--FSTKVLDILWKENLIKGYVKTNDGIITVFLRYHDGFPICTRLVVISRPRDRIYLSLLDLARLSNDFGILILSTTKGIMTNEQCVRKGEGGEVLAY 121          
BLAST of mRNA_F-serratus_M_contig703.18232.1 vs. uniprot
Match: A0A4D6E4Q2_9PHAE (Ribosomal protein S8 n=1 Tax=Nereocystis luetkeana TaxID=117523 RepID=A0A4D6E4Q2_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 7.030e-49
Identity = 73/123 (59.35%), Postives = 95/123 (77.24%), Query Frame = 1
Query:    1 MLPGIFNKLHNGFVVNHFSTTFKEIPVCFCKQVLDLLRKENFIRGYMKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISPLDLYRLPKEFGVVVVPTRRGIMTSEEAVRTGEGGEILAY 369
            ML  I N+L NG++V H   +FKE+   FC +VLD+L KEN IRGY KTN+G+I V LRY+DG P+C RLIV+SRPRDR+YIS LD+ RL  +FGV+++ T +GIMT E+ +R GEGGE+LAY
Sbjct:    1 MLAKIINRLRNGYMVYHLGVSFKEVR--FCAKVLDILWKENLIRGYKKTNEGIITVFLRYHDGSPICTRLIVISRPRDRIYISALDISRLSNDFGVLILSTTKGIMTHEQCIRKGEGGEVLAY 121          
BLAST of mRNA_F-serratus_M_contig703.18232.1 vs. uniprot
Match: A0A8F0JZR1_9PHAE (Ribosomal protein S8 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZR1_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 2.010e-48
Identity = 75/124 (60.48%), Postives = 98/124 (79.03%), Query Frame = 1
Query:    1 MLPGIFNKLHNGFVVNHFSTTFKEIPVCFCKQVLDLLRKENFIRGYMKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISPLDLYRLPKEFGVVVVPTRRGIMTSEEAVRTGEGGEILAYV 372
            ML  I N+L NG++V H   +FK++   FC +VLD+L KE  I+GY KTN+G+I V LRY +GLP+C RL+V+SRPRDRLY+S LDL R+ K+FGV+++ T +GIMTS+EAVR GEGGEILAYV
Sbjct:    1 MLAKIINRLRNGYLVYHLGVSFKDVR--FCTKVLDILWKERLIKGYTKTNEGVITVFLRYDEGLPICTRLVVLSRPRDRLYLSLLDLSRVSKDFGVLILSTPKGIMTSQEAVRKGEGGEILAYV 122          
BLAST of mRNA_F-serratus_M_contig703.18232.1 vs. uniprot
Match: A0A0U1WNM2_SARFS (Ribosomal protein S8 n=22 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1WNM2_SARFS)

HSP 1 Score: 158 bits (399), Expect = 1.130e-47
Identity = 79/123 (64.23%), Postives = 94/123 (76.42%), Query Frame = 1
Query:    1 MLPGIFNKLHNGFVVNHFSTTFKEIPVCFCKQVLDLLRKENFIRGYMKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISPLDLYRLPKEFGVVVVPTRRGIMTSEEAVRTGEGGEILAY 369
            ML  IFNKL N   V HFST+FKE+   FC ++LDLL KEN IRGY K N GLI VLLRYYDG P+C  L VVS+PRDRLY+S LDL RL ++FGV++V T +GIMT+E A+R G+GGEIL Y
Sbjct:    1 MLSKIFNKLRNSLAVYHFSTSFKEVG--FCVKILDLLWKENLIRGYTKKN-GLITVLLRYYDGSPICCSLTVVSKPRDRLYLSSLDLCRLSQDFGVLIVSTPKGIMTAESAIREGDGGEILGY 120          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig703.18232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QQ66_9PHAE2.050e-7389.52Ribosomal protein S8 n=3 Tax=Fucus TaxID=3011 RepI... [more]
A0A1L2F1H4_9PHAE8.710e-5267.48Ribosomal protein S8 n=1 Tax=Coccophora langsdorfi... [more]
A0A4D6E512_9PHAE6.040e-5058.87Ribosomal protein S8 n=2 Tax=Laminariaceae TaxID=3... [more]
A0A516ICG1_9PHAE1.730e-4960.48Ribosomal protein S8 n=3 Tax=Lessonia TaxID=105411... [more]
S4S3T6_LAMHY3.490e-4959.35Ribosomal protein S8 n=41 Tax=Laminariales TaxID=2... [more]
Q2TUH1_9PHAE7.030e-4961.79Ribosomal protein S8 n=2 Tax=Desmarestia TaxID=313... [more]
V9PB06_UNDPI7.030e-4958.54Ribosomal protein S8 n=1 Tax=Undaria pinnatifida T... [more]
A0A4D6E4Q2_9PHAE7.030e-4959.35Ribosomal protein S8 n=1 Tax=Nereocystis luetkeana... [more]
A0A8F0JZR1_9PHAE2.010e-4860.48Ribosomal protein S8 n=1 Tax=Chorda asiatica TaxID... [more]
A0A0U1WNM2_SARFS1.130e-4764.23Ribosomal protein S8 n=22 Tax=Sargassaceae TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig703contigF-serratus_M_contig703:262892..263269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.0
Seed ortholog evalue1.3e-29
Seed eggNOG ortholog2880.D7FV76
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribosomal protein S8
EggNOG OGs2E4Z8@1,2SBTY@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size378
Cds size378
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932161.627805-CDS-F-serratus_M_contig703:262891..2632691622932161.627805-CDS-F-serratus_M_contig703:262891..263269Fucus serratus maleCDSF-serratus_M_contig703 262892..263269 +
1690964177.2976503-CDS-F-serratus_M_contig703:262891..2632691690964177.2976503-CDS-F-serratus_M_contig703:262891..263269Fucus serratus maleCDSF-serratus_M_contig703 262892..263269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig703.18232.1prot_F-serratus_M_contig703.18232.1Fucus serratus malepolypeptideF-serratus_M_contig703 262892..263269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig703.18232.1

>prot_F-serratus_M_contig703.18232.1 ID=prot_F-serratus_M_contig703.18232.1|Name=mRNA_F-serratus_M_contig703.18232.1|organism=Fucus serratus male|type=polypeptide|length=126bp
MLPGIFNKLHNGFVVNHFSTTFKEIPVCFCKQVLDLLRKENFIRGYMKTN
DGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISPLDLYRLPKEFGVVVVP
TRRGIMTSEEAVRTGEGGEILAYVP*
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mRNA from alignment at F-serratus_M_contig703:262892..263269+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig703.18232.1 ID=mRNA_F-serratus_M_contig703.18232.1|Name=mRNA_F-serratus_M_contig703.18232.1|organism=Fucus serratus male|type=mRNA|length=378bp|location=Sequence derived from alignment at F-serratus_M_contig703:262892..263269+ (Fucus serratus male)
ATGCTTCCCGGCATATTTAATAAATTACATAATGGTTTTGTGGTAAACCA TTTCTCGACTACTTTTAAAGAAATACCAGTATGTTTTTGCAAACAAGTTT TAGATCTTTTGAGGAAGGAGAATTTTATTAGAGGTTACATGAAAACAAAT GATGGTTTAATCAAGGTACTTTTAAGGTATTATGATGGTTTGCCTATGTG TAATCGTTTAATTGTCGTATCTCGGCCACGTGACCGACTTTATATATCTC CTTTAGATCTTTATCGTTTGCCTAAAGAATTCGGAGTAGTAGTGGTGCCT ACACGAAGAGGTATTATGACATCAGAAGAGGCCGTTCGTACGGGGGAAGG TGGCGAGATATTAGCATACGTACCATGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig703:262892..263269+

>mRNA_F-serratus_M_contig703.18232.1 ID=mRNA_F-serratus_M_contig703.18232.1|Name=mRNA_F-serratus_M_contig703.18232.1|organism=Fucus serratus male|type=CDS|length=756bp|location=Sequence derived from alignment at F-serratus_M_contig703:262892..263269+ (Fucus serratus male)
ATGCTTCCCGGCATATTTAATAAATTACATAATGGTTTTGTGGTAAACCA
TTTCTCGACTACTTTTAAAGAAATACCAGTATGTTTTTGCAAACAAGTTT
TAGATCTTTTGAGGAAGGAGAATTTTATTAGAGGTTACATGAAAACAAAT
GATGGTTTAATCAAGGTACTTTTAAGGTATTATGATGGTTTGCCTATGTG
TAATCGTTTAATTGTCGTATCTCGGCCACGTGACCGACTTTATATATCTC
CTTTAGATCTTTATCGTTTGCCTAAAGAATTCGGAGTAGTAGTGGTGCCT
ACACGAAGAGGTATTATGACATCAGAAGAGGCCGTTCGTACGGGGGAAGG
TGGCGAGATATTAGCATACGTACCATGAATGCTTCCCGGCATATTTAATA
AATTACATAATGGTTTTGTGGTAAACCATTTCTCGACTACTTTTAAAGAA
ATACCAGTATGTTTTTGCAAACAAGTTTTAGATCTTTTGAGGAAGGAGAA
TTTTATTAGAGGTTACATGAAAACAAATGATGGTTTAATCAAGGTACTTT
TAAGGTATTATGATGGTTTGCCTATGTGTAATCGTTTAATTGTCGTATCT
CGGCCACGTGACCGACTTTATATATCTCCTTTAGATCTTTATCGTTTGCC
TAAAGAATTCGGAGTAGTAGTGGTGCCTACACGAAGAGGTATTATGACAT
CAGAAGAGGCCGTTCGTACGGGGGAAGGTGGCGAGATATTAGCATACGTA
CCATGA
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